data_6I2J # _model_server_result.job_id bwK0VobCXodtYplRLFI2zg _model_server_result.datetime_utc '2024-11-24 04:07:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6I2J # _exptl.entry_id 6I2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 669.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I2J _cell.length_a 86.964 _cell.length_b 158.288 _cell.length_c 78.474 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 484 A CYS 484 1_555 A SG CYS 491 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc1 B FE FE . A FE 801 1_555 C O3 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 B FE FE . A FE 801 1_555 C O1 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 B FE FE . A FE 801 1_555 C O2 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 B FE FE . A FE 801 1_555 C O6 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 B FE FE . A FE 801 1_555 C O4 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc6 B FE FE . A FE 801 1_555 C O5 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'C30 H27 N3 O15' _chem_comp.formula_weight 669.546 _chem_comp.id EB4 _chem_comp.mon_nstd_flag . _chem_comp.name "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Enterobactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 EB4 sing 83 n n O6 HO6 EB4 sing 84 n n O4 HO4 EB4 sing 85 n n O5 C5 EB4 sing 86 n n O5 HO5 EB4 sing 87 n n N1 C22 EB4 sing 88 n n N1 HN1 EB4 sing 89 n n C5 C2 EB4 doub 90 n y C5 C8 EB4 sing 91 n y C4 O4 EB4 sing 92 n n C4 C1 EB4 sing 93 n y C1 O1 EB4 sing 94 n n C2 C17 EB4 sing 95 n y C6 C3 EB4 sing 96 n y C8 C11 EB4 doub 97 n y C8 H8 EB4 sing 98 n n N2 C23 EB4 sing 99 n n N2 HN2 EB4 sing 100 n n C9 C6 EB4 doub 101 n y C9 C12 EB4 sing 102 n y C9 H9 EB4 sing 103 n n C10 C7 EB4 sing 104 n y C10 C13 EB4 doub 105 n y C10 H10 EB4 sing 106 n n O3 HO3 EB4 sing 107 n n N3 C21 EB4 sing 108 n n N3 C24 EB4 sing 109 n n N3 HN3 EB4 sing 110 n n C16 C1 EB4 doub 111 n y C16 C19 EB4 sing 112 n n C7 C4 EB4 doub 113 n y C7 H7 EB4 sing 114 n n C3 O3 EB4 sing 115 n n C3 C18 EB4 doub 116 n y C11 C14 EB4 sing 117 n y C11 H11 EB4 sing 118 n n O1 HO1 EB4 sing 119 n n O2 C2 EB4 sing 120 n n O2 HO2 EB4 sing 121 n n C12 C15 EB4 doub 122 n y C12 H12 EB4 sing 123 n n C15 C18 EB4 sing 124 n y C15 H15 EB4 sing 125 n n C14 H14 EB4 sing 126 n n C13 C16 EB4 sing 127 n y C13 H13 EB4 sing 128 n n O7 C19 EB4 doub 129 n n C19 N1 EB4 sing 130 n n C22 C25 EB4 sing 131 n n C22 C28 EB4 sing 132 n n C22 H22 EB4 sing 133 n n C25 O15 EB4 sing 134 n n O10 C25 EB4 doub 135 n n O15 C30 EB4 sing 136 n n C30 C24 EB4 sing 137 n n C30 H30 EB4 sing 138 n n C30 H30A EB4 sing 139 n n C24 H24 EB4 sing 140 n n C21 O9 EB4 doub 141 n n C18 C21 EB4 sing 142 n n C27 C24 EB4 sing 143 n n C27 O14 EB4 sing 144 n n O12 C27 EB4 doub 145 n n C28 H28 EB4 sing 146 n n C28 H28A EB4 sing 147 n n O13 C28 EB4 sing 148 n n O13 C26 EB4 sing 149 n n C26 C23 EB4 sing 150 n n O11 C26 EB4 doub 151 n n C23 C29 EB4 sing 152 n n C23 H23 EB4 sing 153 n n C29 O14 EB4 sing 154 n n C29 H29 EB4 sing 155 n n C29 H29A EB4 sing 156 n n C20 N2 EB4 sing 157 n n O8 C20 EB4 doub 158 n n C17 C14 EB4 doub 159 n y C17 C20 EB4 sing 160 n n # _atom_sites.entry_id 6I2J _atom_sites.fract_transf_matrix[1][1] 0.011499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 801 801 FE FE . C 3 EB4 A 1 802 802 EB4 EB4 . D 4 HOH A 1 901 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 EB4 . . . C 3 -85.336 29.923 124.426 1 92.17 ? O6 EB4 802 A 1 HETATM 2 O O4 EB4 . . . C 3 -85.315 29.864 127.146 1 90.63 ? O4 EB4 802 A 1 HETATM 3 O O5 EB4 . . . C 3 -85.455 32.812 125.942 1 82.06 ? O5 EB4 802 A 1 HETATM 4 N N1 EB4 . . . C 3 -90.368 29.628 128.359 1 111.22 ? N1 EB4 802 A 1 HETATM 5 C C5 EB4 . . . C 3 -86.216 33.929 125.959 1 86.5 ? C5 EB4 802 A 1 HETATM 6 C C4 EB4 . . . C 3 -86.021 29.296 128.167 1 117.83 ? C4 EB4 802 A 1 HETATM 7 C C1 EB4 . . . C 3 -87.472 29.584 128.268 1 121.14 ? C1 EB4 802 A 1 HETATM 8 C C2 EB4 . . . C 3 -87.679 33.797 125.91 1 85.39 ? C2 EB4 802 A 1 HETATM 9 C C6 EB4 . . . C 3 -86.086 29.428 123.407 1 101.14 ? C6 EB4 802 A 1 HETATM 10 C C8 EB4 . . . C 3 -85.64 35.195 126.019 1 98.91 ? C8 EB4 802 A 1 HETATM 11 N N2 EB4 . . . C 3 -90.566 33.855 125.579 1 100.93 ? N2 EB4 802 A 1 HETATM 12 C C9 EB4 . . . C 3 -85.479 29.009 122.23 1 101.86 ? C9 EB4 802 A 1 HETATM 13 C C10 EB4 . . . C 3 -86.201 27.868 130.129 1 112.07 ? C10 EB4 802 A 1 HETATM 14 O O3 EB4 . . . C 3 -88.161 29.742 124.692 1 98.91 ? O3 EB4 802 A 1 HETATM 15 N N3 EB4 . . . C 3 -90.533 29.238 123.464 1 101.26 ? N3 EB4 802 A 1 HETATM 16 C C16 EB4 . . . C 3 -88.244 28.961 129.371 1 120.26 ? C16 EB4 802 A 1 HETATM 17 C C7 EB4 . . . C 3 -85.43 28.446 129.11 1 119.99 ? C7 EB4 802 A 1 HETATM 18 C C3 EB4 . . . C 3 -87.561 29.328 123.547 1 96.46 ? C3 EB4 802 A 1 HETATM 19 C C11 EB4 . . . C 3 -86.424 36.35 126.043 1 98.29 ? C11 EB4 802 A 1 HETATM 20 O O1 EB4 . . . C 3 -88.088 30.406 127.369 1 111.79 ? O1 EB4 802 A 1 HETATM 21 O O2 EB4 . . . C 3 -88.244 32.562 125.852 1 74.79 ? O2 EB4 802 A 1 HETATM 22 C C12 EB4 . . . C 3 -86.252 28.502 121.186 1 114.2 ? C12 EB4 802 A 1 HETATM 23 C C15 EB4 . . . C 3 -87.651 28.403 121.264 1 115.83 ? C15 EB4 802 A 1 HETATM 24 C C14 EB4 . . . C 3 -87.817 36.282 125.993 1 104.4 ? C14 EB4 802 A 1 HETATM 25 C C13 EB4 . . . C 3 -87.573 28.12 130.264 1 111.74 ? C13 EB4 802 A 1 HETATM 26 O O7 EB4 . . . C 3 -90.259 29.107 130.562 1 119.35 ? O7 EB4 802 A 1 HETATM 27 C C19 EB4 . . . C 3 -89.719 29.245 129.475 1 116.83 ? C19 EB4 802 A 1 HETATM 28 C C22 EB4 . . . C 3 -91.796 29.896 128.284 1 98.96 ? C22 EB4 802 A 1 HETATM 29 C C25 EB4 . . . C 3 -92.411 29.551 126.938 1 95.03 ? C25 EB4 802 A 1 HETATM 30 O O10 EB4 . . . C 3 -93.521 29.965 126.622 1 89.6 ? O10 EB4 802 A 1 HETATM 31 O O15 EB4 . . . C 3 -91.701 28.705 125.981 1 104.41 ? O15 EB4 802 A 1 HETATM 32 C C30 EB4 . . . C 3 -92.304 28.242 124.765 1 99.5 ? C30 EB4 802 A 1 HETATM 33 C C24 EB4 . . . C 3 -91.977 29.147 123.582 1 93.19 ? C24 EB4 802 A 1 HETATM 34 C C21 EB4 . . . C 3 -89.857 28.685 122.456 1 104.68 ? C21 EB4 802 A 1 HETATM 35 C C18 EB4 . . . C 3 -88.352 28.792 122.408 1 103.45 ? C18 EB4 802 A 1 HETATM 36 O O9 EB4 . . . C 3 -90.435 28.126 121.536 1 115.07 ? O9 EB4 802 A 1 HETATM 37 C C27 EB4 . . . C 3 -92.627 30.496 123.715 1 88.19 ? C27 EB4 802 A 1 HETATM 38 O O12 EB4 . . . C 3 -93.715 30.734 123.204 1 93.04 ? O12 EB4 802 A 1 HETATM 39 C C28 EB4 . . . C 3 -92.021 31.362 128.654 1 98.82 ? C28 EB4 802 A 1 HETATM 40 O O13 EB4 . . . C 3 -91.529 32.256 127.655 1 95.19 ? O13 EB4 802 A 1 HETATM 41 C C26 EB4 . . . C 3 -92.46 32.998 126.82 1 91.81 ? C26 EB4 802 A 1 HETATM 42 O O11 EB4 . . . C 3 -93.632 33.027 127.136 1 105.5 ? O11 EB4 802 A 1 HETATM 43 C C23 EB4 . . . C 3 -92.003 33.694 125.573 1 97.42 ? C23 EB4 802 A 1 HETATM 44 C C29 EB4 . . . C 3 -92.413 32.91 124.327 1 97.36 ? C29 EB4 802 A 1 HETATM 45 O O14 EB4 . . . C 3 -91.948 31.562 124.424 1 94.73 ? O14 EB4 802 A 1 HETATM 46 C C20 EB4 . . . C 3 -89.975 35.008 125.891 1 106.99 ? C20 EB4 802 A 1 HETATM 47 O O8 EB4 . . . C 3 -90.604 36.024 126.161 1 122.14 ? O8 EB4 802 A 1 HETATM 48 C C17 EB4 . . . C 3 -88.478 35.052 125.928 1 100.87 ? C17 EB4 802 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #