data_6I3F # _model_server_result.job_id wpOvUjv8GJx34BJW9eFaOg _model_server_result.datetime_utc '2024-10-18 16:20:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":409}' # _entry.id 6I3F # _exptl.entry_id 6I3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I3F _cell.length_a 124.119 _cell.length_b 124.119 _cell.length_c 260.911 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1014 NAG 3 n C NAG 2 C 2 NAG A 2014 NAG 3 n C BMA 3 C 3 BMA A 3014 BMA 3 n C MAN 4 C 4 MAN A 4014 MAN 3 n C NAG 5 C 5 NAG A 5014 NAG 4 n D NAG 1 D 1 NAG B 1075 NAG 4 n D NAG 2 D 2 NAG B 3075 NAG 4 n D FUC 3 D 3 FUC B 2075 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 51 B CYS 51 1_555 B SG CYS 58 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 217 B CYS 217 1_555 B SG CYS 221 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 259 B CYS 259 1_555 B SG CYS 296 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 14 A ASN 14 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 75 B ASN 75 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 404 n n S O2 SO4 doub 405 n n S O3 SO4 sing 406 n n S O4 SO4 sing 407 n n # _atom_sites.entry_id 6I3F _atom_sites.fract_transf_matrix[1][1] 0.008057 _atom_sites.fract_transf_matrix[1][2] 0.004652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SO4 A 1 506 9 SO4 SO4 . F 5 SO4 A 1 507 19 SO4 SO4 . G 6 GOL A 1 508 1 GOL GOL . H 5 SO4 B 1 404 1 SO4 SO4 . I 5 SO4 B 1 405 2 SO4 SO4 . J 5 SO4 B 1 406 3 SO4 SO4 . K 5 SO4 B 1 407 4 SO4 SO4 . L 5 SO4 B 1 408 5 SO4 SO4 . M 5 SO4 B 1 409 7 SO4 SO4 . N 5 SO4 B 1 410 15 SO4 SO4 . O 5 SO4 B 1 411 18 SO4 SO4 . P 7 HOH A 1 601 1 HOH HOH . P 7 HOH A 2 602 19 HOH HOH . P 7 HOH A 3 603 263 HOH HOH . P 7 HOH A 4 604 264 HOH HOH . P 7 HOH A 5 605 44 HOH HOH . P 7 HOH A 6 606 135 HOH HOH . P 7 HOH A 7 607 16 HOH HOH . P 7 HOH A 8 608 27 HOH HOH . P 7 HOH A 9 609 262 HOH HOH . P 7 HOH A 10 610 48 HOH HOH . P 7 HOH A 11 611 31 HOH HOH . P 7 HOH A 12 612 274 HOH HOH . P 7 HOH A 13 613 229 HOH HOH . P 7 HOH A 14 614 273 HOH HOH . P 7 HOH A 15 615 267 HOH HOH . P 7 HOH A 16 616 271 HOH HOH . P 7 HOH A 17 617 71 HOH HOH . P 7 HOH A 18 618 43 HOH HOH . P 7 HOH A 19 619 223 HOH HOH . P 7 HOH A 20 620 103 HOH HOH . P 7 HOH A 21 621 60 HOH HOH . P 7 HOH A 22 622 266 HOH HOH . P 7 HOH A 23 623 7 HOH HOH . P 7 HOH A 24 624 242 HOH HOH . P 7 HOH A 25 625 276 HOH HOH . P 7 HOH A 26 626 265 HOH HOH . P 7 HOH A 27 627 10 HOH HOH . P 7 HOH A 28 628 131 HOH HOH . P 7 HOH A 29 629 238 HOH HOH . P 7 HOH A 30 630 6 HOH HOH . P 7 HOH A 31 631 247 HOH HOH . P 7 HOH A 32 632 90 HOH HOH . P 7 HOH A 33 633 108 HOH HOH . P 7 HOH A 34 634 68 HOH HOH . P 7 HOH A 35 635 225 HOH HOH . P 7 HOH A 36 636 243 HOH HOH . P 7 HOH A 37 637 78 HOH HOH . P 7 HOH A 38 638 268 HOH HOH . P 7 HOH A 39 639 240 HOH HOH . P 7 HOH A 40 640 284 HOH HOH . P 7 HOH A 41 641 205 HOH HOH . P 7 HOH A 42 642 45 HOH HOH . P 7 HOH A 43 643 286 HOH HOH . P 7 HOH A 44 644 12 HOH HOH . P 7 HOH A 45 645 47 HOH HOH . P 7 HOH A 46 646 9 HOH HOH . P 7 HOH A 47 647 212 HOH HOH . P 7 HOH A 48 648 203 HOH HOH . P 7 HOH A 49 649 88 HOH HOH . P 7 HOH A 50 650 41 HOH HOH . P 7 HOH A 51 651 95 HOH HOH . P 7 HOH A 52 652 81 HOH HOH . P 7 HOH A 53 653 104 HOH HOH . P 7 HOH A 54 654 42 HOH HOH . P 7 HOH A 55 655 279 HOH HOH . P 7 HOH A 56 656 72 HOH HOH . P 7 HOH A 57 657 97 HOH HOH . P 7 HOH A 58 658 291 HOH HOH . P 7 HOH A 59 659 289 HOH HOH . P 7 HOH A 60 660 280 HOH HOH . P 7 HOH A 61 661 82 HOH HOH . P 7 HOH A 62 662 250 HOH HOH . P 7 HOH A 63 663 50 HOH HOH . P 7 HOH A 64 664 87 HOH HOH . P 7 HOH A 65 665 159 HOH HOH . P 7 HOH A 66 666 140 HOH HOH . P 7 HOH A 67 667 96 HOH HOH . P 7 HOH A 68 668 115 HOH HOH . P 7 HOH A 69 669 114 HOH HOH . P 7 HOH A 70 670 86 HOH HOH . P 7 HOH A 71 671 292 HOH HOH . Q 7 HOH B 1 501 14 HOH HOH . Q 7 HOH B 2 502 113 HOH HOH . Q 7 HOH B 3 503 28 HOH HOH . Q 7 HOH B 4 504 194 HOH HOH . Q 7 HOH B 5 505 186 HOH HOH . Q 7 HOH B 6 506 184 HOH HOH . Q 7 HOH B 7 507 132 HOH HOH . Q 7 HOH B 8 508 64 HOH HOH . Q 7 HOH B 9 509 77 HOH HOH . Q 7 HOH B 10 510 228 HOH HOH . Q 7 HOH B 11 511 181 HOH HOH . Q 7 HOH B 12 512 2 HOH HOH . Q 7 HOH B 13 513 33 HOH HOH . Q 7 HOH B 14 514 3 HOH HOH . Q 7 HOH B 15 515 275 HOH HOH . Q 7 HOH B 16 516 211 HOH HOH . Q 7 HOH B 17 517 8 HOH HOH . Q 7 HOH B 18 518 215 HOH HOH . Q 7 HOH B 19 519 278 HOH HOH . Q 7 HOH B 20 520 234 HOH HOH . Q 7 HOH B 21 521 61 HOH HOH . Q 7 HOH B 22 522 80 HOH HOH . Q 7 HOH B 23 523 51 HOH HOH . Q 7 HOH B 24 524 167 HOH HOH . Q 7 HOH B 25 525 124 HOH HOH . Q 7 HOH B 26 526 209 HOH HOH . Q 7 HOH B 27 527 46 HOH HOH . Q 7 HOH B 28 528 133 HOH HOH . Q 7 HOH B 29 529 110 HOH HOH . Q 7 HOH B 30 530 239 HOH HOH . Q 7 HOH B 31 531 195 HOH HOH . Q 7 HOH B 32 532 117 HOH HOH . Q 7 HOH B 33 533 25 HOH HOH . Q 7 HOH B 34 534 35 HOH HOH . Q 7 HOH B 35 535 29 HOH HOH . Q 7 HOH B 36 536 52 HOH HOH . Q 7 HOH B 37 537 161 HOH HOH . Q 7 HOH B 38 538 21 HOH HOH . Q 7 HOH B 39 539 24 HOH HOH . Q 7 HOH B 40 540 74 HOH HOH . Q 7 HOH B 41 541 193 HOH HOH . Q 7 HOH B 42 542 119 HOH HOH . Q 7 HOH B 43 543 129 HOH HOH . Q 7 HOH B 44 544 191 HOH HOH . Q 7 HOH B 45 545 196 HOH HOH . Q 7 HOH B 46 546 22 HOH HOH . Q 7 HOH B 47 547 30 HOH HOH . Q 7 HOH B 48 548 222 HOH HOH . Q 7 HOH B 49 549 36 HOH HOH . Q 7 HOH B 50 550 130 HOH HOH . Q 7 HOH B 51 551 76 HOH HOH . Q 7 HOH B 52 552 57 HOH HOH . Q 7 HOH B 53 553 105 HOH HOH . Q 7 HOH B 54 554 34 HOH HOH . Q 7 HOH B 55 555 56 HOH HOH . Q 7 HOH B 56 556 65 HOH HOH . Q 7 HOH B 57 557 58 HOH HOH . Q 7 HOH B 58 558 79 HOH HOH . Q 7 HOH B 59 559 169 HOH HOH . Q 7 HOH B 60 560 101 HOH HOH . Q 7 HOH B 61 561 59 HOH HOH . Q 7 HOH B 62 562 162 HOH HOH . Q 7 HOH B 63 563 32 HOH HOH . Q 7 HOH B 64 564 231 HOH HOH . Q 7 HOH B 65 565 106 HOH HOH . Q 7 HOH B 66 566 109 HOH HOH . Q 7 HOH B 67 567 73 HOH HOH . Q 7 HOH B 68 568 20 HOH HOH . Q 7 HOH B 69 569 180 HOH HOH . Q 7 HOH B 70 570 11 HOH HOH . Q 7 HOH B 71 571 160 HOH HOH . Q 7 HOH B 72 572 156 HOH HOH . Q 7 HOH B 73 573 232 HOH HOH . Q 7 HOH B 74 574 70 HOH HOH . Q 7 HOH B 75 575 99 HOH HOH . Q 7 HOH B 76 576 214 HOH HOH . Q 7 HOH B 77 577 145 HOH HOH . Q 7 HOH B 78 578 107 HOH HOH . Q 7 HOH B 79 579 53 HOH HOH . Q 7 HOH B 80 580 165 HOH HOH . Q 7 HOH B 81 581 127 HOH HOH . Q 7 HOH B 82 582 125 HOH HOH . Q 7 HOH B 83 583 112 HOH HOH . Q 7 HOH B 84 584 187 HOH HOH . Q 7 HOH B 85 585 111 HOH HOH . Q 7 HOH B 86 586 13 HOH HOH . Q 7 HOH B 87 587 210 HOH HOH . Q 7 HOH B 88 588 221 HOH HOH . Q 7 HOH B 89 589 188 HOH HOH . Q 7 HOH B 90 590 197 HOH HOH . Q 7 HOH B 91 591 189 HOH HOH . Q 7 HOH B 92 592 62 HOH HOH . Q 7 HOH B 93 593 290 HOH HOH . Q 7 HOH B 94 594 163 HOH HOH . Q 7 HOH B 95 595 134 HOH HOH . Q 7 HOH B 96 596 147 HOH HOH . Q 7 HOH B 97 597 63 HOH HOH . Q 7 HOH B 98 598 224 HOH HOH . Q 7 HOH B 99 599 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . M 5 -46.94 78.072 -63.406 1 95.9 ? S SO4 409 B 1 HETATM 2 O O1 SO4 . . . M 5 -46.586 78.743 -64.628 1 96.33 ? O1 SO4 409 B 1 HETATM 3 O O2 SO4 . . . M 5 -48.11 77.263 -63.625 1 95.47 ? O2 SO4 409 B 1 HETATM 4 O O3 SO4 . . . M 5 -47.213 79.05 -62.387 1 93.83 ? O3 SO4 409 B 1 HETATM 5 O O4 SO4 . . . M 5 -45.849 77.233 -62.987 1 93.38 ? O4 SO4 409 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #