data_6I2B
#
_model_server_result.job_id            h6IUHyWBhujP4--hpJq8uQ 
_model_server_result.datetime_utc      '2024-10-13 08:22:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6i2b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":101}' 
#
_entry.id    6I2B 
#
_exptl.entry_id    6I2B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-ribopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6I2B 
_cell.length_a            83.726 
_cell.length_b            83.726 
_cell.length_c            60.267 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6I2B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 B OG1 THR 12 D THR 19 1_555 E C1 RIP . D RIP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                RIP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-ribopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     'beta-D-ribose;D-ribose;ribose;RIBOSE(PYRANOSE FORM)' 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
RIP b-D-ribopyranose 'COMMON NAME' GMML 1 
RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6I2B 
_atom_sites.fract_transf_matrix[1][1]    0.011944 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011944 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 9LQ A 1 401 1 9LQ BFS . 
D 3 9LQ A 1 402 2 9LQ BFS . 
E 4 RIP D 1 101 1 RIP RIB . 
F 5 HOH A 1 501 85 HOH HOH . 
F 5 HOH A 2 502 15 HOH HOH . 
F 5 HOH A 3 503 48 HOH HOH . 
F 5 HOH A 4 504 39 HOH HOH . 
F 5 HOH A 5 505 40 HOH HOH . 
F 5 HOH A 6 506 111 HOH HOH . 
F 5 HOH A 7 507 63 HOH HOH . 
F 5 HOH A 8 508 43 HOH HOH . 
F 5 HOH A 9 509 77 HOH HOH . 
F 5 HOH A 10 510 24 HOH HOH . 
F 5 HOH A 11 511 107 HOH HOH . 
F 5 HOH A 12 512 82 HOH HOH . 
F 5 HOH A 13 513 101 HOH HOH . 
F 5 HOH A 14 514 78 HOH HOH . 
F 5 HOH A 15 515 26 HOH HOH . 
F 5 HOH A 16 516 105 HOH HOH . 
F 5 HOH A 17 517 3 HOH HOH . 
F 5 HOH A 18 518 20 HOH HOH . 
F 5 HOH A 19 519 61 HOH HOH . 
F 5 HOH A 20 520 103 HOH HOH . 
F 5 HOH A 21 521 14 HOH HOH . 
F 5 HOH A 22 522 11 HOH HOH . 
F 5 HOH A 23 523 60 HOH HOH . 
F 5 HOH A 24 524 112 HOH HOH . 
F 5 HOH A 25 525 81 HOH HOH . 
F 5 HOH A 26 526 92 HOH HOH . 
F 5 HOH A 27 527 93 HOH HOH . 
F 5 HOH A 28 528 95 HOH HOH . 
F 5 HOH A 29 529 13 HOH HOH . 
F 5 HOH A 30 530 36 HOH HOH . 
F 5 HOH A 31 531 21 HOH HOH . 
F 5 HOH A 32 532 96 HOH HOH . 
F 5 HOH A 33 533 1 HOH HOH . 
F 5 HOH A 34 534 27 HOH HOH . 
F 5 HOH A 35 535 115 HOH HOH . 
F 5 HOH A 36 536 116 HOH HOH . 
F 5 HOH A 37 537 23 HOH HOH . 
F 5 HOH A 38 538 4 HOH HOH . 
F 5 HOH A 39 539 68 HOH HOH . 
F 5 HOH A 40 540 117 HOH HOH . 
F 5 HOH A 41 541 79 HOH HOH . 
F 5 HOH A 42 542 2 HOH HOH . 
F 5 HOH A 43 543 44 HOH HOH . 
F 5 HOH A 44 544 86 HOH HOH . 
F 5 HOH A 45 545 42 HOH HOH . 
F 5 HOH A 46 546 7 HOH HOH . 
F 5 HOH A 47 547 99 HOH HOH . 
F 5 HOH A 48 548 25 HOH HOH . 
F 5 HOH A 49 549 41 HOH HOH . 
F 5 HOH A 50 550 19 HOH HOH . 
F 5 HOH A 51 551 62 HOH HOH . 
F 5 HOH A 52 552 46 HOH HOH . 
F 5 HOH A 53 553 12 HOH HOH . 
F 5 HOH A 54 554 38 HOH HOH . 
F 5 HOH A 55 555 34 HOH HOH . 
F 5 HOH A 56 556 53 HOH HOH . 
F 5 HOH A 57 557 18 HOH HOH . 
F 5 HOH A 58 558 58 HOH HOH . 
F 5 HOH A 59 559 104 HOH HOH . 
F 5 HOH A 60 560 51 HOH HOH . 
F 5 HOH A 61 561 16 HOH HOH . 
F 5 HOH A 62 562 87 HOH HOH . 
F 5 HOH A 63 563 110 HOH HOH . 
F 5 HOH A 64 564 35 HOH HOH . 
F 5 HOH A 65 565 89 HOH HOH . 
F 5 HOH A 66 566 109 HOH HOH . 
F 5 HOH A 67 567 5 HOH HOH . 
F 5 HOH A 68 568 80 HOH HOH . 
F 5 HOH A 69 569 55 HOH HOH . 
F 5 HOH A 70 570 113 HOH HOH . 
F 5 HOH A 71 571 49 HOH HOH . 
F 5 HOH A 72 572 88 HOH HOH . 
F 5 HOH A 73 573 100 HOH HOH . 
F 5 HOH A 74 574 106 HOH HOH . 
F 5 HOH A 75 575 50 HOH HOH . 
F 5 HOH A 76 576 32 HOH HOH . 
F 5 HOH A 77 577 97 HOH HOH . 
F 5 HOH A 78 578 90 HOH HOH . 
F 5 HOH A 79 579 102 HOH HOH . 
F 5 HOH A 80 580 91 HOH HOH . 
F 5 HOH A 81 581 70 HOH HOH . 
F 5 HOH A 82 582 84 HOH HOH . 
F 5 HOH A 83 583 33 HOH HOH . 
F 5 HOH A 84 584 98 HOH HOH . 
F 5 HOH A 85 585 67 HOH HOH . 
F 5 HOH A 86 586 73 HOH HOH . 
F 5 HOH A 87 587 72 HOH HOH . 
G 5 HOH D 1 201 8 HOH HOH . 
G 5 HOH D 2 202 17 HOH HOH . 
G 5 HOH D 3 203 22 HOH HOH . 
G 5 HOH D 4 204 83 HOH HOH . 
G 5 HOH D 5 205 75 HOH HOH . 
G 5 HOH D 6 206 94 HOH HOH . 
G 5 HOH D 7 207 108 HOH HOH . 
G 5 HOH D 8 208 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RIP . . . E 4 28.16 -5.899 -5.308 1 53.61 ? C1 RIP 101 D 1 
HETATM 2 C C2 RIP . . . E 4 27.762 -4.652 -4.526 1 54.4 ? C2 RIP 101 D 1 
HETATM 3 C C3 RIP . . . E 4 28.93 -3.679 -4.475 1 54.57 ? C3 RIP 101 D 1 
HETATM 4 C C4 RIP . . . E 4 30.238 -4.443 -4.348 1 55.06 ? C4 RIP 101 D 1 
HETATM 5 C C5 RIP . . . E 4 29.965 -5.805 -3.738 1 55.31 ? C5 RIP 101 D 1 
HETATM 6 O O5 RIP . . . E 4 29.185 -6.619 -4.623 1 54.36 ? O5 RIP 101 D 1 
HETATM 7 H H2 RIP . . . E 4 27.503 -4.925 -3.504 1 65.28 ? H2 RIP 101 D 1 
HETATM 8 H H3 RIP . . . E 4 28.82 -3.027 -3.61 1 65.48 ? H3 RIP 101 D 1 
HETATM 9 H H4 RIP . . . E 4 30.749 -4.514 -5.307 1 66.08 ? H4 RIP 101 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#