data_6I2U # _model_server_result.job_id 47rEvLfb384LALor4U9W3g _model_server_result.datetime_utc '2024-12-27 04:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 6I2U # _exptl.entry_id 6I2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I2U _cell.length_a 80.89 _cell.length_b 80.89 _cell.length_c 173.34 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O ASP 84 A ASP 202 1_555 G C4 PEG . A PEG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale2 A N THR 86 A THR 204 1_555 G O4 PEG . A PEG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale3 A C ARG 168 A ARG 286 1_555 A N TPO 169 A TPO 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C TPO 169 A TPO 287 1_555 A N TPO 170 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C TPO 170 A TPO 288 1_555 A N LEU 171 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 A SG CYS 172 A CYS 290 1_555 B S1P COA . A COA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A OD1 ASN 143 A ASN 261 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A OD1 ASP 156 A ASP 274 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 A OD2 ASP 156 A ASP 274 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 B O5A COA . A COA 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 B O2A COA . A COA 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc6 B O4A COA . A COA 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc7 C MG MG . A MG 502 1_555 J O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? metalc ? metalc8 C MG MG . A MG 502 1_555 J O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc9 C MG MG . A MG 502 1_555 J O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc10 D MG MG . A MG 503 1_555 J O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc11 E MG MG . A MG 504 1_555 J O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 323 n n C1 C2 PEG sing 324 n n C1 H11 PEG sing 325 n n C1 H12 PEG sing 326 n n O1 HO1 PEG sing 327 n n C2 O2 PEG sing 328 n n C2 H21 PEG sing 329 n n C2 H22 PEG sing 330 n n O2 C3 PEG sing 331 n n C3 C4 PEG sing 332 n n C3 H31 PEG sing 333 n n C3 H32 PEG sing 334 n n C4 O4 PEG sing 335 n n C4 H41 PEG sing 336 n n C4 H42 PEG sing 337 n n O4 HO4 PEG sing 338 n n # _atom_sites.entry_id 6I2U _atom_sites.fract_transf_matrix[1][1] 0.012362 _atom_sites.fract_transf_matrix[1][2] 0.007137 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 1 COA COA . C 3 MG A 1 502 2 MG MG . D 3 MG A 1 503 3 MG MG . E 3 MG A 1 504 4 MG MG . F 3 MG A 1 505 5 MG MG . G 4 PEG A 1 506 6 PEG PEG . H 4 PEG A 1 507 7 PEG PEG . I 4 PEG A 1 508 8 PEG PEG . J 5 HOH A 1 601 5 HOH HOH . J 5 HOH A 2 602 18 HOH HOH . J 5 HOH A 3 603 2 HOH HOH . J 5 HOH A 4 604 3 HOH HOH . J 5 HOH A 5 605 1 HOH HOH . J 5 HOH A 6 606 16 HOH HOH . J 5 HOH A 7 607 4 HOH HOH . J 5 HOH A 8 608 24 HOH HOH . J 5 HOH A 9 609 6 HOH HOH . J 5 HOH A 10 610 7 HOH HOH . J 5 HOH A 11 611 11 HOH HOH . J 5 HOH A 12 612 8 HOH HOH . J 5 HOH A 13 613 9 HOH HOH . J 5 HOH A 14 614 26 HOH HOH . J 5 HOH A 15 615 10 HOH HOH . J 5 HOH A 16 616 21 HOH HOH . J 5 HOH A 17 617 22 HOH HOH . J 5 HOH A 18 618 23 HOH HOH . J 5 HOH A 19 619 20 HOH HOH . J 5 HOH A 20 620 17 HOH HOH . J 5 HOH A 21 621 13 HOH HOH . J 5 HOH A 22 622 14 HOH HOH . J 5 HOH A 23 623 15 HOH HOH . J 5 HOH A 24 624 19 HOH HOH . J 5 HOH A 25 625 25 HOH HOH . J 5 HOH A 26 626 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . H 4 1.545 33.944 0.097 1 80.59 ? C1 PEG 507 A 1 HETATM 2 O O1 PEG . . . H 4 1.733 33.254 1.328 1 76.2 ? O1 PEG 507 A 1 HETATM 3 C C2 PEG . . . H 4 0.108 33.775 -0.516 1 88.85 ? C2 PEG 507 A 1 HETATM 4 O O2 PEG . . . H 4 -0.595 35.032 -0.69 1 86.25 ? O2 PEG 507 A 1 HETATM 5 C C3 PEG . . . H 4 -0.487 35.691 -1.935 1 83.09 ? C3 PEG 507 A 1 HETATM 6 C C4 PEG . . . H 4 -1.217 37.017 -1.828 1 85.84 ? C4 PEG 507 A 1 HETATM 7 O O4 PEG . . . H 4 -0.302 38.052 -1.497 1 80.39 ? O4 PEG 507 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #