data_6I2U # _model_server_result.job_id PNfnBFjxHNOArpA-44_UJQ _model_server_result.datetime_utc '2024-10-10 07:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6I2U # _exptl.entry_id 6I2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I2U _cell.length_a 80.89 _cell.length_b 80.89 _cell.length_c 173.34 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O ASP 84 A ASP 202 1_555 G C4 PEG . A PEG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale2 A N THR 86 A THR 204 1_555 G O4 PEG . A PEG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale3 A C ARG 168 A ARG 286 1_555 A N TPO 169 A TPO 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C TPO 169 A TPO 287 1_555 A N TPO 170 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C TPO 170 A TPO 288 1_555 A N LEU 171 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 A SG CYS 172 A CYS 290 1_555 B S1P COA . A COA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A OD1 ASN 143 A ASN 261 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A OD1 ASP 156 A ASP 274 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 A OD2 ASP 156 A ASP 274 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 B O5A COA . A COA 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 B O2A COA . A COA 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc6 B O4A COA . A COA 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc7 C MG MG . A MG 502 1_555 J O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? metalc ? metalc8 C MG MG . A MG 502 1_555 J O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc9 C MG MG . A MG 502 1_555 J O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc10 D MG MG . A MG 503 1_555 J O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc11 E MG MG . A MG 504 1_555 J O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6I2U _atom_sites.fract_transf_matrix[1][1] 0.012362 _atom_sites.fract_transf_matrix[1][2] 0.007137 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 1 COA COA . C 3 MG A 1 502 2 MG MG . D 3 MG A 1 503 3 MG MG . E 3 MG A 1 504 4 MG MG . F 3 MG A 1 505 5 MG MG . G 4 PEG A 1 506 6 PEG PEG . H 4 PEG A 1 507 7 PEG PEG . I 4 PEG A 1 508 8 PEG PEG . J 5 HOH A 1 601 5 HOH HOH . J 5 HOH A 2 602 18 HOH HOH . J 5 HOH A 3 603 2 HOH HOH . J 5 HOH A 4 604 3 HOH HOH . J 5 HOH A 5 605 1 HOH HOH . J 5 HOH A 6 606 16 HOH HOH . J 5 HOH A 7 607 4 HOH HOH . J 5 HOH A 8 608 24 HOH HOH . J 5 HOH A 9 609 6 HOH HOH . J 5 HOH A 10 610 7 HOH HOH . J 5 HOH A 11 611 11 HOH HOH . J 5 HOH A 12 612 8 HOH HOH . J 5 HOH A 13 613 9 HOH HOH . J 5 HOH A 14 614 26 HOH HOH . J 5 HOH A 15 615 10 HOH HOH . J 5 HOH A 16 616 21 HOH HOH . J 5 HOH A 17 617 22 HOH HOH . J 5 HOH A 18 618 23 HOH HOH . J 5 HOH A 19 619 20 HOH HOH . J 5 HOH A 20 620 17 HOH HOH . J 5 HOH A 21 621 13 HOH HOH . J 5 HOH A 22 622 14 HOH HOH . J 5 HOH A 23 623 15 HOH HOH . J 5 HOH A 24 624 19 HOH HOH . J 5 HOH A 25 625 25 HOH HOH . J 5 HOH A 26 626 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 -4.017 31.21 -8.942 1 62 ? N1A COA 501 A 1 HETATM 2 C C2A COA . . . B 2 -3.824 31.425 -7.631 1 57.93 ? C2A COA 501 A 1 HETATM 3 N N3A COA . . . B 2 -4.428 30.682 -6.694 1 65 ? N3A COA 501 A 1 HETATM 4 C C4A COA . . . B 2 -5.26 29.679 -7.059 1 59.07 ? C4A COA 501 A 1 HETATM 5 C C5A COA . . . B 2 -5.51 29.394 -8.443 1 56.87 ? C5A COA 501 A 1 HETATM 6 C C6A COA . . . B 2 -4.833 30.228 -9.387 1 56.08 ? C6A COA 501 A 1 HETATM 7 N N6A COA . . . B 2 -5.006 30.035 -10.717 1 53.98 ? N6A COA 501 A 1 HETATM 8 N N7A COA . . . B 2 -6.349 28.383 -8.514 1 64.31 ? N7A COA 501 A 1 HETATM 9 C C8A COA . . . B 2 -6.656 27.992 -7.26 1 60.49 ? C8A COA 501 A 1 HETATM 10 N N9A COA . . . B 2 -5.98 28.786 -6.428 1 63.34 ? N9A COA 501 A 1 HETATM 11 C C1B COA . . . B 2 -5.93 28.848 -4.989 1 63.25 ? C1B COA 501 A 1 HETATM 12 C C2B COA . . . B 2 -7.032 29.711 -4.458 1 63.77 ? C2B COA 501 A 1 HETATM 13 O O2B COA . . . B 2 -6.288 30.422 -3.466 1 67.37 ? O2B COA 501 A 1 HETATM 14 C C3B COA . . . B 2 -8.163 28.786 -3.947 1 67.77 ? C3B COA 501 A 1 HETATM 15 O O3B COA . . . B 2 -8.789 29.387 -2.763 1 78.22 ? O3B COA 501 A 1 HETATM 16 P P3B COA . . . B 2 -8.092 29.649 -1.197 1 112.51 ? P3B COA 501 A 1 HETATM 17 O O7A COA . . . B 2 -6.593 29.307 -1.194 1 85.85 ? O7A COA 501 A 1 HETATM 18 O O8A COA . . . B 2 -8.317 31.08 -0.609 1 79.18 ? O8A COA 501 A 1 HETATM 19 O O9A COA . . . B 2 -8.782 28.778 -0.146 1 99.3 ? O9A COA 501 A 1 HETATM 20 C C4B COA . . . B 2 -7.542 27.418 -3.733 1 66.23 ? C4B COA 501 A 1 HETATM 21 O O4B COA . . . B 2 -6.248 27.407 -4.392 1 63.84 ? O4B COA 501 A 1 HETATM 22 C C5B COA . . . B 2 -8.506 26.358 -4.259 1 65.25 ? C5B COA 501 A 1 HETATM 23 O O5B COA . . . B 2 -8.304 26.14 -5.633 1 60.1 ? O5B COA 501 A 1 HETATM 24 P P1A COA . . . B 2 -9.705 25.825 -6.519 1 56.18 ? P1A COA 501 A 1 HETATM 25 O O1A COA . . . B 2 -9.567 26.083 -8.02 1 58.42 ? O1A COA 501 A 1 HETATM 26 O O2A COA . . . B 2 -10.9 26.631 -6.049 1 59.65 ? O2A COA 501 A 1 HETATM 27 O O3A COA . . . B 2 -10.029 24.259 -6.257 1 69.87 ? O3A COA 501 A 1 HETATM 28 P P2A COA . . . B 2 -11.236 23.674 -5.27 1 57.58 ? P2A COA 501 A 1 HETATM 29 O O4A COA . . . B 2 -12.079 24.711 -4.593 1 63.27 ? O4A COA 501 A 1 HETATM 30 O O5A COA . . . B 2 -12.092 22.798 -6.135 1 67.7 ? O5A COA 501 A 1 HETATM 31 O O6A COA . . . B 2 -10.462 22.941 -4.053 1 68.02 ? O6A COA 501 A 1 HETATM 32 C CBP COA . . . B 2 -8.601 21.553 -3.872 1 71.16 ? CBP COA 501 A 1 HETATM 33 C CCP COA . . . B 2 -10.014 21.717 -4.411 1 73.51 ? CCP COA 501 A 1 HETATM 34 C CDP COA . . . B 2 -7.643 22.212 -4.957 1 68.02 ? CDP COA 501 A 1 HETATM 35 C CEP COA . . . B 2 -8.435 22.228 -2.46 1 65.04 ? CEP COA 501 A 1 HETATM 36 C CAP COA . . . B 2 -8.428 20.04 -3.784 1 71.99 ? CAP COA 501 A 1 HETATM 37 O OAP COA . . . B 2 -7.037 19.719 -3.68 1 80.83 ? OAP COA 501 A 1 HETATM 38 C C9P COA . . . B 2 -9.167 19.522 -2.56 1 74.36 ? C9P COA 501 A 1 HETATM 39 O O9P COA . . . B 2 -8.569 18.941 -1.669 1 76.13 ? O9P COA 501 A 1 HETATM 40 N N8P COA . . . B 2 -10.45 19.74 -2.536 1 76.19 ? N8P COA 501 A 1 HETATM 41 C C7P COA . . . B 2 -11.259 19.096 -1.555 1 81.94 ? C7P COA 501 A 1 HETATM 42 C C6P COA . . . B 2 -12.374 20.005 -1.048 1 83.47 ? C6P COA 501 A 1 HETATM 43 C C5P COA . . . B 2 -13.552 19.17 -0.604 1 91.55 ? C5P COA 501 A 1 HETATM 44 O O5P COA . . . B 2 -14.307 18.677 -1.426 1 90.71 ? O5P COA 501 A 1 HETATM 45 N N4P COA . . . B 2 -13.707 19.013 0.708 1 98.14 ? N4P COA 501 A 1 HETATM 46 C C3P COA . . . B 2 -14.938 19.387 1.376 1 95.51 ? C3P COA 501 A 1 HETATM 47 C C2P COA . . . B 2 -16.168 18.878 0.634 1 100.29 ? C2P COA 501 A 1 HETATM 48 S S1P COA . . . B 2 -17.061 20.277 -0.087 1 108.74 ? S1P COA 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #