data_6I24 # _model_server_result.job_id pc7DRDvdjSnzAHQXP9LbyQ _model_server_result.datetime_utc '2024-11-13 11:01:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 6I24 # _exptl.entry_id 6I24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I24 _cell.length_a 106.314 _cell.length_b 106.314 _cell.length_c 67.541 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 53 A CYS 230 1_555 S C4A 5DD . A 5DD 418 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.804 ? covale ? covale2 E C2 EDO . A EDO 404 1_555 F C2 EDO . A EDO 405 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.189 ? covale ? covale3 E O2 EDO . A EDO 404 1_555 F C1 EDO . A EDO 405 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? metalc ? metalc1 A O SER 46 A SER 223 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A O SER 46 A SER 223 1_555 D MG MG . A MG 403 11_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A O LEU 49 A LEU 226 1_555 D MG MG . A MG 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 A O LEU 49 A LEU 226 1_555 D MG MG . A MG 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 A O LEU 49 A LEU 226 1_555 D MG MG . A MG 403 11_656 ? A ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 A O LEU 49 A LEU 226 1_555 D MG MG . A MG 403 11_656 ? B ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc7 D MG MG . A MG 403 1_555 U O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc8 D MG MG . A MG 403 1_555 U O HOH . A HOH 546 11_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 201 n n C1 C2 EDO sing 202 n n C1 H11 EDO sing 203 n n C1 H12 EDO sing 204 n n O1 HO1 EDO sing 205 n n C2 O2 EDO sing 206 n n C2 H21 EDO sing 207 n n C2 H22 EDO sing 208 n n O2 HO2 EDO sing 209 n n # _atom_sites.entry_id 6I24 _atom_sites.fract_transf_matrix[1][1] 0.009406 _atom_sites.fract_transf_matrix[1][2] 0.005431 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 315 ACT ACT . C 3 CL A 1 402 317 CL CL . D 4 MG A 1 403 319 MG MG . E 5 EDO A 1 404 321 EDO EDO . F 5 EDO A 1 405 322 EDO EDO . G 5 EDO A 1 406 323 EDO EDO . H 5 EDO A 1 407 324 EDO EDO . I 5 EDO A 1 408 325 EDO EDO . J 5 EDO A 1 409 326 EDO EDO . K 5 EDO A 1 410 327 EDO EDO . L 5 EDO A 1 411 328 EDO EDO . M 5 EDO A 1 412 329 EDO EDO . N 5 EDO A 1 413 330 EDO EDO . O 5 EDO A 1 414 331 EDO EDO . P 5 EDO A 1 415 332 EDO EDO . Q 5 EDO A 1 416 333 EDO EDO . R 6 PEG A 1 417 341 PEG PEG . S 7 5DD A 1 418 351 5DD 5DD . T 8 9O9 A 1 419 353 9O9 5DF . U 9 HOH A 1 501 525 HOH HOH . U 9 HOH A 2 502 425 HOH HOH . U 9 HOH A 3 503 453 HOH HOH . U 9 HOH A 4 504 452 HOH HOH . U 9 HOH A 5 505 430 HOH HOH . U 9 HOH A 6 506 461 HOH HOH . U 9 HOH A 7 507 483 HOH HOH . U 9 HOH A 8 508 531 HOH HOH . U 9 HOH A 9 509 517 HOH HOH . U 9 HOH A 10 510 422 HOH HOH . U 9 HOH A 11 511 515 HOH HOH . U 9 HOH A 12 512 433 HOH HOH . U 9 HOH A 13 513 507 HOH HOH . U 9 HOH A 14 514 486 HOH HOH . U 9 HOH A 15 515 449 HOH HOH . U 9 HOH A 16 516 487 HOH HOH . U 9 HOH A 17 517 479 HOH HOH . U 9 HOH A 18 518 489 HOH HOH . U 9 HOH A 19 519 518 HOH HOH . U 9 HOH A 20 520 491 HOH HOH . U 9 HOH A 21 521 466 HOH HOH . U 9 HOH A 22 522 472 HOH HOH . U 9 HOH A 23 523 436 HOH HOH . U 9 HOH A 24 524 500 HOH HOH . U 9 HOH A 25 525 508 HOH HOH . U 9 HOH A 26 526 497 HOH HOH . U 9 HOH A 27 527 413 HOH HOH . U 9 HOH A 28 528 460 HOH HOH . U 9 HOH A 29 529 424 HOH HOH . U 9 HOH A 30 530 434 HOH HOH . U 9 HOH A 31 531 458 HOH HOH . U 9 HOH A 32 532 509 HOH HOH . U 9 HOH A 33 533 527 HOH HOH . U 9 HOH A 34 534 406 HOH HOH . U 9 HOH A 35 535 417 HOH HOH . U 9 HOH A 36 536 403 HOH HOH . U 9 HOH A 37 537 488 HOH HOH . U 9 HOH A 38 538 427 HOH HOH . U 9 HOH A 39 539 519 HOH HOH . U 9 HOH A 40 540 426 HOH HOH . U 9 HOH A 41 541 468 HOH HOH . U 9 HOH A 42 542 504 HOH HOH . U 9 HOH A 43 543 505 HOH HOH . U 9 HOH A 44 544 514 HOH HOH . U 9 HOH A 45 545 494 HOH HOH . U 9 HOH A 46 546 404 HOH HOH . U 9 HOH A 47 547 533 HOH HOH . U 9 HOH A 48 548 502 HOH HOH . U 9 HOH A 49 549 465 HOH HOH . U 9 HOH A 50 550 411 HOH HOH . U 9 HOH A 51 551 415 HOH HOH . U 9 HOH A 52 552 478 HOH HOH . U 9 HOH A 53 553 405 HOH HOH . U 9 HOH A 54 554 490 HOH HOH . U 9 HOH A 55 555 469 HOH HOH . U 9 HOH A 56 556 485 HOH HOH . U 9 HOH A 57 557 441 HOH HOH . U 9 HOH A 58 558 414 HOH HOH . U 9 HOH A 59 559 522 HOH HOH . U 9 HOH A 60 560 475 HOH HOH . U 9 HOH A 61 561 496 HOH HOH . U 9 HOH A 62 562 409 HOH HOH . U 9 HOH A 63 563 446 HOH HOH . U 9 HOH A 64 564 416 HOH HOH . U 9 HOH A 65 565 438 HOH HOH . U 9 HOH A 66 566 477 HOH HOH . U 9 HOH A 67 567 410 HOH HOH . U 9 HOH A 68 568 442 HOH HOH . U 9 HOH A 69 569 445 HOH HOH . U 9 HOH A 70 570 463 HOH HOH . U 9 HOH A 71 571 435 HOH HOH . U 9 HOH A 72 572 462 HOH HOH . U 9 HOH A 73 573 412 HOH HOH . U 9 HOH A 74 574 464 HOH HOH . U 9 HOH A 75 575 484 HOH HOH . U 9 HOH A 76 576 428 HOH HOH . U 9 HOH A 77 577 451 HOH HOH . U 9 HOH A 78 578 473 HOH HOH . U 9 HOH A 79 579 439 HOH HOH . U 9 HOH A 80 580 418 HOH HOH . U 9 HOH A 81 581 429 HOH HOH . U 9 HOH A 82 582 437 HOH HOH . U 9 HOH A 83 583 506 HOH HOH . U 9 HOH A 84 584 493 HOH HOH . U 9 HOH A 85 585 419 HOH HOH . U 9 HOH A 86 586 402 HOH HOH . U 9 HOH A 87 587 467 HOH HOH . U 9 HOH A 88 588 407 HOH HOH . U 9 HOH A 89 589 480 HOH HOH . U 9 HOH A 90 590 498 HOH HOH . U 9 HOH A 91 591 482 HOH HOH . U 9 HOH A 92 592 444 HOH HOH . U 9 HOH A 93 593 423 HOH HOH . U 9 HOH A 94 594 476 HOH HOH . U 9 HOH A 95 595 456 HOH HOH . U 9 HOH A 96 596 523 HOH HOH . U 9 HOH A 97 597 408 HOH HOH . U 9 HOH A 98 598 499 HOH HOH . U 9 HOH A 99 599 447 HOH HOH . U 9 HOH A 100 600 448 HOH HOH . U 9 HOH A 101 601 516 HOH HOH . U 9 HOH A 102 602 420 HOH HOH . U 9 HOH A 103 603 450 HOH HOH . U 9 HOH A 104 604 455 HOH HOH . U 9 HOH A 105 605 492 HOH HOH . U 9 HOH A 106 606 443 HOH HOH . U 9 HOH A 107 607 431 HOH HOH . U 9 HOH A 108 608 501 HOH HOH . U 9 HOH A 109 609 526 HOH HOH . U 9 HOH A 110 610 512 HOH HOH . U 9 HOH A 111 611 521 HOH HOH . U 9 HOH A 112 612 532 HOH HOH . U 9 HOH A 113 613 471 HOH HOH . U 9 HOH A 114 614 459 HOH HOH . U 9 HOH A 115 615 530 HOH HOH . U 9 HOH A 116 616 503 HOH HOH . U 9 HOH A 117 617 481 HOH HOH . U 9 HOH A 118 618 495 HOH HOH . U 9 HOH A 119 619 474 HOH HOH . U 9 HOH A 120 620 528 HOH HOH . U 9 HOH A 121 621 520 HOH HOH . U 9 HOH A 122 622 457 HOH HOH . U 9 HOH A 123 623 440 HOH HOH . U 9 HOH A 124 624 510 HOH HOH . U 9 HOH A 125 625 470 HOH HOH . U 9 HOH A 126 626 513 HOH HOH . U 9 HOH A 127 627 529 HOH HOH . U 9 HOH A 128 628 401 HOH HOH . U 9 HOH A 129 629 454 HOH HOH . U 9 HOH A 130 630 534 HOH HOH . U 9 HOH A 131 631 421 HOH HOH . U 9 HOH A 132 632 511 HOH HOH . U 9 HOH A 133 633 432 HOH HOH . U 9 HOH A 134 634 524 HOH HOH . U 9 HOH A 135 635 535 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 49.239 28.247 23.143 0.5 19.07 ? C1 EDO 406 A 1 HETATM 2 O O1 EDO . . . G 5 49.579 28.172 24.516 0.5 19.08 ? O1 EDO 406 A 1 HETATM 3 C C2 EDO . . . G 5 50.351 29.009 22.42 0.5 18.29 ? C2 EDO 406 A 1 HETATM 4 O O2 EDO . . . G 5 49.913 29.313 21.097 0.5 17 ? O2 EDO 406 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #