data_6I2H
#
_model_server_result.job_id            mjZsDONOYTIdtnVOzF2R8w 
_model_server_result.datetime_utc      '2024-10-13 06:21:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6i2h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    6I2H 
#
_exptl.entry_id    6I2H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-ribopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6I2H 
_cell.length_a            58.47 
_cell.length_b            71.698 
_cell.length_c            109.612 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6I2H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale7 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 B OG SER 13 D SER 20 1_555 D C1 RIP . D RIP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                RIP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-ribopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
RIP b-D-ribopyranose 'COMMON NAME' GMML 1 
RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6I2H 
_atom_sites.fract_transf_matrix[1][1]    0.017103 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013947 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009123 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 AO8 A 1 401 1 AO8 BFF . 
D 4 RIP D 1 101 1 RIP RIB . 
E 5 CL D 1 102 1 CL CL . 
F 6 HOH A 1 501 208 HOH HOH . 
F 6 HOH A 2 502 231 HOH HOH . 
F 6 HOH A 3 503 87 HOH HOH . 
F 6 HOH A 4 504 224 HOH HOH . 
F 6 HOH A 5 505 134 HOH HOH . 
F 6 HOH A 6 506 132 HOH HOH . 
F 6 HOH A 7 507 137 HOH HOH . 
F 6 HOH A 8 508 223 HOH HOH . 
F 6 HOH A 9 509 169 HOH HOH . 
F 6 HOH A 10 510 197 HOH HOH . 
F 6 HOH A 11 511 59 HOH HOH . 
F 6 HOH A 12 512 145 HOH HOH . 
F 6 HOH A 13 513 97 HOH HOH . 
F 6 HOH A 14 514 227 HOH HOH . 
F 6 HOH A 15 515 157 HOH HOH . 
F 6 HOH A 16 516 27 HOH HOH . 
F 6 HOH A 17 517 17 HOH HOH . 
F 6 HOH A 18 518 63 HOH HOH . 
F 6 HOH A 19 519 8 HOH HOH . 
F 6 HOH A 20 520 117 HOH HOH . 
F 6 HOH A 21 521 37 HOH HOH . 
F 6 HOH A 22 522 88 HOH HOH . 
F 6 HOH A 23 523 57 HOH HOH . 
F 6 HOH A 24 524 133 HOH HOH . 
F 6 HOH A 25 525 204 HOH HOH . 
F 6 HOH A 26 526 154 HOH HOH . 
F 6 HOH A 27 527 82 HOH HOH . 
F 6 HOH A 28 528 52 HOH HOH . 
F 6 HOH A 29 529 179 HOH HOH . 
F 6 HOH A 30 530 119 HOH HOH . 
F 6 HOH A 31 531 121 HOH HOH . 
F 6 HOH A 32 532 12 HOH HOH . 
F 6 HOH A 33 533 95 HOH HOH . 
F 6 HOH A 34 534 49 HOH HOH . 
F 6 HOH A 35 535 34 HOH HOH . 
F 6 HOH A 36 536 40 HOH HOH . 
F 6 HOH A 37 537 70 HOH HOH . 
F 6 HOH A 38 538 81 HOH HOH . 
F 6 HOH A 39 539 214 HOH HOH . 
F 6 HOH A 40 540 30 HOH HOH . 
F 6 HOH A 41 541 32 HOH HOH . 
F 6 HOH A 42 542 153 HOH HOH . 
F 6 HOH A 43 543 25 HOH HOH . 
F 6 HOH A 44 544 11 HOH HOH . 
F 6 HOH A 45 545 22 HOH HOH . 
F 6 HOH A 46 546 219 HOH HOH . 
F 6 HOH A 47 547 120 HOH HOH . 
F 6 HOH A 48 548 111 HOH HOH . 
F 6 HOH A 49 549 147 HOH HOH . 
F 6 HOH A 50 550 75 HOH HOH . 
F 6 HOH A 51 551 53 HOH HOH . 
F 6 HOH A 52 552 47 HOH HOH . 
F 6 HOH A 53 553 116 HOH HOH . 
F 6 HOH A 54 554 20 HOH HOH . 
F 6 HOH A 55 555 138 HOH HOH . 
F 6 HOH A 56 556 60 HOH HOH . 
F 6 HOH A 57 557 7 HOH HOH . 
F 6 HOH A 58 558 125 HOH HOH . 
F 6 HOH A 59 559 24 HOH HOH . 
F 6 HOH A 60 560 93 HOH HOH . 
F 6 HOH A 61 561 21 HOH HOH . 
F 6 HOH A 62 562 198 HOH HOH . 
F 6 HOH A 63 563 90 HOH HOH . 
F 6 HOH A 64 564 19 HOH HOH . 
F 6 HOH A 65 565 4 HOH HOH . 
F 6 HOH A 66 566 15 HOH HOH . 
F 6 HOH A 67 567 45 HOH HOH . 
F 6 HOH A 68 568 135 HOH HOH . 
F 6 HOH A 69 569 225 HOH HOH . 
F 6 HOH A 70 570 140 HOH HOH . 
F 6 HOH A 71 571 77 HOH HOH . 
F 6 HOH A 72 572 152 HOH HOH . 
F 6 HOH A 73 573 68 HOH HOH . 
F 6 HOH A 74 574 211 HOH HOH . 
F 6 HOH A 75 575 126 HOH HOH . 
F 6 HOH A 76 576 149 HOH HOH . 
F 6 HOH A 77 577 28 HOH HOH . 
F 6 HOH A 78 578 216 HOH HOH . 
F 6 HOH A 79 579 175 HOH HOH . 
F 6 HOH A 80 580 221 HOH HOH . 
F 6 HOH A 81 581 31 HOH HOH . 
F 6 HOH A 82 582 170 HOH HOH . 
F 6 HOH A 83 583 3 HOH HOH . 
F 6 HOH A 84 584 115 HOH HOH . 
F 6 HOH A 85 585 13 HOH HOH . 
F 6 HOH A 86 586 102 HOH HOH . 
F 6 HOH A 87 587 39 HOH HOH . 
F 6 HOH A 88 588 14 HOH HOH . 
F 6 HOH A 89 589 105 HOH HOH . 
F 6 HOH A 90 590 161 HOH HOH . 
F 6 HOH A 91 591 99 HOH HOH . 
F 6 HOH A 92 592 55 HOH HOH . 
F 6 HOH A 93 593 89 HOH HOH . 
F 6 HOH A 94 594 94 HOH HOH . 
F 6 HOH A 95 595 41 HOH HOH . 
F 6 HOH A 96 596 83 HOH HOH . 
F 6 HOH A 97 597 10 HOH HOH . 
F 6 HOH A 98 598 44 HOH HOH . 
F 6 HOH A 99 599 62 HOH HOH . 
F 6 HOH A 100 600 73 HOH HOH . 
F 6 HOH A 101 601 46 HOH HOH . 
F 6 HOH A 102 602 127 HOH HOH . 
F 6 HOH A 103 603 6 HOH HOH . 
F 6 HOH A 104 604 98 HOH HOH . 
F 6 HOH A 105 605 26 HOH HOH . 
F 6 HOH A 106 606 110 HOH HOH . 
F 6 HOH A 107 607 80 HOH HOH . 
F 6 HOH A 108 608 174 HOH HOH . 
F 6 HOH A 109 609 43 HOH HOH . 
F 6 HOH A 110 610 50 HOH HOH . 
F 6 HOH A 111 611 101 HOH HOH . 
F 6 HOH A 112 612 159 HOH HOH . 
F 6 HOH A 113 613 201 HOH HOH . 
F 6 HOH A 114 614 85 HOH HOH . 
F 6 HOH A 115 615 79 HOH HOH . 
F 6 HOH A 116 616 5 HOH HOH . 
F 6 HOH A 117 617 207 HOH HOH . 
F 6 HOH A 118 618 48 HOH HOH . 
F 6 HOH A 119 619 112 HOH HOH . 
F 6 HOH A 120 620 84 HOH HOH . 
F 6 HOH A 121 621 186 HOH HOH . 
F 6 HOH A 122 622 143 HOH HOH . 
F 6 HOH A 123 623 205 HOH HOH . 
F 6 HOH A 124 624 65 HOH HOH . 
F 6 HOH A 125 625 213 HOH HOH . 
F 6 HOH A 126 626 51 HOH HOH . 
F 6 HOH A 127 627 29 HOH HOH . 
F 6 HOH A 128 628 103 HOH HOH . 
F 6 HOH A 129 629 16 HOH HOH . 
F 6 HOH A 130 630 71 HOH HOH . 
F 6 HOH A 131 631 173 HOH HOH . 
F 6 HOH A 132 632 104 HOH HOH . 
F 6 HOH A 133 633 36 HOH HOH . 
F 6 HOH A 134 634 96 HOH HOH . 
F 6 HOH A 135 635 76 HOH HOH . 
F 6 HOH A 136 636 139 HOH HOH . 
F 6 HOH A 137 637 222 HOH HOH . 
F 6 HOH A 138 638 167 HOH HOH . 
F 6 HOH A 139 639 35 HOH HOH . 
F 6 HOH A 140 640 131 HOH HOH . 
F 6 HOH A 141 641 38 HOH HOH . 
F 6 HOH A 142 642 203 HOH HOH . 
F 6 HOH A 143 643 100 HOH HOH . 
F 6 HOH A 144 644 106 HOH HOH . 
F 6 HOH A 145 645 64 HOH HOH . 
F 6 HOH A 146 646 9 HOH HOH . 
F 6 HOH A 147 647 172 HOH HOH . 
F 6 HOH A 148 648 33 HOH HOH . 
F 6 HOH A 149 649 136 HOH HOH . 
F 6 HOH A 150 650 108 HOH HOH . 
F 6 HOH A 151 651 58 HOH HOH . 
F 6 HOH A 152 652 156 HOH HOH . 
F 6 HOH A 153 653 165 HOH HOH . 
F 6 HOH A 154 654 181 HOH HOH . 
F 6 HOH A 155 655 107 HOH HOH . 
F 6 HOH A 156 656 86 HOH HOH . 
F 6 HOH A 157 657 141 HOH HOH . 
F 6 HOH A 158 658 72 HOH HOH . 
F 6 HOH A 159 659 185 HOH HOH . 
F 6 HOH A 160 660 195 HOH HOH . 
F 6 HOH A 161 661 192 HOH HOH . 
F 6 HOH A 162 662 189 HOH HOH . 
F 6 HOH A 163 663 193 HOH HOH . 
F 6 HOH A 164 664 229 HOH HOH . 
F 6 HOH A 165 665 209 HOH HOH . 
F 6 HOH A 166 666 78 HOH HOH . 
F 6 HOH A 167 667 150 HOH HOH . 
F 6 HOH A 168 668 61 HOH HOH . 
F 6 HOH A 169 669 23 HOH HOH . 
F 6 HOH A 170 670 118 HOH HOH . 
F 6 HOH A 171 671 144 HOH HOH . 
F 6 HOH A 172 672 160 HOH HOH . 
F 6 HOH A 173 673 215 HOH HOH . 
F 6 HOH A 174 674 158 HOH HOH . 
F 6 HOH A 175 675 228 HOH HOH . 
F 6 HOH A 176 676 230 HOH HOH . 
F 6 HOH A 177 677 226 HOH HOH . 
G 6 HOH D 1 201 217 HOH HOH . 
G 6 HOH D 2 202 171 HOH HOH . 
G 6 HOH D 3 203 146 HOH HOH . 
G 6 HOH D 4 204 206 HOH HOH . 
G 6 HOH D 5 205 56 HOH HOH . 
G 6 HOH D 6 206 114 HOH HOH . 
G 6 HOH D 7 207 42 HOH HOH . 
G 6 HOH D 8 208 191 HOH HOH . 
G 6 HOH D 9 209 220 HOH HOH . 
G 6 HOH D 10 210 91 HOH HOH . 
G 6 HOH D 11 211 74 HOH HOH . 
G 6 HOH D 12 212 202 HOH HOH . 
G 6 HOH D 13 213 200 HOH HOH . 
G 6 HOH D 14 214 199 HOH HOH . 
G 6 HOH D 15 215 130 HOH HOH . 
G 6 HOH D 16 216 210 HOH HOH . 
G 6 HOH D 17 217 212 HOH HOH . 
G 6 HOH D 18 218 67 HOH HOH . 
G 6 HOH D 19 219 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RIP . . . D 4 -0.313 -28.644 -35.413 1 26.64 ? C1 RIP 101 D 1 
HETATM 2 C C2 RIP . . . D 4 -0.818 -30.056 -35.706 1 29.72 ? C2 RIP 101 D 1 
HETATM 3 C C3 RIP . . . D 4 -2.335 -30.126 -35.552 1 32.04 ? C3 RIP 101 D 1 
HETATM 4 C C4 RIP . . . D 4 -3 -29.069 -36.417 1 33.78 ? C4 RIP 101 D 1 
HETATM 5 C C5 RIP . . . D 4 -2.425 -27.712 -36.067 1 33.33 ? C5 RIP 101 D 1 
HETATM 6 O O2 RIP . . . D 4 -0.408 -30.389 -37.023 1 28.54 ? O2 RIP 101 D 1 
HETATM 7 O O3 RIP . . . D 4 -2.859 -31.404 -35.905 1 32.44 ? O3 RIP 101 D 1 
HETATM 8 O O4 RIP . . . D 4 -2.732 -29.351 -37.795 1 35.12 ? O4 RIP 101 D 1 
HETATM 9 O O5 RIP . . . D 4 -1.001 -27.697 -36.237 1 32.64 ? O5 RIP 101 D 1 
HETATM 10 H H1 RIP . . . D 4 0.764 -28.571 -35.556 1 31.97 ? H1 RIP 101 D 1 
HETATM 11 H H2 RIP . . . D 4 -0.375 -30.759 -35.002 1 35.66 ? H2 RIP 101 D 1 
HETATM 12 H H3 RIP . . . D 4 -2.593 -29.929 -34.512 1 38.45 ? H3 RIP 101 D 1 
HETATM 13 H H4 RIP . . . D 4 -4.086 -29.104 -36.34 1 40.53 ? H4 RIP 101 D 1 
HETATM 14 H H51 RIP . . . D 4 -2.759 -26.93 -36.748 1 39.99 ? H51 RIP 101 D 1 
HETATM 15 H H52 RIP . . . D 4 -2.693 -27.397 -35.06 1 39.99 ? H52 RIP 101 D 1 
HETATM 16 H HO2 RIP . . . D 4 0.58 -30.292 -37.049 1 34.25 ? HO2 RIP 101 D 1 
HETATM 17 H HO3 RIP . . . D 4 -3.296 -31.775 -35.094 1 38.93 ? HO3 RIP 101 D 1 
HETATM 18 H HO4 RIP . . . D 4 -3.576 -29.27 -38.312 1 42.14 ? HO4 RIP 101 D 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           18 
#