data_6I23 # _model_server_result.job_id MN_DqI2jQOq01hW0vZdGhQ _model_server_result.datetime_utc '2024-11-24 14:53:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 6I23 # _exptl.entry_id 6I23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.356 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I23 _cell.length_a 104.563 _cell.length_b 104.563 _cell.length_c 68.01 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 I N N # _chem_comp.formula 'C18 H22 N3 O9 P' _chem_comp.formula_weight 455.356 _chem_comp.id 9O9 _chem_comp.mon_nstd_flag . _chem_comp.name 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 9O9 doub 1 n n OBA CAU 9O9 sing 2 n n C2 N1 9O9 sing 3 n n C2 N3 9O9 sing 4 n n N1 C6 9O9 doub 5 n n N3 C4 9O9 sing 6 n n OAY CAT 9O9 sing 7 n n CAU CAT 9O9 sing 8 n n CAU CAV 9O9 sing 9 n n CAW CAV 9O9 sing 10 n n CAW OAX 9O9 sing 11 n n CAT CAS 9O9 sing 12 n n CAS NAG 9O9 sing 13 n n CAV OAZ 9O9 sing 14 n n OAX PBB 9O9 sing 15 n n C6 NAG 9O9 sing 16 n n C6 C5 9O9 sing 17 n n C4 O4 9O9 doub 18 n n C4 C5 9O9 sing 19 n n NAG CAD 9O9 sing 20 n n C5 CAJ 9O9 doub 21 n n OBE PBB 9O9 doub 22 n n PBB OBD 9O9 sing 23 n n PBB OBC 9O9 sing 24 n n CAD CAC 9O9 doub 25 n y CAD CAE 9O9 sing 26 n y CAJ CAE 9O9 sing 27 n n CAC CAB 9O9 sing 28 n y CAE CAF 9O9 doub 29 n y CAB CAP 9O9 sing 30 n n CAB CAA 9O9 doub 31 n y CAF CAA 9O9 sing 32 n y CAA CAO 9O9 sing 33 n n N3 H2 9O9 sing 34 n n CAC H3 9O9 sing 35 n n CAF H4 9O9 sing 36 n n CAJ H5 9O9 sing 37 n n CAO H6 9O9 sing 38 n n CAO H7 9O9 sing 39 n n CAO H8 9O9 sing 40 n n CAP H9 9O9 sing 41 n n CAP H10 9O9 sing 42 n n CAP H11 9O9 sing 43 n n CAS H12 9O9 sing 44 n n CAS H13 9O9 sing 45 n n CAT H14 9O9 sing 46 n n CAU H15 9O9 sing 47 n n CAV H16 9O9 sing 48 n n CAW H17 9O9 sing 49 n n CAW H18 9O9 sing 50 n n OAY H19 9O9 sing 51 n n OAZ H20 9O9 sing 52 n n OBA H21 9O9 sing 53 n n OBC H22 9O9 sing 54 n n OBD H23 9O9 sing 55 n n # _atom_sites.entry_id 6I23 _atom_sites.fract_transf_matrix[1][1] 0.009564 _atom_sites.fract_transf_matrix[1][2] 0.005522 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 9O9 A 1 401 333 9O9 5DF . D 4 CL A 1 402 337 CL CL . E 5 ACT A 1 403 341 ACT ACT . F 6 EDO A 1 404 347 EDO EDO . G 6 EDO A 1 405 348 EDO EDO . H 6 EDO A 1 406 349 EDO EDO . I 3 9O9 B 1 401 334 9O9 5DF . J 4 CL B 1 402 336 CL CL . K 7 MES B 1 403 339 MES MES . L 5 ACT B 1 404 342 ACT ACT . M 6 EDO B 1 405 344 EDO EDO . N 6 EDO B 1 406 345 EDO EDO . O 6 EDO B 1 407 346 EDO EDO . P 8 HOH A 1 501 500 HOH HOH . P 8 HOH A 2 502 439 HOH HOH . P 8 HOH A 3 503 428 HOH HOH . P 8 HOH A 4 504 465 HOH HOH . P 8 HOH A 5 505 489 HOH HOH . P 8 HOH A 6 506 440 HOH HOH . P 8 HOH A 7 507 464 HOH HOH . P 8 HOH A 8 508 499 HOH HOH . P 8 HOH A 9 509 459 HOH HOH . P 8 HOH A 10 510 519 HOH HOH . P 8 HOH A 11 511 498 HOH HOH . P 8 HOH A 12 512 446 HOH HOH . P 8 HOH A 13 513 437 HOH HOH . P 8 HOH A 14 514 421 HOH HOH . P 8 HOH A 15 515 474 HOH HOH . P 8 HOH A 16 516 423 HOH HOH . P 8 HOH A 17 517 490 HOH HOH . P 8 HOH A 18 518 472 HOH HOH . P 8 HOH A 19 519 420 HOH HOH . P 8 HOH A 20 520 494 HOH HOH . P 8 HOH A 21 521 433 HOH HOH . P 8 HOH A 22 522 509 HOH HOH . P 8 HOH A 23 523 432 HOH HOH . P 8 HOH A 24 524 426 HOH HOH . P 8 HOH A 25 525 430 HOH HOH . P 8 HOH A 26 526 424 HOH HOH . P 8 HOH A 27 527 402 HOH HOH . P 8 HOH A 28 528 493 HOH HOH . P 8 HOH A 29 529 449 HOH HOH . P 8 HOH A 30 530 463 HOH HOH . P 8 HOH A 31 531 518 HOH HOH . P 8 HOH A 32 532 504 HOH HOH . P 8 HOH A 33 533 442 HOH HOH . P 8 HOH A 34 534 453 HOH HOH . P 8 HOH A 35 535 431 HOH HOH . P 8 HOH A 36 536 406 HOH HOH . P 8 HOH A 37 537 405 HOH HOH . P 8 HOH A 38 538 497 HOH HOH . P 8 HOH A 39 539 469 HOH HOH . P 8 HOH A 40 540 416 HOH HOH . P 8 HOH A 41 541 411 HOH HOH . P 8 HOH A 42 542 491 HOH HOH . P 8 HOH A 43 543 444 HOH HOH . P 8 HOH A 44 544 470 HOH HOH . P 8 HOH A 45 545 455 HOH HOH . P 8 HOH A 46 546 415 HOH HOH . P 8 HOH A 47 547 502 HOH HOH . P 8 HOH A 48 548 484 HOH HOH . P 8 HOH A 49 549 508 HOH HOH . P 8 HOH A 50 550 505 HOH HOH . P 8 HOH A 51 551 466 HOH HOH . P 8 HOH A 52 552 462 HOH HOH . P 8 HOH A 53 553 530 HOH HOH . P 8 HOH A 54 554 503 HOH HOH . P 8 HOH A 55 555 413 HOH HOH . P 8 HOH A 56 556 476 HOH HOH . P 8 HOH A 57 557 496 HOH HOH . P 8 HOH A 58 558 422 HOH HOH . P 8 HOH A 59 559 473 HOH HOH . P 8 HOH A 60 560 427 HOH HOH . P 8 HOH A 61 561 526 HOH HOH . P 8 HOH A 62 562 475 HOH HOH . P 8 HOH A 63 563 528 HOH HOH . P 8 HOH A 64 564 529 HOH HOH . P 8 HOH A 65 565 516 HOH HOH . P 8 HOH A 66 566 471 HOH HOH . P 8 HOH A 67 567 436 HOH HOH . P 8 HOH A 68 568 438 HOH HOH . Q 8 HOH B 1 501 467 HOH HOH . Q 8 HOH B 2 502 458 HOH HOH . Q 8 HOH B 3 503 495 HOH HOH . Q 8 HOH B 4 504 514 HOH HOH . Q 8 HOH B 5 505 521 HOH HOH . Q 8 HOH B 6 506 407 HOH HOH . Q 8 HOH B 7 507 452 HOH HOH . Q 8 HOH B 8 508 515 HOH HOH . Q 8 HOH B 9 509 419 HOH HOH . Q 8 HOH B 10 510 450 HOH HOH . Q 8 HOH B 11 511 510 HOH HOH . Q 8 HOH B 12 512 409 HOH HOH . Q 8 HOH B 13 513 404 HOH HOH . Q 8 HOH B 14 514 468 HOH HOH . Q 8 HOH B 15 515 512 HOH HOH . Q 8 HOH B 16 516 460 HOH HOH . Q 8 HOH B 17 517 487 HOH HOH . Q 8 HOH B 18 518 408 HOH HOH . Q 8 HOH B 19 519 429 HOH HOH . Q 8 HOH B 20 520 483 HOH HOH . Q 8 HOH B 21 521 443 HOH HOH . Q 8 HOH B 22 522 447 HOH HOH . Q 8 HOH B 23 523 456 HOH HOH . Q 8 HOH B 24 524 485 HOH HOH . Q 8 HOH B 25 525 478 HOH HOH . Q 8 HOH B 26 526 506 HOH HOH . Q 8 HOH B 27 527 441 HOH HOH . Q 8 HOH B 28 528 482 HOH HOH . Q 8 HOH B 29 529 454 HOH HOH . Q 8 HOH B 30 530 435 HOH HOH . Q 8 HOH B 31 531 417 HOH HOH . Q 8 HOH B 32 532 448 HOH HOH . Q 8 HOH B 33 533 479 HOH HOH . Q 8 HOH B 34 534 434 HOH HOH . Q 8 HOH B 35 535 457 HOH HOH . Q 8 HOH B 36 536 481 HOH HOH . Q 8 HOH B 37 537 403 HOH HOH . Q 8 HOH B 38 538 418 HOH HOH . Q 8 HOH B 39 539 520 HOH HOH . Q 8 HOH B 40 540 523 HOH HOH . Q 8 HOH B 41 541 445 HOH HOH . Q 8 HOH B 42 542 488 HOH HOH . Q 8 HOH B 43 543 401 HOH HOH . Q 8 HOH B 44 544 425 HOH HOH . Q 8 HOH B 45 545 410 HOH HOH . Q 8 HOH B 46 546 511 HOH HOH . Q 8 HOH B 47 547 412 HOH HOH . Q 8 HOH B 48 548 480 HOH HOH . Q 8 HOH B 49 549 513 HOH HOH . Q 8 HOH B 50 550 501 HOH HOH . Q 8 HOH B 51 551 461 HOH HOH . Q 8 HOH B 52 552 451 HOH HOH . Q 8 HOH B 53 553 486 HOH HOH . Q 8 HOH B 54 554 525 HOH HOH . Q 8 HOH B 55 555 414 HOH HOH . Q 8 HOH B 56 556 522 HOH HOH . Q 8 HOH B 57 557 507 HOH HOH . Q 8 HOH B 58 558 477 HOH HOH . Q 8 HOH B 59 559 492 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9O9 . . . I 3 -47.048 9.48 4.423 1 34.57 ? C4 9O9 401 B 1 HETATM 2 C C5 9O9 . . . I 3 -48.2 10.428 4.322 1 36.18 ? C5 9O9 401 B 1 HETATM 3 C C6 9O9 . . . I 3 -49.353 10.157 5.223 1 36.78 ? C6 9O9 401 B 1 HETATM 4 N N1 9O9 . . . I 3 -49.321 9.096 6.074 1 33.74 ? N1 9O9 401 B 1 HETATM 5 N N3 9O9 . . . I 3 -47.147 8.476 5.308 1 35.64 ? N3 9O9 401 B 1 HETATM 6 C C2 9O9 . . . I 3 -48.241 8.295 6.111 1 36.16 ? C2 9O9 401 B 1 HETATM 7 C CAA 9O9 . . . I 3 -50.497 14.3 2.48 1 35.22 ? CAA 9O9 401 B 1 HETATM 8 C CAB 9O9 . . . I 3 -51.658 14.076 3.38 1 37.77 ? CAB 9O9 401 B 1 HETATM 9 C CAC 9O9 . . . I 3 -51.614 12.996 4.257 1 37.7 ? CAC 9O9 401 B 1 HETATM 10 C CAD 9O9 . . . I 3 -50.518 12.115 4.316 1 36.24 ? CAD 9O9 401 B 1 HETATM 11 C CAE 9O9 . . . I 3 -49.366 12.347 3.409 1 37.29 ? CAE 9O9 401 B 1 HETATM 12 C CAF 9O9 . . . I 3 -49.403 13.427 2.533 1 36.57 ? CAF 9O9 401 B 1 HETATM 13 C CAJ 9O9 . . . I 3 -48.246 11.51 3.445 1 36.81 ? CAJ 9O9 401 B 1 HETATM 14 C CAO 9O9 . . . I 3 -50.499 15.453 1.517 1 33.17 ? CAO 9O9 401 B 1 HETATM 15 C CAP 9O9 . . . I 3 -52.875 14.981 3.362 1 37 ? CAP 9O9 401 B 1 HETATM 16 C CAS 9O9 . . . I 3 -51.542 10.707 6.141 1 39.16 ? CAS 9O9 401 B 1 HETATM 17 C CAT 9O9 . . . I 3 -52.774 10.053 5.554 1 40.03 ? CAT 9O9 401 B 1 HETATM 18 C CAU 9O9 . . . I 3 -53.963 10.475 6.397 1 45.6 ? CAU 9O9 401 B 1 HETATM 19 C CAV 9O9 . . . I 3 -53.844 10.118 7.877 1 50.78 ? CAV 9O9 401 B 1 HETATM 20 C CAW 9O9 . . . I 3 -55.105 10.761 8.473 1 52.28 ? CAW 9O9 401 B 1 HETATM 21 N NAG 9O9 . . . I 3 -50.473 11.001 5.188 1 37.72 ? NAG 9O9 401 B 1 HETATM 22 O O2 9O9 . . . I 3 -48.281 7.358 6.933 1 39.11 ? O2 9O9 401 B 1 HETATM 23 O O4 9O9 . . . I 3 -46.021 9.601 3.719 1 32.01 ? O4 9O9 401 B 1 HETATM 24 O OAX 9O9 . . . I 3 -55.735 9.994 9.446 1 56.02 ? OAX 9O9 401 B 1 HETATM 25 O OAY 9O9 . . . I 3 -53.026 10.41 4.186 1 39.52 ? OAY 9O9 401 B 1 HETATM 26 O OAZ 9O9 . . . I 3 -53.689 8.691 8.062 1 50.17 ? OAZ 9O9 401 B 1 HETATM 27 O OBA 9O9 . . . I 3 -54.172 11.914 6.349 1 43.35 ? OBA 9O9 401 B 1 HETATM 28 O OBC 9O9 . . . I 3 -57.935 9.355 8.125 1 42.38 ? OBC 9O9 401 B 1 HETATM 29 O OBD 9O9 . . . I 3 -57.361 8.646 10.472 1 52.86 ? OBD 9O9 401 B 1 HETATM 30 O OBE 9O9 . . . I 3 -56.102 7.719 8.49 1 58.21 ? OBE 9O9 401 B 1 HETATM 31 P PBB 9O9 . . . I 3 -56.851 8.911 9.074 1 56.72 ? PBB 9O9 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #