data_6I3C # _model_server_result.job_id Co8hqh7ambqzoqJRxo12eg _model_server_result.datetime_utc '2024-11-22 05:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6I3C # _exptl.entry_id 6I3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.106 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-DINITROCATECHOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.42 _cell.angle_gamma 90 _cell.entry_id 6I3C _cell.length_a 43.694 _cell.length_b 61.749 _cell.length_c 46.071 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 152 A ASP 141 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 A OD2 ASP 180 A ASP 169 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A OD1 ASN 181 A ASN 170 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 B MG MG . A MG 301 1_555 D O1 DNC . A DNC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc5 B MG MG . A MG 301 1_555 D O2 DNC . A DNC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc6 B MG MG . A MG 301 1_555 E O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C6 H4 N2 O6' _chem_comp.formula_weight 200.106 _chem_comp.id DNC _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-DINITROCATECHOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DNC sing 83 n n C1 C2 DNC doub 84 n y C1 C6 DNC sing 85 n y O1 HO1 DNC sing 86 n n C2 O2 DNC sing 87 n n C2 C3 DNC sing 88 n y O2 HO2 DNC sing 89 n n C3 N1 DNC sing 90 n n C3 C4 DNC doub 91 n y N1 O3 DNC sing 92 n n N1 O4 DNC doub 93 n n C4 C5 DNC sing 94 n y C4 H4 DNC sing 95 n n C5 N2 DNC sing 96 n n C5 C6 DNC doub 97 n y N2 O5 DNC sing 98 n n N2 O6 DNC doub 99 n n C6 H6 DNC sing 100 n n # _atom_sites.entry_id 6I3C _atom_sites.fract_transf_matrix[1][1] 0.022886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011369 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 216 MG MG . C 3 SAM A 1 302 217 SAM SAM . D 4 DNC A 1 303 218 DNC DNC . E 5 HOH A 1 401 249 HOH HOH . E 5 HOH A 2 402 421 HOH HOH . E 5 HOH A 3 403 377 HOH HOH . E 5 HOH A 4 404 333 HOH HOH . E 5 HOH A 5 405 420 HOH HOH . E 5 HOH A 6 406 408 HOH HOH . E 5 HOH A 7 407 416 HOH HOH . E 5 HOH A 8 408 289 HOH HOH . E 5 HOH A 9 409 398 HOH HOH . E 5 HOH A 10 410 350 HOH HOH . E 5 HOH A 11 411 330 HOH HOH . E 5 HOH A 12 412 367 HOH HOH . E 5 HOH A 13 413 388 HOH HOH . E 5 HOH A 14 414 235 HOH HOH . E 5 HOH A 15 415 374 HOH HOH . E 5 HOH A 16 416 300 HOH HOH . E 5 HOH A 17 417 426 HOH HOH . E 5 HOH A 18 418 417 HOH HOH . E 5 HOH A 19 419 346 HOH HOH . E 5 HOH A 20 420 401 HOH HOH . E 5 HOH A 21 421 303 HOH HOH . E 5 HOH A 22 422 253 HOH HOH . E 5 HOH A 23 423 219 HOH HOH . E 5 HOH A 24 424 314 HOH HOH . E 5 HOH A 25 425 392 HOH HOH . E 5 HOH A 26 426 306 HOH HOH . E 5 HOH A 27 427 278 HOH HOH . E 5 HOH A 28 428 403 HOH HOH . E 5 HOH A 29 429 424 HOH HOH . E 5 HOH A 30 430 378 HOH HOH . E 5 HOH A 31 431 310 HOH HOH . E 5 HOH A 32 432 325 HOH HOH . E 5 HOH A 33 433 344 HOH HOH . E 5 HOH A 34 434 415 HOH HOH . E 5 HOH A 35 435 368 HOH HOH . E 5 HOH A 36 436 220 HOH HOH . E 5 HOH A 37 437 307 HOH HOH . E 5 HOH A 38 438 304 HOH HOH . E 5 HOH A 39 439 227 HOH HOH . E 5 HOH A 40 440 277 HOH HOH . E 5 HOH A 41 441 302 HOH HOH . E 5 HOH A 42 442 371 HOH HOH . E 5 HOH A 43 443 283 HOH HOH . E 5 HOH A 44 444 311 HOH HOH . E 5 HOH A 45 445 328 HOH HOH . E 5 HOH A 46 446 357 HOH HOH . E 5 HOH A 47 447 299 HOH HOH . E 5 HOH A 48 448 243 HOH HOH . E 5 HOH A 49 449 354 HOH HOH . E 5 HOH A 50 450 257 HOH HOH . E 5 HOH A 51 451 265 HOH HOH . E 5 HOH A 52 452 406 HOH HOH . E 5 HOH A 53 453 237 HOH HOH . E 5 HOH A 54 454 343 HOH HOH . E 5 HOH A 55 455 268 HOH HOH . E 5 HOH A 56 456 242 HOH HOH . E 5 HOH A 57 457 290 HOH HOH . E 5 HOH A 58 458 318 HOH HOH . E 5 HOH A 59 459 263 HOH HOH . E 5 HOH A 60 460 281 HOH HOH . E 5 HOH A 61 461 251 HOH HOH . E 5 HOH A 62 462 397 HOH HOH . E 5 HOH A 63 463 222 HOH HOH . E 5 HOH A 64 464 261 HOH HOH . E 5 HOH A 65 465 223 HOH HOH . E 5 HOH A 66 466 246 HOH HOH . E 5 HOH A 67 467 274 HOH HOH . E 5 HOH A 68 468 254 HOH HOH . E 5 HOH A 69 469 264 HOH HOH . E 5 HOH A 70 470 339 HOH HOH . E 5 HOH A 71 471 390 HOH HOH . E 5 HOH A 72 472 272 HOH HOH . E 5 HOH A 73 473 228 HOH HOH . E 5 HOH A 74 474 232 HOH HOH . E 5 HOH A 75 475 221 HOH HOH . E 5 HOH A 76 476 312 HOH HOH . E 5 HOH A 77 477 323 HOH HOH . E 5 HOH A 78 478 285 HOH HOH . E 5 HOH A 79 479 372 HOH HOH . E 5 HOH A 80 480 229 HOH HOH . E 5 HOH A 81 481 241 HOH HOH . E 5 HOH A 82 482 315 HOH HOH . E 5 HOH A 83 483 248 HOH HOH . E 5 HOH A 84 484 238 HOH HOH . E 5 HOH A 85 485 224 HOH HOH . E 5 HOH A 86 486 252 HOH HOH . E 5 HOH A 87 487 386 HOH HOH . E 5 HOH A 88 488 309 HOH HOH . E 5 HOH A 89 489 313 HOH HOH . E 5 HOH A 90 490 255 HOH HOH . E 5 HOH A 91 491 288 HOH HOH . E 5 HOH A 92 492 256 HOH HOH . E 5 HOH A 93 493 287 HOH HOH . E 5 HOH A 94 494 280 HOH HOH . E 5 HOH A 95 495 395 HOH HOH . E 5 HOH A 96 496 294 HOH HOH . E 5 HOH A 97 497 394 HOH HOH . E 5 HOH A 98 498 273 HOH HOH . E 5 HOH A 99 499 364 HOH HOH . E 5 HOH A 100 500 411 HOH HOH . E 5 HOH A 101 501 324 HOH HOH . E 5 HOH A 102 502 270 HOH HOH . E 5 HOH A 103 503 321 HOH HOH . E 5 HOH A 104 504 352 HOH HOH . E 5 HOH A 105 505 267 HOH HOH . E 5 HOH A 106 506 297 HOH HOH . E 5 HOH A 107 507 383 HOH HOH . E 5 HOH A 108 508 271 HOH HOH . E 5 HOH A 109 509 291 HOH HOH . E 5 HOH A 110 510 226 HOH HOH . E 5 HOH A 111 511 305 HOH HOH . E 5 HOH A 112 512 320 HOH HOH . E 5 HOH A 113 513 393 HOH HOH . E 5 HOH A 114 514 245 HOH HOH . E 5 HOH A 115 515 250 HOH HOH . E 5 HOH A 116 516 231 HOH HOH . E 5 HOH A 117 517 275 HOH HOH . E 5 HOH A 118 518 349 HOH HOH . E 5 HOH A 119 519 247 HOH HOH . E 5 HOH A 120 520 262 HOH HOH . E 5 HOH A 121 521 348 HOH HOH . E 5 HOH A 122 522 319 HOH HOH . E 5 HOH A 123 523 230 HOH HOH . E 5 HOH A 124 524 240 HOH HOH . E 5 HOH A 125 525 347 HOH HOH . E 5 HOH A 126 526 381 HOH HOH . E 5 HOH A 127 527 375 HOH HOH . E 5 HOH A 128 528 351 HOH HOH . E 5 HOH A 129 529 225 HOH HOH . E 5 HOH A 130 530 337 HOH HOH . E 5 HOH A 131 531 236 HOH HOH . E 5 HOH A 132 532 301 HOH HOH . E 5 HOH A 133 533 370 HOH HOH . E 5 HOH A 134 534 234 HOH HOH . E 5 HOH A 135 535 362 HOH HOH . E 5 HOH A 136 536 338 HOH HOH . E 5 HOH A 137 537 341 HOH HOH . E 5 HOH A 138 538 292 HOH HOH . E 5 HOH A 139 539 258 HOH HOH . E 5 HOH A 140 540 239 HOH HOH . E 5 HOH A 141 541 389 HOH HOH . E 5 HOH A 142 542 387 HOH HOH . E 5 HOH A 143 543 276 HOH HOH . E 5 HOH A 144 544 266 HOH HOH . E 5 HOH A 145 545 282 HOH HOH . E 5 HOH A 146 546 345 HOH HOH . E 5 HOH A 147 547 295 HOH HOH . E 5 HOH A 148 548 244 HOH HOH . E 5 HOH A 149 549 284 HOH HOH . E 5 HOH A 150 550 259 HOH HOH . E 5 HOH A 151 551 332 HOH HOH . E 5 HOH A 152 552 260 HOH HOH . E 5 HOH A 153 553 336 HOH HOH . E 5 HOH A 154 554 334 HOH HOH . E 5 HOH A 155 555 379 HOH HOH . E 5 HOH A 156 556 399 HOH HOH . E 5 HOH A 157 557 317 HOH HOH . E 5 HOH A 158 558 340 HOH HOH . E 5 HOH A 159 559 409 HOH HOH . E 5 HOH A 160 560 400 HOH HOH . E 5 HOH A 161 561 373 HOH HOH . E 5 HOH A 162 562 404 HOH HOH . E 5 HOH A 163 563 335 HOH HOH . E 5 HOH A 164 564 407 HOH HOH . E 5 HOH A 165 565 385 HOH HOH . E 5 HOH A 166 566 410 HOH HOH . E 5 HOH A 167 567 360 HOH HOH . E 5 HOH A 168 568 402 HOH HOH . E 5 HOH A 169 569 293 HOH HOH . E 5 HOH A 170 570 331 HOH HOH . E 5 HOH A 171 571 355 HOH HOH . E 5 HOH A 172 572 412 HOH HOH . E 5 HOH A 173 573 356 HOH HOH . E 5 HOH A 174 574 423 HOH HOH . E 5 HOH A 175 575 296 HOH HOH . E 5 HOH A 176 576 279 HOH HOH . E 5 HOH A 177 577 425 HOH HOH . E 5 HOH A 178 578 382 HOH HOH . E 5 HOH A 179 579 327 HOH HOH . E 5 HOH A 180 580 418 HOH HOH . E 5 HOH A 181 581 342 HOH HOH . E 5 HOH A 182 582 353 HOH HOH . E 5 HOH A 183 583 384 HOH HOH . E 5 HOH A 184 584 413 HOH HOH . E 5 HOH A 185 585 269 HOH HOH . E 5 HOH A 186 586 391 HOH HOH . E 5 HOH A 187 587 396 HOH HOH . E 5 HOH A 188 588 326 HOH HOH . E 5 HOH A 189 589 422 HOH HOH . E 5 HOH A 190 590 316 HOH HOH . E 5 HOH A 191 591 365 HOH HOH . E 5 HOH A 192 592 369 HOH HOH . E 5 HOH A 193 593 419 HOH HOH . E 5 HOH A 194 594 376 HOH HOH . E 5 HOH A 195 595 298 HOH HOH . E 5 HOH A 196 596 380 HOH HOH . E 5 HOH A 197 597 359 HOH HOH . E 5 HOH A 198 598 363 HOH HOH . E 5 HOH A 199 599 329 HOH HOH . E 5 HOH A 200 600 366 HOH HOH . E 5 HOH A 201 601 358 HOH HOH . E 5 HOH A 202 602 286 HOH HOH . E 5 HOH A 203 603 233 HOH HOH . E 5 HOH A 204 604 361 HOH HOH . E 5 HOH A 205 605 308 HOH HOH . E 5 HOH A 206 606 414 HOH HOH . E 5 HOH A 207 607 405 HOH HOH . E 5 HOH A 208 608 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DNC . . . D 4 1.972 -7.539 3.539 1 9.47 ? C1 DNC 303 A 1 HETATM 2 O O1 DNC . . . D 4 1.415 -8.008 4.733 1 8.94 ? O1 DNC 303 A 1 HETATM 3 C C2 DNC . . . D 4 2.107 -6.128 3.435 1 9.7 ? C2 DNC 303 A 1 HETATM 4 O O2 DNC . . . D 4 1.784 -5.406 4.495 1 9.16 ? O2 DNC 303 A 1 HETATM 5 C C3 DNC . . . D 4 2.615 -5.6 2.176 1 9.92 ? C3 DNC 303 A 1 HETATM 6 N N1 DNC . . . D 4 2.772 -4.18 1.935 1 11.41 ? N1 DNC 303 A 1 HETATM 7 O O3 DNC . . . D 4 2.374 -3.348 2.774 1 11.16 ? O3 DNC 303 A 1 HETATM 8 O O4 DNC . . . D 4 3.367 -3.823 0.907 1 16.32 ? O4 DNC 303 A 1 HETATM 9 C C4 DNC . . . D 4 2.999 -6.459 1.157 1 11.01 ? C4 DNC 303 A 1 HETATM 10 C C5 DNC . . . D 4 2.851 -7.832 1.324 1 11.01 ? C5 DNC 303 A 1 HETATM 11 N N2 DNC . . . D 4 3.292 -8.705 0.213 1 13.69 ? N2 DNC 303 A 1 HETATM 12 O O5 DNC . . . D 4 3.711 -8.203 -0.793 1 16.77 ? O5 DNC 303 A 1 HETATM 13 O O6 DNC . . . D 4 3.29 -9.934 0.409 1 13.43 ? O6 DNC 303 A 1 HETATM 14 C C6 DNC . . . D 4 2.344 -8.394 2.513 1 10.76 ? C6 DNC 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #