data_6I29 # _model_server_result.job_id joIJMEIPgZfKfBv1BNd2kA _model_server_result.datetime_utc '2025-07-31 05:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6I29 # _exptl.entry_id 6I29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.673 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-chloranyl-3-[3-[(1~{S})-1-(4-chlorophenyl)ethyl]-5-phenyl-imidazol-4-yl]-~{N}-[2-[4-(2-oxidanylidene-1,3-oxazinan-3-yl)piperidin-1-yl]pyridin-3-yl]-1~{H}-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I29 _cell.length_a 121.883 _cell.length_b 121.883 _cell.length_c 121.883 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 26_555 -x,-y+1/2,z -1 0 0 0 -1 0 0 0 1 0 60.9415 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H37 Cl2 N7 O3' _chem_comp.formula_weight 734.673 _chem_comp.id H0W _chem_comp.mon_nstd_flag . _chem_comp.name 6-chloranyl-3-[3-[(1~{S})-1-(4-chlorophenyl)ethyl]-5-phenyl-imidazol-4-yl]-~{N}-[2-[4-(2-oxidanylidene-1,3-oxazinan-3-yl)piperidin-1-yl]pyridin-3-yl]-1~{H}-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C51 H0W sing 129 n n C48 N47 H0W sing 130 n n O74 C73 H0W doub 131 n n C51 C54 H0W sing 132 n n O35 C34 H0W doub 133 n n C73 O72 H0W sing 134 n n C73 N62 H0W sing 135 n n O72 C69 H0W sing 136 n n C34 N36 H0W sing 137 n n C34 C21 H0W sing 138 n n C82 C84 H0W doub 139 n y C82 C80 H0W sing 140 n y C41 C43 H0W doub 141 n y C41 N40 H0W sing 142 n y C43 C45 H0W sing 143 n y C54 N62 H0W sing 144 n n C54 C56 H0W sing 145 n n N40 C39 H0W doub 146 n y C45 C38 H0W doub 147 n y N22 C21 H0W sing 148 n y N22 C24 H0W sing 149 n y N62 C63 H0W sing 150 n n C38 C39 H0W sing 151 n y C38 N36 H0W sing 152 n n C39 N47 H0W sing 153 n n N47 C59 H0W sing 154 n n C84 C75 H0W sing 155 n y C21 C20 H0W doub 156 n y C31 C24 H0W doub 157 n y C31 C30 H0W sing 158 n y C80 C78 H0W doub 159 n y C66 C69 H0W sing 160 n n C66 C63 H0W sing 161 n n C24 C25 H0W sing 162 n y C59 C56 H0W sing 163 n n C20 C25 H0W sing 164 n y C20 C19 H0W sing 165 n n CL3 C30 H0W sing 166 n n C30 C28 H0W doub 167 n y C25 C26 H0W doub 168 n y C75 C18 H0W sing 169 n n C75 C76 H0W doub 170 n y C78 C76 H0W sing 171 n y C19 C18 H0W doub 172 n y C19 N14 H0W sing 173 n y C18 N17 H0W sing 174 n y C28 C26 H0W sing 175 n y N14 C12 H0W sing 176 n n N14 C15 H0W sing 177 n y N17 C15 H0W doub 178 n y C12 C3 H0W sing 179 n n C12 C86 H0W sing 180 n n C2 C3 H0W doub 181 n y C2 C9 H0W sing 182 n y C3 C4 H0W sing 183 n y C9 C8 H0W doub 184 n y C4 C6 H0W doub 185 n y C8 C6 H0W sing 186 n y C8 CL1 H0W sing 187 n n C2 H1 H0W sing 188 n n C41 H2 H0W sing 189 n n C43 H3 H0W sing 190 n n C45 H4 H0W sing 191 n n C48 H5 H0W sing 192 n n C48 H6 H0W sing 193 n n C51 H7 H0W sing 194 n n C51 H8 H0W sing 195 n n C56 H9 H0W sing 196 n n C56 H10 H0W sing 197 n n C59 H11 H0W sing 198 n n C59 H12 H0W sing 199 n n C12 H13 H0W sing 200 n n C15 H14 H0W sing 201 n n C26 H15 H0W sing 202 n n C28 H16 H0W sing 203 n n C4 H17 H0W sing 204 n n C6 H18 H0W sing 205 n n C9 H19 H0W sing 206 n n N22 H20 H0W sing 207 n n C31 H21 H0W sing 208 n n N36 H22 H0W sing 209 n n C54 H23 H0W sing 210 n n C63 H24 H0W sing 211 n n C63 H25 H0W sing 212 n n C66 H26 H0W sing 213 n n C66 H27 H0W sing 214 n n C69 H28 H0W sing 215 n n C69 H29 H0W sing 216 n n C76 H30 H0W sing 217 n n C78 H31 H0W sing 218 n n C80 H32 H0W sing 219 n n C82 H33 H0W sing 220 n n C84 H34 H0W sing 221 n n C86 H35 H0W sing 222 n n C86 H36 H0W sing 223 n n C86 H37 H0W sing 224 n n # _atom_sites.entry_id 6I29 _atom_sites.fract_transf_matrix[1][1] 0.008205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H0W A 1 201 1 H0W LI1 . C 3 HOH A 1 301 30 HOH HOH . C 3 HOH A 2 302 38 HOH HOH . C 3 HOH A 3 303 26 HOH HOH . C 3 HOH A 4 304 2 HOH HOH . C 3 HOH A 5 305 3 HOH HOH . C 3 HOH A 6 306 37 HOH HOH . C 3 HOH A 7 307 29 HOH HOH . C 3 HOH A 8 308 35 HOH HOH . C 3 HOH A 9 309 21 HOH HOH . C 3 HOH A 10 310 20 HOH HOH . C 3 HOH A 11 311 15 HOH HOH . C 3 HOH A 12 312 25 HOH HOH . C 3 HOH A 13 313 1 HOH HOH . C 3 HOH A 14 314 6 HOH HOH . C 3 HOH A 15 315 23 HOH HOH . C 3 HOH A 16 316 14 HOH HOH . C 3 HOH A 17 317 4 HOH HOH . C 3 HOH A 18 318 19 HOH HOH . C 3 HOH A 19 319 8 HOH HOH . C 3 HOH A 20 320 9 HOH HOH . C 3 HOH A 21 321 5 HOH HOH . C 3 HOH A 22 322 17 HOH HOH . C 3 HOH A 23 323 22 HOH HOH . C 3 HOH A 24 324 27 HOH HOH . C 3 HOH A 25 325 36 HOH HOH . C 3 HOH A 26 326 10 HOH HOH . C 3 HOH A 27 327 7 HOH HOH . C 3 HOH A 28 328 44 HOH HOH . C 3 HOH A 29 329 43 HOH HOH . C 3 HOH A 30 330 28 HOH HOH . C 3 HOH A 31 331 45 HOH HOH . C 3 HOH A 32 332 16 HOH HOH . C 3 HOH A 33 333 13 HOH HOH . C 3 HOH A 34 334 24 HOH HOH . C 3 HOH A 35 335 40 HOH HOH . C 3 HOH A 36 336 32 HOH HOH . C 3 HOH A 37 337 39 HOH HOH . C 3 HOH A 38 338 31 HOH HOH . C 3 HOH A 39 339 33 HOH HOH . C 3 HOH A 40 340 12 HOH HOH . C 3 HOH A 41 341 34 HOH HOH . C 3 HOH A 42 342 11 HOH HOH . C 3 HOH A 43 343 42 HOH HOH . C 3 HOH A 44 344 18 HOH HOH . C 3 HOH A 45 345 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 H0W . . . B 2 -12.602 17.322 -3.438 1 36.64 ? C2 H0W 201 A 1 HETATM 2 C C3 H0W . . . B 2 -13.5 16.249 -3.246 1 36.46 ? C3 H0W 201 A 1 HETATM 3 C C41 H0W . . . B 2 -18.829 18.828 -7.436 1 37.61 ? C41 H0W 201 A 1 HETATM 4 C C43 H0W . . . B 2 -17.53 19.332 -7.426 1 37.55 ? C43 H0W 201 A 1 HETATM 5 C C45 H0W . . . B 2 -16.473 18.425 -7.295 1 37.09 ? C45 H0W 201 A 1 HETATM 6 C C48 H0W . . . B 2 -18.574 14.562 -8.43 1 37.49 ? C48 H0W 201 A 1 HETATM 7 C C51 H0W . . . B 2 -18.702 13.012 -8.373 1 38.93 ? C51 H0W 201 A 1 HETATM 8 C C56 H0W . . . B 2 -19.533 13.3 -5.949 1 40.28 ? C56 H0W 201 A 1 HETATM 9 C C59 H0W . . . B 2 -19.42 14.837 -6.075 1 39.37 ? C59 H0W 201 A 1 HETATM 10 C C12 H0W . . . B 2 -14.921 16.253 -3.826 1 35.11 ? C12 H0W 201 A 1 HETATM 11 C C15 H0W . . . B 2 -16.485 14.381 -3.509 1 33.35 ? C15 H0W 201 A 1 HETATM 12 C C18 H0W . . . B 2 -15.745 12.895 -4.948 1 33.36 ? C18 H0W 201 A 1 HETATM 13 C C19 H0W . . . B 2 -14.959 13.995 -5.016 1 32.55 ? C19 H0W 201 A 1 HETATM 14 C C20 H0W . . . B 2 -13.762 14.255 -5.877 1 33.54 ? C20 H0W 201 A 1 HETATM 15 C C21 H0W . . . B 2 -13.475 15.12 -6.903 1 33.62 ? C21 H0W 201 A 1 HETATM 16 C C24 H0W . . . B 2 -11.612 13.983 -6.593 1 32.96 ? C24 H0W 201 A 1 HETATM 17 C C25 H0W . . . B 2 -12.505 13.466 -5.653 1 32.47 ? C25 H0W 201 A 1 HETATM 18 C C26 H0W . . . B 2 -12.187 12.436 -4.765 1 33.07 ? C26 H0W 201 A 1 HETATM 19 C C28 H0W . . . B 2 -10.876 11.937 -4.863 1 32.24 ? C28 H0W 201 A 1 HETATM 20 C C30 H0W . . . B 2 -9.983 12.451 -5.819 1 31.59 ? C30 H0W 201 A 1 HETATM 21 C C4 H0W . . . B 2 -13.087 15.128 -2.491 1 36.53 ? C4 H0W 201 A 1 HETATM 22 C C6 H0W . . . B 2 -11.801 15.088 -1.955 1 37.04 ? C6 H0W 201 A 1 HETATM 23 C C8 H0W . . . B 2 -10.92 16.152 -2.156 1 37.17 ? C8 H0W 201 A 1 HETATM 24 C C9 H0W . . . B 2 -11.315 17.277 -2.895 1 37.1 ? C9 H0W 201 A 1 HETATM 25 CL CL1 H0W . . . B 2 -9.319 16.089 -1.468 1 40.9 ? CL1 H0W 201 A 1 HETATM 26 N N14 H0W . . . B 2 -15.435 14.883 -4.121 1 34.12 ? N14 H0W 201 A 1 HETATM 27 N N17 H0W . . . B 2 -16.713 13.233 -3.94 1 32.91 ? N17 H0W 201 A 1 HETATM 28 N N22 H0W . . . B 2 -12.227 14.957 -7.294 1 32.85 ? N22 H0W 201 A 1 HETATM 29 C C31 H0W . . . B 2 -10.309 13.486 -6.716 1 31.18 ? C31 H0W 201 A 1 HETATM 30 CL CL3 H0W . . . B 2 -8.382 11.794 -5.869 1 32.51 ? CL3 H0W 201 A 1 HETATM 31 C C34 H0W . . . B 2 -14.35 16.151 -7.496 1 35.76 ? C34 H0W 201 A 1 HETATM 32 O O35 H0W . . . B 2 -13.883 16.897 -8.358 1 35.3 ? O35 H0W 201 A 1 HETATM 33 N N36 H0W . . . B 2 -15.613 16.2 -7.023 1 37.17 ? N36 H0W 201 A 1 HETATM 34 C C38 H0W . . . B 2 -16.728 17.04 -7.205 1 37.75 ? C38 H0W 201 A 1 HETATM 35 C C39 H0W . . . B 2 -18.058 16.587 -7.198 1 38.11 ? C39 H0W 201 A 1 HETATM 36 N N40 H0W . . . B 2 -19.056 17.498 -7.327 1 38.33 ? N40 H0W 201 A 1 HETATM 37 N N47 H0W . . . B 2 -18.389 15.211 -7.097 1 38.1 ? N47 H0W 201 A 1 HETATM 38 C C54 H0W . . . B 2 -19.829 12.68 -7.343 1 40.67 ? C54 H0W 201 A 1 HETATM 39 N N62 H0W . . . B 2 -20.136 11.245 -7.21 1 42.43 ? N62 H0W 201 A 1 HETATM 40 C C63 H0W . . . B 2 -19.258 10.324 -6.468 1 42.9 ? C63 H0W 201 A 1 HETATM 41 C C66 H0W . . . B 2 -19.546 8.815 -6.67 1 42.15 ? C66 H0W 201 A 1 HETATM 42 C C69 H0W . . . B 2 -21.08 8.662 -6.656 1 43.55 ? C69 H0W 201 A 1 HETATM 43 O O72 H0W . . . B 2 -21.686 9.484 -7.67 1 43.86 ? O72 H0W 201 A 1 HETATM 44 C C73 H0W . . . B 2 -21.307 10.774 -7.752 1 42.93 ? C73 H0W 201 A 1 HETATM 45 O O74 H0W . . . B 2 -22.092 11.482 -8.379 1 44.87 ? O74 H0W 201 A 1 HETATM 46 C C75 H0W . . . B 2 -15.761 11.558 -5.63 1 33.4 ? C75 H0W 201 A 1 HETATM 47 C C76 H0W . . . B 2 -16.234 10.48 -4.845 1 33.76 ? C76 H0W 201 A 1 HETATM 48 C C78 H0W . . . B 2 -16.285 9.188 -5.378 1 32.93 ? C78 H0W 201 A 1 HETATM 49 C C80 H0W . . . B 2 -15.87 8.984 -6.699 1 33.99 ? C80 H0W 201 A 1 HETATM 50 C C82 H0W . . . B 2 -15.386 10.052 -7.495 1 33.31 ? C82 H0W 201 A 1 HETATM 51 C C84 H0W . . . B 2 -15.339 11.342 -6.952 1 33.41 ? C84 H0W 201 A 1 HETATM 52 C C86 H0W . . . B 2 -15.823 17.132 -2.887 1 36.41 ? C86 H0W 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #