data_6I5H # _model_server_result.job_id sxJzNBbKCWZTyL5kx90dCg _model_server_result.datetime_utc '2024-11-26 09:22:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6I5H # _exptl.entry_id 6I5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.99 _cell.angle_gamma 90 _cell.entry_id 6I5H _cell.length_a 81.219 _cell.length_b 64.049 _cell.length_c 83.535 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6I5H _atom_sites.fract_transf_matrix[1][1] 0.012312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004973 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 887 EDO EDO . C 2 EDO A 1 502 1086 EDO EDO . D 3 GOL A 1 503 1386 GOL GOL . E 2 EDO A 1 504 1986 EDO EDO . F 2 EDO A 1 505 2086 EDO EDO . G 2 EDO A 1 506 2186 EDO EDO . H 4 H3N A 1 507 890 H3N 412 . I 5 HOH A 1 601 903 HOH HOH . I 5 HOH A 2 602 747 HOH HOH . I 5 HOH A 3 603 549 HOH HOH . I 5 HOH A 4 604 646 HOH HOH . I 5 HOH A 5 605 764 HOH HOH . I 5 HOH A 6 606 639 HOH HOH . I 5 HOH A 7 607 867 HOH HOH . I 5 HOH A 8 608 508 HOH HOH . I 5 HOH A 9 609 628 HOH HOH . I 5 HOH A 10 610 671 HOH HOH . I 5 HOH A 11 611 531 HOH HOH . I 5 HOH A 12 612 681 HOH HOH . I 5 HOH A 13 613 631 HOH HOH . I 5 HOH A 14 614 571 HOH HOH . I 5 HOH A 15 615 539 HOH HOH . I 5 HOH A 16 616 575 HOH HOH . I 5 HOH A 17 617 702 HOH HOH . I 5 HOH A 18 618 811 HOH HOH . I 5 HOH A 19 619 869 HOH HOH . I 5 HOH A 20 620 554 HOH HOH . I 5 HOH A 21 621 873 HOH HOH . I 5 HOH A 22 622 685 HOH HOH . I 5 HOH A 23 623 738 HOH HOH . I 5 HOH A 24 624 626 HOH HOH . I 5 HOH A 25 625 609 HOH HOH . I 5 HOH A 26 626 547 HOH HOH . I 5 HOH A 27 627 620 HOH HOH . I 5 HOH A 28 628 519 HOH HOH . I 5 HOH A 29 629 654 HOH HOH . I 5 HOH A 30 630 582 HOH HOH . I 5 HOH A 31 631 591 HOH HOH . I 5 HOH A 32 632 712 HOH HOH . I 5 HOH A 33 633 528 HOH HOH . I 5 HOH A 34 634 649 HOH HOH . I 5 HOH A 35 635 555 HOH HOH . I 5 HOH A 36 636 897 HOH HOH . I 5 HOH A 37 637 592 HOH HOH . I 5 HOH A 38 638 497 HOH HOH . I 5 HOH A 39 639 715 HOH HOH . I 5 HOH A 40 640 874 HOH HOH . I 5 HOH A 41 641 590 HOH HOH . I 5 HOH A 42 642 660 HOH HOH . I 5 HOH A 43 643 589 HOH HOH . I 5 HOH A 44 644 896 HOH HOH . I 5 HOH A 45 645 644 HOH HOH . I 5 HOH A 46 646 656 HOH HOH . I 5 HOH A 47 647 688 HOH HOH . I 5 HOH A 48 648 650 HOH HOH . I 5 HOH A 49 649 637 HOH HOH . I 5 HOH A 50 650 643 HOH HOH . I 5 HOH A 51 651 658 HOH HOH . I 5 HOH A 52 652 630 HOH HOH . I 5 HOH A 53 653 711 HOH HOH . I 5 HOH A 54 654 645 HOH HOH . I 5 HOH A 55 655 678 HOH HOH . I 5 HOH A 56 656 576 HOH HOH . I 5 HOH A 57 657 499 HOH HOH . I 5 HOH A 58 658 632 HOH HOH . I 5 HOH A 59 659 659 HOH HOH . I 5 HOH A 60 660 634 HOH HOH . I 5 HOH A 61 661 1786 HOH HOH . I 5 HOH A 62 662 595 HOH HOH . I 5 HOH A 63 663 607 HOH HOH . I 5 HOH A 64 664 696 HOH HOH . I 5 HOH A 65 665 495 HOH HOH . I 5 HOH A 66 666 525 HOH HOH . I 5 HOH A 67 667 505 HOH HOH . I 5 HOH A 68 668 522 HOH HOH . I 5 HOH A 69 669 583 HOH HOH . I 5 HOH A 70 670 666 HOH HOH . I 5 HOH A 71 671 728 HOH HOH . I 5 HOH A 72 672 857 HOH HOH . I 5 HOH A 73 673 546 HOH HOH . I 5 HOH A 74 674 735 HOH HOH . I 5 HOH A 75 675 802 HOH HOH . I 5 HOH A 76 676 548 HOH HOH . I 5 HOH A 77 677 605 HOH HOH . I 5 HOH A 78 678 633 HOH HOH . I 5 HOH A 79 679 532 HOH HOH . I 5 HOH A 80 680 551 HOH HOH . I 5 HOH A 81 681 737 HOH HOH . I 5 HOH A 82 682 599 HOH HOH . I 5 HOH A 83 683 580 HOH HOH . I 5 HOH A 84 684 521 HOH HOH . I 5 HOH A 85 685 544 HOH HOH . I 5 HOH A 86 686 748 HOH HOH . I 5 HOH A 87 687 716 HOH HOH . I 5 HOH A 88 688 625 HOH HOH . I 5 HOH A 89 689 487 HOH HOH . I 5 HOH A 90 690 662 HOH HOH . I 5 HOH A 91 691 570 HOH HOH . I 5 HOH A 92 692 670 HOH HOH . I 5 HOH A 93 693 515 HOH HOH . I 5 HOH A 94 694 559 HOH HOH . I 5 HOH A 95 695 610 HOH HOH . I 5 HOH A 96 696 694 HOH HOH . I 5 HOH A 97 697 611 HOH HOH . I 5 HOH A 98 698 668 HOH HOH . I 5 HOH A 99 699 663 HOH HOH . I 5 HOH A 100 700 789 HOH HOH . I 5 HOH A 101 701 672 HOH HOH . I 5 HOH A 102 702 901 HOH HOH . I 5 HOH A 103 703 543 HOH HOH . I 5 HOH A 104 704 739 HOH HOH . I 5 HOH A 105 705 642 HOH HOH . I 5 HOH A 106 706 578 HOH HOH . I 5 HOH A 107 707 784 HOH HOH . I 5 HOH A 108 708 709 HOH HOH . I 5 HOH A 109 709 514 HOH HOH . I 5 HOH A 110 710 616 HOH HOH . I 5 HOH A 111 711 640 HOH HOH . I 5 HOH A 112 712 504 HOH HOH . I 5 HOH A 113 713 674 HOH HOH . I 5 HOH A 114 714 577 HOH HOH . I 5 HOH A 115 715 655 HOH HOH . I 5 HOH A 116 716 494 HOH HOH . I 5 HOH A 117 717 755 HOH HOH . I 5 HOH A 118 718 498 HOH HOH . I 5 HOH A 119 719 744 HOH HOH . I 5 HOH A 120 720 573 HOH HOH . I 5 HOH A 121 721 507 HOH HOH . I 5 HOH A 122 722 512 HOH HOH . I 5 HOH A 123 723 588 HOH HOH . I 5 HOH A 124 724 506 HOH HOH . I 5 HOH A 125 725 648 HOH HOH . I 5 HOH A 126 726 567 HOH HOH . I 5 HOH A 127 727 562 HOH HOH . I 5 HOH A 128 728 541 HOH HOH . I 5 HOH A 129 729 550 HOH HOH . I 5 HOH A 130 730 566 HOH HOH . I 5 HOH A 131 731 820 HOH HOH . I 5 HOH A 132 732 749 HOH HOH . I 5 HOH A 133 733 623 HOH HOH . I 5 HOH A 134 734 673 HOH HOH . I 5 HOH A 135 735 838 HOH HOH . I 5 HOH A 136 736 542 HOH HOH . I 5 HOH A 137 737 558 HOH HOH . I 5 HOH A 138 738 798 HOH HOH . I 5 HOH A 139 739 564 HOH HOH . I 5 HOH A 140 740 516 HOH HOH . I 5 HOH A 141 741 490 HOH HOH . I 5 HOH A 142 742 524 HOH HOH . I 5 HOH A 143 743 760 HOH HOH . I 5 HOH A 144 744 776 HOH HOH . I 5 HOH A 145 745 722 HOH HOH . I 5 HOH A 146 746 627 HOH HOH . I 5 HOH A 147 747 754 HOH HOH . I 5 HOH A 148 748 569 HOH HOH . I 5 HOH A 149 749 486 HOH HOH . I 5 HOH A 150 750 574 HOH HOH . I 5 HOH A 151 751 617 HOH HOH . I 5 HOH A 152 752 647 HOH HOH . I 5 HOH A 153 753 899 HOH HOH . I 5 HOH A 154 754 679 HOH HOH . I 5 HOH A 155 755 593 HOH HOH . I 5 HOH A 156 756 496 HOH HOH . I 5 HOH A 157 757 501 HOH HOH . I 5 HOH A 158 758 518 HOH HOH . I 5 HOH A 159 759 629 HOH HOH . I 5 HOH A 160 760 652 HOH HOH . I 5 HOH A 161 761 865 HOH HOH . I 5 HOH A 162 762 557 HOH HOH . I 5 HOH A 163 763 510 HOH HOH . I 5 HOH A 164 764 502 HOH HOH . I 5 HOH A 165 765 868 HOH HOH . I 5 HOH A 166 766 526 HOH HOH . I 5 HOH A 167 767 710 HOH HOH . I 5 HOH A 168 768 527 HOH HOH . I 5 HOH A 169 769 683 HOH HOH . I 5 HOH A 170 770 803 HOH HOH . I 5 HOH A 171 771 596 HOH HOH . I 5 HOH A 172 772 615 HOH HOH . I 5 HOH A 173 773 597 HOH HOH . I 5 HOH A 174 774 563 HOH HOH . I 5 HOH A 175 775 536 HOH HOH . I 5 HOH A 176 776 687 HOH HOH . I 5 HOH A 177 777 657 HOH HOH . I 5 HOH A 178 778 653 HOH HOH . I 5 HOH A 179 779 520 HOH HOH . I 5 HOH A 180 780 604 HOH HOH . I 5 HOH A 181 781 863 HOH HOH . I 5 HOH A 182 782 680 HOH HOH . I 5 HOH A 183 783 835 HOH HOH . I 5 HOH A 184 784 572 HOH HOH . I 5 HOH A 185 785 763 HOH HOH . I 5 HOH A 186 786 601 HOH HOH . I 5 HOH A 187 787 530 HOH HOH . I 5 HOH A 188 788 689 HOH HOH . I 5 HOH A 189 789 690 HOH HOH . I 5 HOH A 190 790 793 HOH HOH . I 5 HOH A 191 791 534 HOH HOH . I 5 HOH A 192 792 638 HOH HOH . I 5 HOH A 193 793 535 HOH HOH . I 5 HOH A 194 794 545 HOH HOH . I 5 HOH A 195 795 517 HOH HOH . I 5 HOH A 196 796 500 HOH HOH . I 5 HOH A 197 797 538 HOH HOH . I 5 HOH A 198 798 836 HOH HOH . I 5 HOH A 199 799 533 HOH HOH . I 5 HOH A 200 800 581 HOH HOH . I 5 HOH A 201 801 560 HOH HOH . I 5 HOH A 202 802 718 HOH HOH . I 5 HOH A 203 803 552 HOH HOH . I 5 HOH A 204 804 606 HOH HOH . I 5 HOH A 205 805 587 HOH HOH . I 5 HOH A 206 806 509 HOH HOH . I 5 HOH A 207 807 619 HOH HOH . I 5 HOH A 208 808 740 HOH HOH . I 5 HOH A 209 809 529 HOH HOH . I 5 HOH A 210 810 602 HOH HOH . I 5 HOH A 211 811 598 HOH HOH . I 5 HOH A 212 812 860 HOH HOH . I 5 HOH A 213 813 697 HOH HOH . I 5 HOH A 214 814 523 HOH HOH . I 5 HOH A 215 815 799 HOH HOH . I 5 HOH A 216 816 810 HOH HOH . I 5 HOH A 217 817 682 HOH HOH . I 5 HOH A 218 818 813 HOH HOH . I 5 HOH A 219 819 565 HOH HOH . I 5 HOH A 220 820 556 HOH HOH . I 5 HOH A 221 821 568 HOH HOH . I 5 HOH A 222 822 585 HOH HOH . I 5 HOH A 223 823 503 HOH HOH . I 5 HOH A 224 824 635 HOH HOH . I 5 HOH A 225 825 561 HOH HOH . I 5 HOH A 226 826 594 HOH HOH . I 5 HOH A 227 827 603 HOH HOH . I 5 HOH A 228 828 729 HOH HOH . I 5 HOH A 229 829 767 HOH HOH . I 5 HOH A 230 830 621 HOH HOH . I 5 HOH A 231 831 809 HOH HOH . I 5 HOH A 232 832 664 HOH HOH . I 5 HOH A 233 833 667 HOH HOH . I 5 HOH A 234 834 806 HOH HOH . I 5 HOH A 235 835 692 HOH HOH . I 5 HOH A 236 836 701 HOH HOH . I 5 HOH A 237 837 866 HOH HOH . I 5 HOH A 238 838 618 HOH HOH . I 5 HOH A 239 839 677 HOH HOH . I 5 HOH A 240 840 691 HOH HOH . I 5 HOH A 241 841 864 HOH HOH . I 5 HOH A 242 842 801 HOH HOH . I 5 HOH A 243 843 695 HOH HOH . I 5 HOH A 244 844 823 HOH HOH . I 5 HOH A 245 845 900 HOH HOH . I 5 HOH A 246 846 636 HOH HOH . I 5 HOH A 247 847 713 HOH HOH . I 5 HOH A 248 848 746 HOH HOH . I 5 HOH A 249 849 870 HOH HOH . I 5 HOH A 250 850 669 HOH HOH . I 5 HOH A 251 851 898 HOH HOH . I 5 HOH A 252 852 600 HOH HOH . I 5 HOH A 253 853 699 HOH HOH . I 5 HOH A 254 854 791 HOH HOH . I 5 HOH A 255 855 902 HOH HOH . I 5 HOH A 256 856 612 HOH HOH . I 5 HOH A 257 857 777 HOH HOH . I 5 HOH A 258 858 804 HOH HOH . I 5 HOH A 259 859 814 HOH HOH . I 5 HOH A 260 860 537 HOH HOH . I 5 HOH A 261 861 807 HOH HOH . I 5 HOH A 262 862 661 HOH HOH . I 5 HOH A 263 863 641 HOH HOH . I 5 HOH A 264 864 757 HOH HOH . I 5 HOH A 265 865 586 HOH HOH . I 5 HOH A 266 866 818 HOH HOH . I 5 HOH A 267 867 861 HOH HOH . I 5 HOH A 268 868 553 HOH HOH . I 5 HOH A 269 869 730 HOH HOH . I 5 HOH A 270 870 817 HOH HOH . I 5 HOH A 271 871 805 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -4.051 -10.417 8.783 1 54.11 ? C1 EDO 502 A 1 HETATM 2 O O1 EDO . . . C 2 -4.552 -10.263 7.444 1 60.63 ? O1 EDO 502 A 1 HETATM 3 C C2 EDO . . . C 2 -5.219 -10.709 9.703 1 52.13 ? C2 EDO 502 A 1 HETATM 4 O O2 EDO . . . C 2 -4.864 -11.091 11.041 1 49.5 ? O2 EDO 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #