data_6I3S # _model_server_result.job_id qGukNDS-GlHDdqmT0zR2VQ _model_server_result.datetime_utc '2024-11-04 23:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6I3S # _exptl.entry_id 6I3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.312 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3~{S},3'~{R},3'~{a}~{S},6'~{a}~{R})-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-(cyclopropylmethyl)spiro[1~{H}-indole-3,2'-3~{a},6~{a}-dihydro-3~{H}-pyrrolo[3,4-b]pyrrole]-2,4'-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I3S _cell.length_a 56.064 _cell.length_b 56.064 _cell.length_c 105.119 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H18 Cl2 F N3 O2' _chem_comp.formula_weight 458.312 _chem_comp.id H28 _chem_comp.mon_nstd_flag . _chem_comp.name "(3~{S},3'~{R},3'~{a}~{S},6'~{a}~{R})-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-(cyclopropylmethyl)spiro[1~{H}-indole-3,2'-3~{a},6~{a}-dihydro-3~{H}-pyrrolo[3,4-b]pyrrole]-2,4'-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C11 H28 doub 142 n n CL1 C2 H28 sing 143 n n F34 C33 H28 sing 144 n n C11 N13 H28 sing 145 n n C11 C9 H28 sing 146 n n C2 C33 H28 doub 147 n y C2 C3 H28 sing 148 n y N13 C14 H28 doub 149 n n C33 C6 H28 sing 150 n y C3 C4 H28 doub 151 n y C6 C7 H28 sing 152 n n C6 C5 H28 doub 153 n y C4 C5 H28 sing 154 n y C7 C9 H28 sing 155 n n C7 C22 H28 sing 156 n n C9 C15 H28 sing 157 n n C14 C15 H28 sing 158 n n C31 C30 H28 doub 159 n y C31 C32 H28 sing 160 n y C30 C28 H28 sing 161 n y C15 N17 H28 sing 162 n n C22 C32 H28 sing 163 n n C22 N17 H28 sing 164 n n C22 C23 H28 sing 165 n n C32 C26 H28 doub 166 n y N17 C18 H28 sing 167 n n C28 CL9 H28 sing 168 n n C28 C27 H28 doub 169 n y C21 C19 H28 sing 170 n n C21 C20 H28 sing 171 n n C26 C27 H28 sing 172 n y C26 N25 H28 sing 173 n n C23 O24 H28 doub 174 n n C23 N25 H28 sing 175 n n C19 C18 H28 sing 176 n n C19 C20 H28 sing 177 n n C4 H1 H28 sing 178 n n C5 H2 H28 sing 179 n n C7 H3 H28 sing 180 n n C15 H4 H28 sing 181 n n C20 H5 H28 sing 182 n n C20 H6 H28 sing 183 n n C21 H7 H28 sing 184 n n C21 H8 H28 sing 185 n n C3 H9 H28 sing 186 n n C9 H10 H28 sing 187 n n C14 H11 H28 sing 188 n n C18 H13 H28 sing 189 n n C18 H14 H28 sing 190 n n C19 H15 H28 sing 191 n n N25 H16 H28 sing 192 n n C27 H17 H28 sing 193 n n C30 H18 H28 sing 194 n n C31 H19 H28 sing 195 n n # _atom_sites.entry_id 6I3S _atom_sites.fract_transf_matrix[1][1] 0.017837 _atom_sites.fract_transf_matrix[1][2] 0.010298 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H28 A 1 201 1 H28 LIG . C 3 GOL A 1 202 1 GOL GOL . D 4 SO4 A 1 203 2 SO4 SO4 . E 4 SO4 A 1 204 3 SO4 SO4 . F 5 HOH A 1 301 36 HOH HOH . F 5 HOH A 2 302 22 HOH HOH . F 5 HOH A 3 303 7 HOH HOH . F 5 HOH A 4 304 23 HOH HOH . F 5 HOH A 5 305 14 HOH HOH . F 5 HOH A 6 306 39 HOH HOH . F 5 HOH A 7 307 19 HOH HOH . F 5 HOH A 8 308 6 HOH HOH . F 5 HOH A 9 309 32 HOH HOH . F 5 HOH A 10 310 30 HOH HOH . F 5 HOH A 11 311 51 HOH HOH . F 5 HOH A 12 312 34 HOH HOH . F 5 HOH A 13 313 16 HOH HOH . F 5 HOH A 14 314 3 HOH HOH . F 5 HOH A 15 315 2 HOH HOH . F 5 HOH A 16 316 20 HOH HOH . F 5 HOH A 17 317 44 HOH HOH . F 5 HOH A 18 318 50 HOH HOH . F 5 HOH A 19 319 41 HOH HOH . F 5 HOH A 20 320 27 HOH HOH . F 5 HOH A 21 321 9 HOH HOH . F 5 HOH A 22 322 53 HOH HOH . F 5 HOH A 23 323 47 HOH HOH . F 5 HOH A 24 324 35 HOH HOH . F 5 HOH A 25 325 26 HOH HOH . F 5 HOH A 26 326 15 HOH HOH . F 5 HOH A 27 327 28 HOH HOH . F 5 HOH A 28 328 24 HOH HOH . F 5 HOH A 29 329 45 HOH HOH . F 5 HOH A 30 330 8 HOH HOH . F 5 HOH A 31 331 5 HOH HOH . F 5 HOH A 32 332 43 HOH HOH . F 5 HOH A 33 333 46 HOH HOH . F 5 HOH A 34 334 13 HOH HOH . F 5 HOH A 35 335 38 HOH HOH . F 5 HOH A 36 336 17 HOH HOH . F 5 HOH A 37 337 11 HOH HOH . F 5 HOH A 38 338 10 HOH HOH . F 5 HOH A 39 339 52 HOH HOH . F 5 HOH A 40 340 12 HOH HOH . F 5 HOH A 41 341 40 HOH HOH . F 5 HOH A 42 342 42 HOH HOH . F 5 HOH A 43 343 48 HOH HOH . F 5 HOH A 44 344 25 HOH HOH . F 5 HOH A 45 345 49 HOH HOH . F 5 HOH A 46 346 33 HOH HOH . F 5 HOH A 47 347 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 H28 . . . B 2 -3.984 8.874 -1.303 1 18.8 ? C4 H28 201 A 1 HETATM 2 C C5 H28 . . . B 2 -5.284 9.306 -1.029 1 22.27 ? C5 H28 201 A 1 HETATM 3 C C6 H28 . . . B 2 -5.708 10.572 -1.475 1 15.05 ? C6 H28 201 A 1 HETATM 4 C C7 H28 . . . B 2 -7.105 11.157 -1.243 1 14.65 ? C7 H28 201 A 1 HETATM 5 C C15 H28 . . . B 2 -9.246 10.727 -0.135 1 17.28 ? C15 H28 201 A 1 HETATM 6 C C20 H28 . . . B 2 -10.785 14.301 2.467 1 17.06 ? C20 H28 201 A 1 HETATM 7 C C21 H28 . . . B 2 -10.541 14.633 0.983 1 17.86 ? C21 H28 201 A 1 HETATM 8 C C22 H28 . . . B 2 -7.224 11.92 0.099 1 18.64 ? C22 H28 201 A 1 HETATM 9 C C26 H28 . . . B 2 -5.622 13.219 1.189 1 17.89 ? C26 H28 201 A 1 HETATM 10 C C28 H28 . . . B 2 -4.959 15.478 0.691 1 15.66 ? C28 H28 201 A 1 HETATM 11 CL CL1 H28 . . . B 2 -2.445 11.983 -3.372 1 20.39 ? CL1 H28 201 A 1 HETATM 12 C C2 H28 . . . B 2 -3.508 10.918 -2.478 1 18.74 ? C2 H28 201 A 1 HETATM 13 C C3 H28 . . . B 2 -3.112 9.67 -2.024 1 17.17 ? C3 H28 201 A 1 HETATM 14 C C9 H28 . . . B 2 -8.259 10.138 -1.185 1 14.82 ? C9 H28 201 A 1 HETATM 15 C C11 H28 . . . B 2 -9.034 10.035 -2.498 1 16.96 ? C11 H28 201 A 1 HETATM 16 O O12 H28 . . . B 2 -8.592 9.626 -3.564 1 15.92 ? O12 H28 201 A 1 HETATM 17 N N13 H28 . . . B 2 -10.311 10.419 -2.336 1 14.17 ? N13 H28 201 A 1 HETATM 18 C C14 H28 . . . B 2 -10.567 10.863 -0.961 1 15.66 ? C14 H28 201 A 1 HETATM 19 N N17 H28 . . . B 2 -8.694 12.054 0.233 1 14.87 ? N17 H28 201 A 1 HETATM 20 C C18 H28 . . . B 2 -9.16 12.53 1.569 1 19.76 ? C18 H28 201 A 1 HETATM 21 C C19 H28 . . . B 2 -10.537 13.19 1.462 1 22.82 ? C19 H28 201 A 1 HETATM 22 C C23 H28 . . . B 2 -6.602 11.167 1.276 1 17.43 ? C23 H28 201 A 1 HETATM 23 O O24 H28 . . . B 2 -6.878 10.046 1.633 1 20.44 ? O24 H28 201 A 1 HETATM 24 N N25 H28 . . . B 2 -5.686 11.979 1.838 1 16.93 ? N25 H28 201 A 1 HETATM 25 C C27 H28 . . . B 2 -4.836 14.339 1.477 1 14.09 ? C27 H28 201 A 1 HETATM 26 CL CL9 H28 . . . B 2 -4.022 16.885 0.996 1 20.01 ? CL9 H28 201 A 1 HETATM 27 C C30 H28 . . . B 2 -5.869 15.515 -0.352 1 14.45 ? C30 H28 201 A 1 HETATM 28 C C31 H28 . . . B 2 -6.673 14.425 -0.645 1 15.15 ? C31 H28 201 A 1 HETATM 29 C C32 H28 . . . B 2 -6.537 13.262 0.126 1 15.72 ? C32 H28 201 A 1 HETATM 30 C C33 H28 . . . B 2 -4.798 11.363 -2.193 1 15.8 ? C33 H28 201 A 1 HETATM 31 F F34 H28 . . . B 2 -5.141 12.582 -2.657 1 17.54 ? F34 H28 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #