data_6I21 # _model_server_result.job_id '_nXBdEBhy-SE6tIwyh2Z0g' _model_server_result.datetime_utc '2024-11-24 13:52:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":413}' # _entry.id 6I21 # _exptl.entry_id 6I21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I21 _cell.length_a 106.389 _cell.length_b 106.389 _cell.length_c 67.486 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 N N N ? 6 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 46 A SER 223 1_555 I MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A O SER 46 A SER 223 1_555 I MG MG . A MG 408 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A O LEU 49 A LEU 226 1_555 I MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A O LEU 49 A LEU 226 1_555 I MG MG . A MG 408 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 I MG MG . A MG 408 1_555 P O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc6 I MG MG . A MG 408 1_555 P O HOH . A HOH 533 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc7 J MG MG . A MG 409 1_555 P O HOH . A HOH 539 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 92 n n N1 C10 FMN doub 93 n n C2 O2 FMN doub 94 n n C2 N3 FMN sing 95 n n N3 C4 FMN sing 96 n n N3 HN3 FMN sing 97 n n C4 O4 FMN doub 98 n n C4 C4A FMN sing 99 n n C4A N5 FMN doub 100 n n C4A C10 FMN sing 101 n n N5 C5A FMN sing 102 n n C5A C6 FMN doub 103 n y C5A C9A FMN sing 104 n y C6 C7 FMN sing 105 n y C6 H6 FMN sing 106 n n C7 C7M FMN sing 107 n n C7 C8 FMN doub 108 n y C7M HM71 FMN sing 109 n n C7M HM72 FMN sing 110 n n C7M HM73 FMN sing 111 n n C8 C8M FMN sing 112 n n C8 C9 FMN sing 113 n y C8M HM81 FMN sing 114 n n C8M HM82 FMN sing 115 n n C8M HM83 FMN sing 116 n n C9 C9A FMN doub 117 n y C9 H9 FMN sing 118 n n C9A N10 FMN sing 119 n n N10 C10 FMN sing 120 n n N10 C1' FMN sing 121 n n C1' C2' FMN sing 122 n n C1' "H1'1" FMN sing 123 n n C1' "H1'2" FMN sing 124 n n C2' O2' FMN sing 125 n n C2' C3' FMN sing 126 n n C2' H2' FMN sing 127 n n O2' HO2' FMN sing 128 n n C3' O3' FMN sing 129 n n C3' C4' FMN sing 130 n n C3' H3' FMN sing 131 n n O3' HO3' FMN sing 132 n n C4' O4' FMN sing 133 n n C4' C5' FMN sing 134 n n C4' H4' FMN sing 135 n n O4' HO4' FMN sing 136 n n C5' O5' FMN sing 137 n n C5' "H5'1" FMN sing 138 n n C5' "H5'2" FMN sing 139 n n O5' P FMN sing 140 n n P O1P FMN doub 141 n n P O2P FMN sing 142 n n P O3P FMN sing 143 n n O2P HOP2 FMN sing 144 n n O3P HOP3 FMN sing 145 n n # _atom_sites.entry_id 6I21 _atom_sites.fract_transf_matrix[1][1] 0.009399 _atom_sites.fract_transf_matrix[1][2] 0.005427 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 2 EDO A 1 403 3 EDO EDO . E 2 EDO A 1 404 4 EDO EDO . F 2 EDO A 1 405 5 EDO EDO . G 2 EDO A 1 406 6 EDO EDO . H 3 CL A 1 407 11 CL CL . I 4 MG A 1 408 21 MG MG . J 4 MG A 1 409 22 MG MG . K 5 PEG A 1 410 31 PEG PEG . L 5 PEG A 1 411 32 PEG PEG . M 5 PEG A 1 412 33 PEG PEG . N 6 FMN A 1 413 101 FMN FCY . O 6 FMN A 1 414 111 FMN FMN . P 7 HOH A 1 501 476 HOH HOH . P 7 HOH A 2 502 441 HOH HOH . P 7 HOH A 3 503 494 HOH HOH . P 7 HOH A 4 504 496 HOH HOH . P 7 HOH A 5 505 528 HOH HOH . P 7 HOH A 6 506 442 HOH HOH . P 7 HOH A 7 507 409 HOH HOH . P 7 HOH A 8 508 521 HOH HOH . P 7 HOH A 9 509 501 HOH HOH . P 7 HOH A 10 510 506 HOH HOH . P 7 HOH A 11 511 514 HOH HOH . P 7 HOH A 12 512 508 HOH HOH . P 7 HOH A 13 513 478 HOH HOH . P 7 HOH A 14 514 461 HOH HOH . P 7 HOH A 15 515 431 HOH HOH . P 7 HOH A 16 516 434 HOH HOH . P 7 HOH A 17 517 444 HOH HOH . P 7 HOH A 18 518 418 HOH HOH . P 7 HOH A 19 519 475 HOH HOH . P 7 HOH A 20 520 513 HOH HOH . P 7 HOH A 21 521 432 HOH HOH . P 7 HOH A 22 522 408 HOH HOH . P 7 HOH A 23 523 474 HOH HOH . P 7 HOH A 24 524 503 HOH HOH . P 7 HOH A 25 525 488 HOH HOH . P 7 HOH A 26 526 407 HOH HOH . P 7 HOH A 27 527 465 HOH HOH . P 7 HOH A 28 528 413 HOH HOH . P 7 HOH A 29 529 486 HOH HOH . P 7 HOH A 30 530 424 HOH HOH . P 7 HOH A 31 531 419 HOH HOH . P 7 HOH A 32 532 453 HOH HOH . P 7 HOH A 33 533 420 HOH HOH . P 7 HOH A 34 534 447 HOH HOH . P 7 HOH A 35 535 491 HOH HOH . P 7 HOH A 36 536 430 HOH HOH . P 7 HOH A 37 537 469 HOH HOH . P 7 HOH A 38 538 509 HOH HOH . P 7 HOH A 39 539 412 HOH HOH . P 7 HOH A 40 540 458 HOH HOH . P 7 HOH A 41 541 460 HOH HOH . P 7 HOH A 42 542 511 HOH HOH . P 7 HOH A 43 543 480 HOH HOH . P 7 HOH A 44 544 445 HOH HOH . P 7 HOH A 45 545 477 HOH HOH . P 7 HOH A 46 546 504 HOH HOH . P 7 HOH A 47 547 426 HOH HOH . P 7 HOH A 48 548 439 HOH HOH . P 7 HOH A 49 549 406 HOH HOH . P 7 HOH A 50 550 438 HOH HOH . P 7 HOH A 51 551 468 HOH HOH . P 7 HOH A 52 552 497 HOH HOH . P 7 HOH A 53 553 425 HOH HOH . P 7 HOH A 54 554 457 HOH HOH . P 7 HOH A 55 555 505 HOH HOH . P 7 HOH A 56 556 489 HOH HOH . P 7 HOH A 57 557 414 HOH HOH . P 7 HOH A 58 558 427 HOH HOH . P 7 HOH A 59 559 417 HOH HOH . P 7 HOH A 60 560 443 HOH HOH . P 7 HOH A 61 561 451 HOH HOH . P 7 HOH A 62 562 464 HOH HOH . P 7 HOH A 63 563 493 HOH HOH . P 7 HOH A 64 564 401 HOH HOH . P 7 HOH A 65 565 429 HOH HOH . P 7 HOH A 66 566 416 HOH HOH . P 7 HOH A 67 567 459 HOH HOH . P 7 HOH A 68 568 498 HOH HOH . P 7 HOH A 69 569 437 HOH HOH . P 7 HOH A 70 570 452 HOH HOH . P 7 HOH A 71 571 526 HOH HOH . P 7 HOH A 72 572 421 HOH HOH . P 7 HOH A 73 573 500 HOH HOH . P 7 HOH A 74 574 404 HOH HOH . P 7 HOH A 75 575 423 HOH HOH . P 7 HOH A 76 576 507 HOH HOH . P 7 HOH A 77 577 428 HOH HOH . P 7 HOH A 78 578 472 HOH HOH . P 7 HOH A 79 579 482 HOH HOH . P 7 HOH A 80 580 450 HOH HOH . P 7 HOH A 81 581 410 HOH HOH . P 7 HOH A 82 582 522 HOH HOH . P 7 HOH A 83 583 519 HOH HOH . P 7 HOH A 84 584 470 HOH HOH . P 7 HOH A 85 585 403 HOH HOH . P 7 HOH A 86 586 440 HOH HOH . P 7 HOH A 87 587 448 HOH HOH . P 7 HOH A 88 588 433 HOH HOH . P 7 HOH A 89 589 485 HOH HOH . P 7 HOH A 90 590 467 HOH HOH . P 7 HOH A 91 591 415 HOH HOH . P 7 HOH A 92 592 487 HOH HOH . P 7 HOH A 93 593 449 HOH HOH . P 7 HOH A 94 594 499 HOH HOH . P 7 HOH A 95 595 473 HOH HOH . P 7 HOH A 96 596 405 HOH HOH . P 7 HOH A 97 597 446 HOH HOH . P 7 HOH A 98 598 411 HOH HOH . P 7 HOH A 99 599 436 HOH HOH . P 7 HOH A 100 600 495 HOH HOH . P 7 HOH A 101 601 481 HOH HOH . P 7 HOH A 102 602 483 HOH HOH . P 7 HOH A 103 603 502 HOH HOH . P 7 HOH A 104 604 463 HOH HOH . P 7 HOH A 105 605 456 HOH HOH . P 7 HOH A 106 606 520 HOH HOH . P 7 HOH A 107 607 516 HOH HOH . P 7 HOH A 108 608 422 HOH HOH . P 7 HOH A 109 609 525 HOH HOH . P 7 HOH A 110 610 515 HOH HOH . P 7 HOH A 111 611 471 HOH HOH . P 7 HOH A 112 612 435 HOH HOH . P 7 HOH A 113 613 479 HOH HOH . P 7 HOH A 114 614 517 HOH HOH . P 7 HOH A 115 615 529 HOH HOH . P 7 HOH A 116 616 490 HOH HOH . P 7 HOH A 117 617 510 HOH HOH . P 7 HOH A 118 618 492 HOH HOH . P 7 HOH A 119 619 484 HOH HOH . P 7 HOH A 120 620 527 HOH HOH . P 7 HOH A 121 621 512 HOH HOH . P 7 HOH A 122 622 454 HOH HOH . P 7 HOH A 123 623 462 HOH HOH . P 7 HOH A 124 624 523 HOH HOH . P 7 HOH A 125 625 402 HOH HOH . P 7 HOH A 126 626 524 HOH HOH . P 7 HOH A 127 627 518 HOH HOH . P 7 HOH A 128 628 455 HOH HOH . P 7 HOH A 129 629 466 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . A . N 6 33.362 -38.644 6.5 0.3 19 ? N1 FMN 413 A 1 HETATM 2 C C2 FMN . A . N 6 32.067 -38.308 6.315 0.3 19.9 ? C2 FMN 413 A 1 HETATM 3 O O2 FMN . A . N 6 31.372 -38.983 5.518 0.3 19.17 ? O2 FMN 413 A 1 HETATM 4 N N3 FMN . A . N 6 31.51 -37.284 6.976 0.3 19.94 ? N3 FMN 413 A 1 HETATM 5 C C4 FMN . A . N 6 32.211 -36.495 7.809 0.3 19.84 ? C4 FMN 413 A 1 HETATM 6 O O4 FMN . A . N 6 31.629 -35.581 8.424 0.3 20.33 ? O4 FMN 413 A 1 HETATM 7 C C4A FMN . A . N 6 33.575 -36.914 8.238 0.3 19.97 ? C4A FMN 413 A 1 HETATM 8 N N5 FMN . A . N 6 34.519 -36.046 8.944 0.3 22.61 ? N5 FMN 413 A 1 HETATM 9 C C5A FMN . A . N 6 35.781 -36.482 9.102 0.3 20.02 ? C5A FMN 413 A 1 HETATM 10 C C6 FMN . A . N 6 36.65 -35.826 9.952 0.3 19.86 ? C6 FMN 413 A 1 HETATM 11 C C7 FMN . A . N 6 37.972 -36.224 10.087 0.3 19.72 ? C7 FMN 413 A 1 HETATM 12 C C7M FMN . A . N 6 38.889 -35.482 11.026 0.3 20.44 ? C7M FMN 413 A 1 HETATM 13 C C8 FMN . A . N 6 38.479 -37.375 9.32 0.3 19.9 ? C8 FMN 413 A 1 HETATM 14 C C8M FMN . A . N 6 39.908 -37.812 9.444 0.3 21.8 ? C8M FMN 413 A 1 HETATM 15 C C9 FMN . A . N 6 37.617 -38.041 8.459 0.3 19.92 ? C9 FMN 413 A 1 HETATM 16 C C9A FMN . A . N 6 36.299 -37.63 8.337 0.3 19.34 ? C9A FMN 413 A 1 HETATM 17 N N10 FMN . A . N 6 35.448 -38.334 7.473 0.3 19.55 ? N10 FMN 413 A 1 HETATM 18 C C10 FMN . A . N 6 34.139 -37.915 7.323 0.3 19.42 ? C10 FMN 413 A 1 HETATM 19 C C1' FMN . A . N 6 35.961 -39.418 6.646 0.3 21.09 ? C1' FMN 413 A 1 HETATM 20 C C2' FMN . A . N 6 35.879 -40.822 7.144 0.3 20.14 ? C2' FMN 413 A 1 HETATM 21 O O2' FMN . A . N 6 36.197 -40.827 8.529 0.3 20.33 ? O2' FMN 413 A 1 HETATM 22 C C3' FMN . A . N 6 36.914 -41.629 6.371 0.3 21.5 ? C3' FMN 413 A 1 HETATM 23 O O3' FMN . A . N 6 38.181 -40.985 6.457 0.3 18.47 ? O3' FMN 413 A 1 HETATM 24 C C4' FMN . A . N 6 36.572 -41.76 4.894 0.3 22.29 ? C4' FMN 413 A 1 HETATM 25 O O4' FMN . A . N 6 35.366 -42.508 4.777 0.3 21.39 ? O4' FMN 413 A 1 HETATM 26 C C5' FMN . A . N 6 37.705 -42.453 4.136 0.3 22.81 ? C5' FMN 413 A 1 HETATM 27 O O5' FMN . A . N 6 38.131 -43.631 4.814 0.3 21.2 ? O5' FMN 413 A 1 HETATM 28 P P FMN . A . N 6 37.532 -45.083 4.446 0.3 22 ? P FMN 413 A 1 HETATM 29 O O1P FMN . A . N 6 37.693 -45.272 2.936 0.3 24.21 ? O1P FMN 413 A 1 HETATM 30 O O2P FMN . A . N 6 38.277 -46.139 5.213 0.3 24.15 ? O2P FMN 413 A 1 HETATM 31 O O3P FMN . A . N 6 36.045 -45.123 4.762 0.3 22.75 ? O3P FMN 413 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #