data_6I23
#
_model_server_result.job_id            pPEgCPYGmNFi1NqQ8W4PEQ 
_model_server_result.datetime_utc      '2024-11-24 14:36:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6i23 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    6I23 
#
_exptl.entry_id    6I23 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6I23 
_cell.length_a            104.563 
_cell.length_b            104.563 
_cell.length_c            68.01 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6I23 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,P 1 1 
B,I,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 144 n n 
C1 C2 EDO sing 145 n n 
C1 H11 EDO sing 146 n n 
C1 H12 EDO sing 147 n n 
O1 HO1 EDO sing 148 n n 
C2 O2 EDO sing 149 n n 
C2 H21 EDO sing 150 n n 
C2 H22 EDO sing 151 n n 
O2 HO2 EDO sing 152 n n 
#
_atom_sites.entry_id                     6I23 
_atom_sites.fract_transf_matrix[1][1]    0.009564 
_atom_sites.fract_transf_matrix[1][2]    0.005522 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011043 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014704 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 9O9 A 1 401 333 9O9 5DF . 
D 4 CL A 1 402 337 CL CL . 
E 5 ACT A 1 403 341 ACT ACT . 
F 6 EDO A 1 404 347 EDO EDO . 
G 6 EDO A 1 405 348 EDO EDO . 
H 6 EDO A 1 406 349 EDO EDO . 
I 3 9O9 B 1 401 334 9O9 5DF . 
J 4 CL B 1 402 336 CL CL . 
K 7 MES B 1 403 339 MES MES . 
L 5 ACT B 1 404 342 ACT ACT . 
M 6 EDO B 1 405 344 EDO EDO . 
N 6 EDO B 1 406 345 EDO EDO . 
O 6 EDO B 1 407 346 EDO EDO . 
P 8 HOH A 1 501 500 HOH HOH . 
P 8 HOH A 2 502 439 HOH HOH . 
P 8 HOH A 3 503 428 HOH HOH . 
P 8 HOH A 4 504 465 HOH HOH . 
P 8 HOH A 5 505 489 HOH HOH . 
P 8 HOH A 6 506 440 HOH HOH . 
P 8 HOH A 7 507 464 HOH HOH . 
P 8 HOH A 8 508 499 HOH HOH . 
P 8 HOH A 9 509 459 HOH HOH . 
P 8 HOH A 10 510 519 HOH HOH . 
P 8 HOH A 11 511 498 HOH HOH . 
P 8 HOH A 12 512 446 HOH HOH . 
P 8 HOH A 13 513 437 HOH HOH . 
P 8 HOH A 14 514 421 HOH HOH . 
P 8 HOH A 15 515 474 HOH HOH . 
P 8 HOH A 16 516 423 HOH HOH . 
P 8 HOH A 17 517 490 HOH HOH . 
P 8 HOH A 18 518 472 HOH HOH . 
P 8 HOH A 19 519 420 HOH HOH . 
P 8 HOH A 20 520 494 HOH HOH . 
P 8 HOH A 21 521 433 HOH HOH . 
P 8 HOH A 22 522 509 HOH HOH . 
P 8 HOH A 23 523 432 HOH HOH . 
P 8 HOH A 24 524 426 HOH HOH . 
P 8 HOH A 25 525 430 HOH HOH . 
P 8 HOH A 26 526 424 HOH HOH . 
P 8 HOH A 27 527 402 HOH HOH . 
P 8 HOH A 28 528 493 HOH HOH . 
P 8 HOH A 29 529 449 HOH HOH . 
P 8 HOH A 30 530 463 HOH HOH . 
P 8 HOH A 31 531 518 HOH HOH . 
P 8 HOH A 32 532 504 HOH HOH . 
P 8 HOH A 33 533 442 HOH HOH . 
P 8 HOH A 34 534 453 HOH HOH . 
P 8 HOH A 35 535 431 HOH HOH . 
P 8 HOH A 36 536 406 HOH HOH . 
P 8 HOH A 37 537 405 HOH HOH . 
P 8 HOH A 38 538 497 HOH HOH . 
P 8 HOH A 39 539 469 HOH HOH . 
P 8 HOH A 40 540 416 HOH HOH . 
P 8 HOH A 41 541 411 HOH HOH . 
P 8 HOH A 42 542 491 HOH HOH . 
P 8 HOH A 43 543 444 HOH HOH . 
P 8 HOH A 44 544 470 HOH HOH . 
P 8 HOH A 45 545 455 HOH HOH . 
P 8 HOH A 46 546 415 HOH HOH . 
P 8 HOH A 47 547 502 HOH HOH . 
P 8 HOH A 48 548 484 HOH HOH . 
P 8 HOH A 49 549 508 HOH HOH . 
P 8 HOH A 50 550 505 HOH HOH . 
P 8 HOH A 51 551 466 HOH HOH . 
P 8 HOH A 52 552 462 HOH HOH . 
P 8 HOH A 53 553 530 HOH HOH . 
P 8 HOH A 54 554 503 HOH HOH . 
P 8 HOH A 55 555 413 HOH HOH . 
P 8 HOH A 56 556 476 HOH HOH . 
P 8 HOH A 57 557 496 HOH HOH . 
P 8 HOH A 58 558 422 HOH HOH . 
P 8 HOH A 59 559 473 HOH HOH . 
P 8 HOH A 60 560 427 HOH HOH . 
P 8 HOH A 61 561 526 HOH HOH . 
P 8 HOH A 62 562 475 HOH HOH . 
P 8 HOH A 63 563 528 HOH HOH . 
P 8 HOH A 64 564 529 HOH HOH . 
P 8 HOH A 65 565 516 HOH HOH . 
P 8 HOH A 66 566 471 HOH HOH . 
P 8 HOH A 67 567 436 HOH HOH . 
P 8 HOH A 68 568 438 HOH HOH . 
Q 8 HOH B 1 501 467 HOH HOH . 
Q 8 HOH B 2 502 458 HOH HOH . 
Q 8 HOH B 3 503 495 HOH HOH . 
Q 8 HOH B 4 504 514 HOH HOH . 
Q 8 HOH B 5 505 521 HOH HOH . 
Q 8 HOH B 6 506 407 HOH HOH . 
Q 8 HOH B 7 507 452 HOH HOH . 
Q 8 HOH B 8 508 515 HOH HOH . 
Q 8 HOH B 9 509 419 HOH HOH . 
Q 8 HOH B 10 510 450 HOH HOH . 
Q 8 HOH B 11 511 510 HOH HOH . 
Q 8 HOH B 12 512 409 HOH HOH . 
Q 8 HOH B 13 513 404 HOH HOH . 
Q 8 HOH B 14 514 468 HOH HOH . 
Q 8 HOH B 15 515 512 HOH HOH . 
Q 8 HOH B 16 516 460 HOH HOH . 
Q 8 HOH B 17 517 487 HOH HOH . 
Q 8 HOH B 18 518 408 HOH HOH . 
Q 8 HOH B 19 519 429 HOH HOH . 
Q 8 HOH B 20 520 483 HOH HOH . 
Q 8 HOH B 21 521 443 HOH HOH . 
Q 8 HOH B 22 522 447 HOH HOH . 
Q 8 HOH B 23 523 456 HOH HOH . 
Q 8 HOH B 24 524 485 HOH HOH . 
Q 8 HOH B 25 525 478 HOH HOH . 
Q 8 HOH B 26 526 506 HOH HOH . 
Q 8 HOH B 27 527 441 HOH HOH . 
Q 8 HOH B 28 528 482 HOH HOH . 
Q 8 HOH B 29 529 454 HOH HOH . 
Q 8 HOH B 30 530 435 HOH HOH . 
Q 8 HOH B 31 531 417 HOH HOH . 
Q 8 HOH B 32 532 448 HOH HOH . 
Q 8 HOH B 33 533 479 HOH HOH . 
Q 8 HOH B 34 534 434 HOH HOH . 
Q 8 HOH B 35 535 457 HOH HOH . 
Q 8 HOH B 36 536 481 HOH HOH . 
Q 8 HOH B 37 537 403 HOH HOH . 
Q 8 HOH B 38 538 418 HOH HOH . 
Q 8 HOH B 39 539 520 HOH HOH . 
Q 8 HOH B 40 540 523 HOH HOH . 
Q 8 HOH B 41 541 445 HOH HOH . 
Q 8 HOH B 42 542 488 HOH HOH . 
Q 8 HOH B 43 543 401 HOH HOH . 
Q 8 HOH B 44 544 425 HOH HOH . 
Q 8 HOH B 45 545 410 HOH HOH . 
Q 8 HOH B 46 546 511 HOH HOH . 
Q 8 HOH B 47 547 412 HOH HOH . 
Q 8 HOH B 48 548 480 HOH HOH . 
Q 8 HOH B 49 549 513 HOH HOH . 
Q 8 HOH B 50 550 501 HOH HOH . 
Q 8 HOH B 51 551 461 HOH HOH . 
Q 8 HOH B 52 552 451 HOH HOH . 
Q 8 HOH B 53 553 486 HOH HOH . 
Q 8 HOH B 54 554 525 HOH HOH . 
Q 8 HOH B 55 555 414 HOH HOH . 
Q 8 HOH B 56 556 522 HOH HOH . 
Q 8 HOH B 57 557 507 HOH HOH . 
Q 8 HOH B 58 558 477 HOH HOH . 
Q 8 HOH B 59 559 492 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 6 -32.144 32.93 11.664 1 56.99 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . F 6 -31.748 32.576 13 1 65.08 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . F 6 -31.532 32.01 10.628 1 54.27 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . F 6 -30.743 30.942 11.162 1 54.81 ? O2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#