data_6I3T # _model_server_result.job_id zIlOaJRwlLB5Fi_FuDn4DQ _model_server_result.datetime_utc '2024-11-23 21:25:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6I3T # _exptl.entry_id 6I3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I3T _cell.length_a 88.056 _cell.length_b 88.056 _cell.length_c 110.156 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 96 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 96 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.931 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 153 n n CHA C4D HEM doub 154 n n CHA HHA HEM sing 155 n n CHB C4A HEM sing 156 n n CHB C1B HEM doub 157 n n CHB HHB HEM sing 158 n n CHC C4B HEM sing 159 n n CHC C1C HEM doub 160 n n CHC HHC HEM sing 161 n n CHD C4C HEM doub 162 n n CHD C1D HEM sing 163 n n CHD HHD HEM sing 164 n n C1A C2A HEM doub 165 n y C1A NA HEM sing 166 n y C2A C3A HEM sing 167 n y C2A CAA HEM sing 168 n n C3A C4A HEM doub 169 n y C3A CMA HEM sing 170 n n C4A NA HEM sing 171 n y CMA HMA HEM sing 172 n n CMA HMAA HEM sing 173 n n CMA HMAB HEM sing 174 n n CAA CBA HEM sing 175 n n CAA HAA HEM sing 176 n n CAA HAAA HEM sing 177 n n CBA CGA HEM sing 178 n n CBA HBA HEM sing 179 n n CBA HBAA HEM sing 180 n n CGA O1A HEM doub 181 n n CGA O2A HEM sing 182 n n C1B C2B HEM sing 183 n n C1B NB HEM sing 184 n n C2B C3B HEM doub 185 n n C2B CMB HEM sing 186 n n C3B C4B HEM sing 187 n n C3B CAB HEM sing 188 n n C4B NB HEM doub 189 n n CMB HMB HEM sing 190 n n CMB HMBA HEM sing 191 n n CMB HMBB HEM sing 192 n n CAB CBB HEM doub 193 n n CAB HAB HEM sing 194 n n CBB HBB HEM sing 195 n n CBB HBBA HEM sing 196 n n C1C C2C HEM sing 197 n y C1C NC HEM sing 198 n y C2C C3C HEM doub 199 n y C2C CMC HEM sing 200 n n C3C C4C HEM sing 201 n y C3C CAC HEM sing 202 n n C4C NC HEM sing 203 n y CMC HMC HEM sing 204 n n CMC HMCA HEM sing 205 n n CMC HMCB HEM sing 206 n n CAC CBC HEM doub 207 n n CAC HAC HEM sing 208 n n CBC HBC HEM sing 209 n n CBC HBCA HEM sing 210 n n C1D C2D HEM sing 211 n n C1D ND HEM doub 212 n n C2D C3D HEM doub 213 n n C2D CMD HEM sing 214 n n C3D C4D HEM sing 215 n n C3D CAD HEM sing 216 n n C4D ND HEM sing 217 n n CMD HMD HEM sing 218 n n CMD HMDA HEM sing 219 n n CMD HMDB HEM sing 220 n n CAD CBD HEM sing 221 n n CAD HAD HEM sing 222 n n CAD HADA HEM sing 223 n n CBD CGD HEM sing 224 n n CBD HBD HEM sing 225 n n CBD HBDA HEM sing 226 n n CGD O1D HEM doub 227 n n CGD O2D HEM sing 228 n n O2A H2A HEM sing 229 n n O2D H2D HEM sing 230 n n FE NA HEM sing 231 n n FE NB HEM sing 232 n n FE NC HEM sing 233 n n FE ND HEM sing 234 n n # _atom_sites.entry_id 6I3T _atom_sites.fract_transf_matrix[1][1] 0.011356 _atom_sites.fract_transf_matrix[1][2] 0.006557 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 151 HEM HEM . C 3 CMO A 1 202 152 CMO CMO . D 4 FMT A 1 203 153 FMT FMT . E 4 FMT A 1 204 154 FMT FMT . F 4 FMT A 1 205 155 FMT FMT . G 5 ACT A 1 206 156 ACT ACT . H 5 ACT A 1 207 157 ACT ACT . I 5 ACT A 1 208 158 ACT ACT . J 5 ACT A 1 209 159 ACT ACT . K 6 GOL A 1 210 160 GOL GOL . L 6 GOL A 1 211 161 GOL GOL . M 7 HOH A 1 301 58 HOH HOH . M 7 HOH A 2 302 32 HOH HOH . M 7 HOH A 3 303 72 HOH HOH . M 7 HOH A 4 304 89 HOH HOH . M 7 HOH A 5 305 67 HOH HOH . M 7 HOH A 6 306 53 HOH HOH . M 7 HOH A 7 307 13 HOH HOH . M 7 HOH A 8 308 9 HOH HOH . M 7 HOH A 9 309 4 HOH HOH . M 7 HOH A 10 310 85 HOH HOH . M 7 HOH A 11 311 73 HOH HOH . M 7 HOH A 12 312 91 HOH HOH . M 7 HOH A 13 313 25 HOH HOH . M 7 HOH A 14 314 82 HOH HOH . M 7 HOH A 15 315 87 HOH HOH . M 7 HOH A 16 316 16 HOH HOH . M 7 HOH A 17 317 92 HOH HOH . M 7 HOH A 18 318 18 HOH HOH . M 7 HOH A 19 319 7 HOH HOH . M 7 HOH A 20 320 14 HOH HOH . M 7 HOH A 21 321 71 HOH HOH . M 7 HOH A 22 322 27 HOH HOH . M 7 HOH A 23 323 55 HOH HOH . M 7 HOH A 24 324 33 HOH HOH . M 7 HOH A 25 325 30 HOH HOH . M 7 HOH A 26 326 10 HOH HOH . M 7 HOH A 27 327 19 HOH HOH . M 7 HOH A 28 328 63 HOH HOH . M 7 HOH A 29 329 24 HOH HOH . M 7 HOH A 30 330 50 HOH HOH . M 7 HOH A 31 331 57 HOH HOH . M 7 HOH A 32 332 84 HOH HOH . M 7 HOH A 33 333 97 HOH HOH . M 7 HOH A 34 334 47 HOH HOH . M 7 HOH A 35 335 20 HOH HOH . M 7 HOH A 36 336 22 HOH HOH . M 7 HOH A 37 337 3 HOH HOH . M 7 HOH A 38 338 5 HOH HOH . M 7 HOH A 39 339 8 HOH HOH . M 7 HOH A 40 340 75 HOH HOH . M 7 HOH A 41 341 70 HOH HOH . M 7 HOH A 42 342 54 HOH HOH . M 7 HOH A 43 343 1 HOH HOH . M 7 HOH A 44 344 42 HOH HOH . M 7 HOH A 45 345 78 HOH HOH . M 7 HOH A 46 346 12 HOH HOH . M 7 HOH A 47 347 34 HOH HOH . M 7 HOH A 48 348 48 HOH HOH . M 7 HOH A 49 349 2 HOH HOH . M 7 HOH A 50 350 90 HOH HOH . M 7 HOH A 51 351 69 HOH HOH . M 7 HOH A 52 352 36 HOH HOH . M 7 HOH A 53 353 11 HOH HOH . M 7 HOH A 54 354 26 HOH HOH . M 7 HOH A 55 355 66 HOH HOH . M 7 HOH A 56 356 79 HOH HOH . M 7 HOH A 57 357 38 HOH HOH . M 7 HOH A 58 358 21 HOH HOH . M 7 HOH A 59 359 29 HOH HOH . M 7 HOH A 60 360 43 HOH HOH . M 7 HOH A 61 361 94 HOH HOH . M 7 HOH A 62 362 59 HOH HOH . M 7 HOH A 63 363 49 HOH HOH . M 7 HOH A 64 364 60 HOH HOH . M 7 HOH A 65 365 31 HOH HOH . M 7 HOH A 66 366 74 HOH HOH . M 7 HOH A 67 367 86 HOH HOH . M 7 HOH A 68 368 35 HOH HOH . M 7 HOH A 69 369 81 HOH HOH . M 7 HOH A 70 370 28 HOH HOH . M 7 HOH A 71 371 61 HOH HOH . M 7 HOH A 72 372 77 HOH HOH . M 7 HOH A 73 373 17 HOH HOH . M 7 HOH A 74 374 62 HOH HOH . M 7 HOH A 75 375 23 HOH HOH . M 7 HOH A 76 376 6 HOH HOH . M 7 HOH A 77 377 15 HOH HOH . M 7 HOH A 78 378 40 HOH HOH . M 7 HOH A 79 379 64 HOH HOH . M 7 HOH A 80 380 83 HOH HOH . M 7 HOH A 81 381 51 HOH HOH . M 7 HOH A 82 382 52 HOH HOH . M 7 HOH A 83 383 44 HOH HOH . M 7 HOH A 84 384 88 HOH HOH . M 7 HOH A 85 385 65 HOH HOH . M 7 HOH A 86 386 93 HOH HOH . M 7 HOH A 87 387 56 HOH HOH . M 7 HOH A 88 388 96 HOH HOH . M 7 HOH A 89 389 37 HOH HOH . M 7 HOH A 90 390 76 HOH HOH . M 7 HOH A 91 391 41 HOH HOH . M 7 HOH A 92 392 45 HOH HOH . M 7 HOH A 93 393 46 HOH HOH . M 7 HOH A 94 394 95 HOH HOH . M 7 HOH A 95 395 68 HOH HOH . M 7 HOH A 96 396 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 18.119 56.345 35.784 1 21.58 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 13.495 54.9 35.035 1 19.51 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 14.758 50.563 36.873 1 17.98 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 19.503 51.634 36.162 1 16.74 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 16.767 56.315 35.504 1 20.57 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 15.964 57.478 35.156 1 21.04 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 14.711 57.082 34.93 1 20.49 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 14.635 55.657 35.171 1 21.05 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 13.5 57.975 34.551 1 19.42 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 16.511 58.915 35.016 1 24.41 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 16.716 59.196 33.52 1 32.08 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 17.443 60.501 33.253 1 38.2 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 16.989 61.541 33.806 1 40.62 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 18.45 60.502 32.467 1 40.62 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 13.393 53.604 35.509 1 20.83 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 12.198 52.837 35.674 1 20.17 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 12.547 51.653 36.174 1 20.4 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 13.98 51.616 36.376 1 19.95 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 10.805 53.345 35.286 1 20.63 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 11.601 50.514 36.565 1 23.8 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 11.317 50.509 37.872 1 21.65 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 16.129 50.413 36.77 1 18.4 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 16.928 49.224 36.984 1 18.95 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 18.238 49.577 36.796 1 18.36 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 18.318 50.951 36.46 1 16.95 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 16.391 47.834 37.408 1 21.15 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 19.524 48.759 36.878 1 16.8 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 19.5 47.63 37.576 1 27.52 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 19.598 53.013 36.087 1 14.93 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 20.819 53.794 36.13 1 17.05 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 20.384 55.242 36.025 1 18.17 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 18.95 55.226 35.919 1 18.8 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 22.266 53.283 36.299 1 14.97 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 21.327 56.461 36.076 1 22.35 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 21.206 56.978 37.518 1 26.46 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 22.088 58.195 37.752 1 32.37 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 22.354 58.934 36.777 1 32.16 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 22.543 58.435 38.905 1 36.58 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 15.925 55.192 35.51 1 20.4 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 14.456 52.817 35.901 1 18.99 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 17.016 51.439 36.418 1 18.39 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 18.522 53.893 35.93 1 17.89 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 16.504 53.341 35.875 1 19.5 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #