data_6I23 # _model_server_result.job_id ndkuqqSGrVI6nO7iO2yoBA _model_server_result.datetime_utc '2024-11-08 01:11:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 6I23 # _exptl.entry_id 6I23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I23 _cell.length_a 104.563 _cell.length_b 104.563 _cell.length_c 68.01 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 M N N ? 6 N N N ? 6 O N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 144 n n C1 C2 EDO sing 145 n n C1 H11 EDO sing 146 n n C1 H12 EDO sing 147 n n O1 HO1 EDO sing 148 n n C2 O2 EDO sing 149 n n C2 H21 EDO sing 150 n n C2 H22 EDO sing 151 n n O2 HO2 EDO sing 152 n n # _atom_sites.entry_id 6I23 _atom_sites.fract_transf_matrix[1][1] 0.009564 _atom_sites.fract_transf_matrix[1][2] 0.005522 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 9O9 A 1 401 333 9O9 5DF . D 4 CL A 1 402 337 CL CL . E 5 ACT A 1 403 341 ACT ACT . F 6 EDO A 1 404 347 EDO EDO . G 6 EDO A 1 405 348 EDO EDO . H 6 EDO A 1 406 349 EDO EDO . I 3 9O9 B 1 401 334 9O9 5DF . J 4 CL B 1 402 336 CL CL . K 7 MES B 1 403 339 MES MES . L 5 ACT B 1 404 342 ACT ACT . M 6 EDO B 1 405 344 EDO EDO . N 6 EDO B 1 406 345 EDO EDO . O 6 EDO B 1 407 346 EDO EDO . P 8 HOH A 1 501 500 HOH HOH . P 8 HOH A 2 502 439 HOH HOH . P 8 HOH A 3 503 428 HOH HOH . P 8 HOH A 4 504 465 HOH HOH . P 8 HOH A 5 505 489 HOH HOH . P 8 HOH A 6 506 440 HOH HOH . P 8 HOH A 7 507 464 HOH HOH . P 8 HOH A 8 508 499 HOH HOH . P 8 HOH A 9 509 459 HOH HOH . P 8 HOH A 10 510 519 HOH HOH . P 8 HOH A 11 511 498 HOH HOH . P 8 HOH A 12 512 446 HOH HOH . P 8 HOH A 13 513 437 HOH HOH . P 8 HOH A 14 514 421 HOH HOH . P 8 HOH A 15 515 474 HOH HOH . P 8 HOH A 16 516 423 HOH HOH . P 8 HOH A 17 517 490 HOH HOH . P 8 HOH A 18 518 472 HOH HOH . P 8 HOH A 19 519 420 HOH HOH . P 8 HOH A 20 520 494 HOH HOH . P 8 HOH A 21 521 433 HOH HOH . P 8 HOH A 22 522 509 HOH HOH . P 8 HOH A 23 523 432 HOH HOH . P 8 HOH A 24 524 426 HOH HOH . P 8 HOH A 25 525 430 HOH HOH . P 8 HOH A 26 526 424 HOH HOH . P 8 HOH A 27 527 402 HOH HOH . P 8 HOH A 28 528 493 HOH HOH . P 8 HOH A 29 529 449 HOH HOH . P 8 HOH A 30 530 463 HOH HOH . P 8 HOH A 31 531 518 HOH HOH . P 8 HOH A 32 532 504 HOH HOH . P 8 HOH A 33 533 442 HOH HOH . P 8 HOH A 34 534 453 HOH HOH . P 8 HOH A 35 535 431 HOH HOH . P 8 HOH A 36 536 406 HOH HOH . P 8 HOH A 37 537 405 HOH HOH . P 8 HOH A 38 538 497 HOH HOH . P 8 HOH A 39 539 469 HOH HOH . P 8 HOH A 40 540 416 HOH HOH . P 8 HOH A 41 541 411 HOH HOH . P 8 HOH A 42 542 491 HOH HOH . P 8 HOH A 43 543 444 HOH HOH . P 8 HOH A 44 544 470 HOH HOH . P 8 HOH A 45 545 455 HOH HOH . P 8 HOH A 46 546 415 HOH HOH . P 8 HOH A 47 547 502 HOH HOH . P 8 HOH A 48 548 484 HOH HOH . P 8 HOH A 49 549 508 HOH HOH . P 8 HOH A 50 550 505 HOH HOH . P 8 HOH A 51 551 466 HOH HOH . P 8 HOH A 52 552 462 HOH HOH . P 8 HOH A 53 553 530 HOH HOH . P 8 HOH A 54 554 503 HOH HOH . P 8 HOH A 55 555 413 HOH HOH . P 8 HOH A 56 556 476 HOH HOH . P 8 HOH A 57 557 496 HOH HOH . P 8 HOH A 58 558 422 HOH HOH . P 8 HOH A 59 559 473 HOH HOH . P 8 HOH A 60 560 427 HOH HOH . P 8 HOH A 61 561 526 HOH HOH . P 8 HOH A 62 562 475 HOH HOH . P 8 HOH A 63 563 528 HOH HOH . P 8 HOH A 64 564 529 HOH HOH . P 8 HOH A 65 565 516 HOH HOH . P 8 HOH A 66 566 471 HOH HOH . P 8 HOH A 67 567 436 HOH HOH . P 8 HOH A 68 568 438 HOH HOH . Q 8 HOH B 1 501 467 HOH HOH . Q 8 HOH B 2 502 458 HOH HOH . Q 8 HOH B 3 503 495 HOH HOH . Q 8 HOH B 4 504 514 HOH HOH . Q 8 HOH B 5 505 521 HOH HOH . Q 8 HOH B 6 506 407 HOH HOH . Q 8 HOH B 7 507 452 HOH HOH . Q 8 HOH B 8 508 515 HOH HOH . Q 8 HOH B 9 509 419 HOH HOH . Q 8 HOH B 10 510 450 HOH HOH . Q 8 HOH B 11 511 510 HOH HOH . Q 8 HOH B 12 512 409 HOH HOH . Q 8 HOH B 13 513 404 HOH HOH . Q 8 HOH B 14 514 468 HOH HOH . Q 8 HOH B 15 515 512 HOH HOH . Q 8 HOH B 16 516 460 HOH HOH . Q 8 HOH B 17 517 487 HOH HOH . Q 8 HOH B 18 518 408 HOH HOH . Q 8 HOH B 19 519 429 HOH HOH . Q 8 HOH B 20 520 483 HOH HOH . Q 8 HOH B 21 521 443 HOH HOH . Q 8 HOH B 22 522 447 HOH HOH . Q 8 HOH B 23 523 456 HOH HOH . Q 8 HOH B 24 524 485 HOH HOH . Q 8 HOH B 25 525 478 HOH HOH . Q 8 HOH B 26 526 506 HOH HOH . Q 8 HOH B 27 527 441 HOH HOH . Q 8 HOH B 28 528 482 HOH HOH . Q 8 HOH B 29 529 454 HOH HOH . Q 8 HOH B 30 530 435 HOH HOH . Q 8 HOH B 31 531 417 HOH HOH . Q 8 HOH B 32 532 448 HOH HOH . Q 8 HOH B 33 533 479 HOH HOH . Q 8 HOH B 34 534 434 HOH HOH . Q 8 HOH B 35 535 457 HOH HOH . Q 8 HOH B 36 536 481 HOH HOH . Q 8 HOH B 37 537 403 HOH HOH . Q 8 HOH B 38 538 418 HOH HOH . Q 8 HOH B 39 539 520 HOH HOH . Q 8 HOH B 40 540 523 HOH HOH . Q 8 HOH B 41 541 445 HOH HOH . Q 8 HOH B 42 542 488 HOH HOH . Q 8 HOH B 43 543 401 HOH HOH . Q 8 HOH B 44 544 425 HOH HOH . Q 8 HOH B 45 545 410 HOH HOH . Q 8 HOH B 46 546 511 HOH HOH . Q 8 HOH B 47 547 412 HOH HOH . Q 8 HOH B 48 548 480 HOH HOH . Q 8 HOH B 49 549 513 HOH HOH . Q 8 HOH B 50 550 501 HOH HOH . Q 8 HOH B 51 551 461 HOH HOH . Q 8 HOH B 52 552 451 HOH HOH . Q 8 HOH B 53 553 486 HOH HOH . Q 8 HOH B 54 554 525 HOH HOH . Q 8 HOH B 55 555 414 HOH HOH . Q 8 HOH B 56 556 522 HOH HOH . Q 8 HOH B 57 557 507 HOH HOH . Q 8 HOH B 58 558 477 HOH HOH . Q 8 HOH B 59 559 492 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 6 -50.541 28.601 2.41 1 57.79 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . G 6 -49.514 28.853 3.369 1 59.19 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . G 6 -50.177 29.217 1.066 1 58.83 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . G 6 -50.07 28.191 0.066 1 59.03 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #