data_6I5F
#
_model_server_result.job_id            ARH5TFTXU7KspIl7s3RFAw 
_model_server_result.datetime_utc      '2025-03-09 02:04:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6i5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":916}' 
#
_entry.id    6I5F 
#
_exptl.entry_id    6I5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6I5F 
_cell.length_a            113.375 
_cell.length_b            113.525 
_cell.length_c            158.904 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6I5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 R N N 
? 4 Z N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6I5F 
_atom_sites.fract_transf_matrix[1][1]    0.00882 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 901 1 GOL GOL . 
D 2 GOL A 1 902 7 GOL GOL . 
E 2 GOL A 1 903 8 GOL GOL . 
F 2 GOL A 1 904 9 GOL GOL . 
G 2 GOL A 1 905 10 GOL GOL . 
H 2 GOL A 1 906 11 GOL GOL . 
I 2 GOL A 1 907 14 GOL GOL . 
J 2 GOL A 1 908 15 GOL GOL . 
K 2 GOL A 1 909 16 GOL GOL . 
L 2 GOL A 1 910 19 GOL GOL . 
M 3 SO4 A 1 911 1 SO4 SO4 . 
N 3 SO4 A 1 912 4 SO4 SO4 . 
O 3 SO4 A 1 913 6 SO4 SO4 . 
P 3 SO4 A 1 914 11 SO4 SO4 . 
Q 3 SO4 A 1 915 15 SO4 SO4 . 
R 4 ADP A 1 916 3 ADP ADP . 
S 2 GOL B 1 901 2 GOL GOL . 
T 2 GOL B 1 902 13 GOL GOL . 
U 2 GOL B 1 903 18 GOL GOL . 
V 3 SO4 B 1 904 7 SO4 SO4 . 
W 3 SO4 B 1 905 12 SO4 SO4 . 
X 3 SO4 B 1 906 13 SO4 SO4 . 
Y 3 SO4 B 1 907 14 SO4 SO4 . 
Z 4 ADP B 1 908 4 ADP ADP . 
AA 5 HOH A 1 1001 53 HOH HOH . 
AA 5 HOH A 2 1002 26 HOH HOH . 
AA 5 HOH A 3 1003 193 HOH HOH . 
AA 5 HOH A 4 1004 191 HOH HOH . 
AA 5 HOH A 5 1005 96 HOH HOH . 
AA 5 HOH A 6 1006 143 HOH HOH . 
AA 5 HOH A 7 1007 73 HOH HOH . 
AA 5 HOH A 8 1008 138 HOH HOH . 
AA 5 HOH A 9 1009 83 HOH HOH . 
AA 5 HOH A 10 1010 153 HOH HOH . 
AA 5 HOH A 11 1011 88 HOH HOH . 
AA 5 HOH A 12 1012 68 HOH HOH . 
AA 5 HOH A 13 1013 54 HOH HOH . 
AA 5 HOH A 14 1014 24 HOH HOH . 
AA 5 HOH A 15 1015 108 HOH HOH . 
AA 5 HOH A 16 1016 162 HOH HOH . 
AA 5 HOH A 17 1017 144 HOH HOH . 
AA 5 HOH A 18 1018 14 HOH HOH . 
AA 5 HOH A 19 1019 161 HOH HOH . 
AA 5 HOH A 20 1020 13 HOH HOH . 
AA 5 HOH A 21 1021 127 HOH HOH . 
AA 5 HOH A 22 1022 105 HOH HOH . 
AA 5 HOH A 23 1023 172 HOH HOH . 
AA 5 HOH A 24 1024 148 HOH HOH . 
AA 5 HOH A 25 1025 25 HOH HOH . 
AA 5 HOH A 26 1026 113 HOH HOH . 
AA 5 HOH A 27 1027 79 HOH HOH . 
AA 5 HOH A 28 1028 116 HOH HOH . 
AA 5 HOH A 29 1029 9 HOH HOH . 
AA 5 HOH A 30 1030 4 HOH HOH . 
AA 5 HOH A 31 1031 114 HOH HOH . 
AA 5 HOH A 32 1032 158 HOH HOH . 
AA 5 HOH A 33 1033 145 HOH HOH . 
AA 5 HOH A 34 1034 21 HOH HOH . 
AA 5 HOH A 35 1035 18 HOH HOH . 
AA 5 HOH A 36 1036 90 HOH HOH . 
AA 5 HOH A 37 1037 102 HOH HOH . 
AA 5 HOH A 38 1038 177 HOH HOH . 
AA 5 HOH A 39 1039 97 HOH HOH . 
AA 5 HOH A 40 1040 118 HOH HOH . 
AA 5 HOH A 41 1041 29 HOH HOH . 
AA 5 HOH A 42 1042 19 HOH HOH . 
AA 5 HOH A 43 1043 35 HOH HOH . 
AA 5 HOH A 44 1044 32 HOH HOH . 
AA 5 HOH A 45 1045 176 HOH HOH . 
AA 5 HOH A 46 1046 106 HOH HOH . 
AA 5 HOH A 47 1047 84 HOH HOH . 
AA 5 HOH A 48 1048 133 HOH HOH . 
AA 5 HOH A 49 1049 165 HOH HOH . 
AA 5 HOH A 50 1050 91 HOH HOH . 
AA 5 HOH A 51 1051 33 HOH HOH . 
AA 5 HOH A 52 1052 147 HOH HOH . 
AA 5 HOH A 53 1053 56 HOH HOH . 
AA 5 HOH A 54 1054 34 HOH HOH . 
AA 5 HOH A 55 1055 20 HOH HOH . 
AA 5 HOH A 56 1056 140 HOH HOH . 
AA 5 HOH A 57 1057 81 HOH HOH . 
AA 5 HOH A 58 1058 100 HOH HOH . 
AA 5 HOH A 59 1059 164 HOH HOH . 
AA 5 HOH A 60 1060 171 HOH HOH . 
AA 5 HOH A 61 1061 151 HOH HOH . 
AA 5 HOH A 62 1062 22 HOH HOH . 
AA 5 HOH A 63 1063 169 HOH HOH . 
AA 5 HOH A 64 1064 36 HOH HOH . 
AA 5 HOH A 65 1065 101 HOH HOH . 
AA 5 HOH A 66 1066 23 HOH HOH . 
AA 5 HOH A 67 1067 132 HOH HOH . 
AA 5 HOH A 68 1068 55 HOH HOH . 
AA 5 HOH A 69 1069 131 HOH HOH . 
AA 5 HOH A 70 1070 107 HOH HOH . 
AA 5 HOH A 71 1071 163 HOH HOH . 
AA 5 HOH A 72 1072 31 HOH HOH . 
AA 5 HOH A 73 1073 8 HOH HOH . 
AA 5 HOH A 74 1074 70 HOH HOH . 
AA 5 HOH A 75 1075 182 HOH HOH . 
AA 5 HOH A 76 1076 121 HOH HOH . 
BA 5 HOH B 1 1001 85 HOH HOH . 
BA 5 HOH B 2 1002 1 HOH HOH . 
BA 5 HOH B 3 1003 135 HOH HOH . 
BA 5 HOH B 4 1004 190 HOH HOH . 
BA 5 HOH B 5 1005 39 HOH HOH . 
BA 5 HOH B 6 1006 93 HOH HOH . 
BA 5 HOH B 7 1007 46 HOH HOH . 
BA 5 HOH B 8 1008 80 HOH HOH . 
BA 5 HOH B 9 1009 44 HOH HOH . 
BA 5 HOH B 10 1010 66 HOH HOH . 
BA 5 HOH B 11 1011 10 HOH HOH . 
BA 5 HOH B 12 1012 142 HOH HOH . 
BA 5 HOH B 13 1013 65 HOH HOH . 
BA 5 HOH B 14 1014 6 HOH HOH . 
BA 5 HOH B 15 1015 82 HOH HOH . 
BA 5 HOH B 16 1016 117 HOH HOH . 
BA 5 HOH B 17 1017 57 HOH HOH . 
BA 5 HOH B 18 1018 69 HOH HOH . 
BA 5 HOH B 19 1019 42 HOH HOH . 
BA 5 HOH B 20 1020 99 HOH HOH . 
BA 5 HOH B 21 1021 15 HOH HOH . 
BA 5 HOH B 22 1022 109 HOH HOH . 
BA 5 HOH B 23 1023 5 HOH HOH . 
BA 5 HOH B 24 1024 124 HOH HOH . 
BA 5 HOH B 25 1025 188 HOH HOH . 
BA 5 HOH B 26 1026 51 HOH HOH . 
BA 5 HOH B 27 1027 86 HOH HOH . 
BA 5 HOH B 28 1028 189 HOH HOH . 
BA 5 HOH B 29 1029 76 HOH HOH . 
BA 5 HOH B 30 1030 63 HOH HOH . 
BA 5 HOH B 31 1031 74 HOH HOH . 
BA 5 HOH B 32 1032 112 HOH HOH . 
BA 5 HOH B 33 1033 12 HOH HOH . 
BA 5 HOH B 34 1034 119 HOH HOH . 
BA 5 HOH B 35 1035 2 HOH HOH . 
BA 5 HOH B 36 1036 49 HOH HOH . 
BA 5 HOH B 37 1037 166 HOH HOH . 
BA 5 HOH B 38 1038 58 HOH HOH . 
BA 5 HOH B 39 1039 89 HOH HOH . 
BA 5 HOH B 40 1040 183 HOH HOH . 
BA 5 HOH B 41 1041 52 HOH HOH . 
BA 5 HOH B 42 1042 40 HOH HOH . 
BA 5 HOH B 43 1043 45 HOH HOH . 
BA 5 HOH B 44 1044 139 HOH HOH . 
BA 5 HOH B 45 1045 43 HOH HOH . 
BA 5 HOH B 46 1046 50 HOH HOH . 
BA 5 HOH B 47 1047 170 HOH HOH . 
BA 5 HOH B 48 1048 47 HOH HOH . 
BA 5 HOH B 49 1049 187 HOH HOH . 
BA 5 HOH B 50 1050 160 HOH HOH . 
BA 5 HOH B 51 1051 137 HOH HOH . 
BA 5 HOH B 52 1052 38 HOH HOH . 
BA 5 HOH B 53 1053 168 HOH HOH . 
BA 5 HOH B 54 1054 154 HOH HOH . 
BA 5 HOH B 55 1055 94 HOH HOH . 
BA 5 HOH B 56 1056 95 HOH HOH . 
BA 5 HOH B 57 1057 59 HOH HOH . 
BA 5 HOH B 58 1058 41 HOH HOH . 
BA 5 HOH B 59 1059 120 HOH HOH . 
BA 5 HOH B 60 1060 60 HOH HOH . 
BA 5 HOH B 61 1061 77 HOH HOH . 
BA 5 HOH B 62 1062 87 HOH HOH . 
BA 5 HOH B 63 1063 178 HOH HOH . 
BA 5 HOH B 64 1064 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . R 4 41.316 7.491 27.3 1 57.55 ? PB ADP 916 A 1 
HETATM 2 O O1B ADP . . . R 4 42.753 7.565 26.728 1 59.12 ? O1B ADP 916 A 1 
HETATM 3 O O2B ADP . . . R 4 40.547 6.272 26.794 1 57.23 ? O2B ADP 916 A 1 
HETATM 4 O O3B ADP . . . R 4 41.504 7.441 28.829 1 57.16 ? O3B ADP 916 A 1 
HETATM 5 P PA ADP . . . R 4 39.212 9.524 26.694 1 51.98 ? PA ADP 916 A 1 
HETATM 6 O O1A ADP . . . R 4 39.001 9.763 25.249 1 49.45 ? O1A ADP 916 A 1 
HETATM 7 O O2A ADP . . . R 4 38.168 8.497 27.133 1 55.56 ? O2A ADP 916 A 1 
HETATM 8 O O3A ADP . . . R 4 40.665 8.906 26.936 1 54.25 ? O3A ADP 916 A 1 
HETATM 9 O O5' ADP . . . R 4 38.904 10.839 27.611 1 53.4 ? O5' ADP 916 A 1 
HETATM 10 C C5' ADP . . . R 4 39.169 12.203 27.217 1 55.9 ? C5' ADP 916 A 1 
HETATM 11 C C4' ADP . . . R 4 38.025 13.165 27.454 1 59.63 ? C4' ADP 916 A 1 
HETATM 12 O O4' ADP . . . R 4 38.478 14.483 27.055 1 60.36 ? O4' ADP 916 A 1 
HETATM 13 C C3' ADP . . . R 4 36.739 12.905 26.658 1 63.7 ? C3' ADP 916 A 1 
HETATM 14 O O3' ADP . . . R 4 35.719 12.183 27.347 1 64.75 ? O3' ADP 916 A 1 
HETATM 15 C C2' ADP . . . R 4 36.276 14.316 26.272 1 64.9 ? C2' ADP 916 A 1 
HETATM 16 O O2' ADP . . . R 4 35.571 14.947 27.339 1 68.07 ? O2' ADP 916 A 1 
HETATM 17 C C1' ADP . . . R 4 37.612 15.025 26.076 1 61.7 ? C1' ADP 916 A 1 
HETATM 18 N N9 ADP . . . R 4 38.212 14.894 24.739 1 60.76 ? N9 ADP 916 A 1 
HETATM 19 C C8 ADP . . . R 4 38.704 13.761 24.15 1 61.15 ? C8 ADP 916 A 1 
HETATM 20 N N7 ADP . . . R 4 39.112 13.929 22.913 1 60.76 ? N7 ADP 916 A 1 
HETATM 21 C C5 ADP . . . R 4 38.885 15.273 22.68 1 59.18 ? C5 ADP 916 A 1 
HETATM 22 C C6 ADP . . . R 4 39.128 16.097 21.554 1 56.81 ? C6 ADP 916 A 1 
HETATM 23 N N6 ADP . . . R 4 39.735 15.668 20.445 1 56.53 ? N6 ADP 916 A 1 
HETATM 24 N N1 ADP . . . R 4 38.779 17.403 21.64 1 54.61 ? N1 ADP 916 A 1 
HETATM 25 C C2 ADP . . . R 4 38.246 17.855 22.781 1 53.48 ? C2 ADP 916 A 1 
HETATM 26 N N3 ADP . . . R 4 37.988 17.183 23.909 1 55.77 ? N3 ADP 916 A 1 
HETATM 27 C C4 ADP . . . R 4 38.329 15.893 23.791 1 59.05 ? C4 ADP 916 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#