data_6I5J # _model_server_result.job_id AQ3hULJzZCkhpy4RIsGHXg _model_server_result.datetime_utc '2025-01-11 01:50:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 6I5J # _exptl.entry_id 6I5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I5J _cell.length_a 57.835 _cell.length_b 113.707 _cell.length_c 156.944 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,K,M,N,O,S 1 1 D,E,F,H,J,L,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 81 A ILE 110 1_555 A N CAS 82 A CAS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CAS 82 A CAS 111 1_555 A N VAL 83 A VAL 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C MET 103 A MET 132 1_555 A N CAS 104 A CAS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CAS 104 A CAS 133 1_555 A N LYS 105 A LYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A NE2 HIS 120 A HIS 149 1_555 K CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? covale ? covale5 B C LEU 88 B LEU 88 1_555 B N CAS 89 B CAS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C CAS 89 B CAS 89 1_555 B N ILE 90 B ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 D C MET 103 D MET 132 1_555 D N CAS 104 D CAS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C CAS 104 D CAS 133 1_555 D N LYS 105 D LYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc2 D NE2 HIS 120 D HIS 149 1_555 L CO CO . D CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? covale ? covale9 E C LEU 88 E LEU 88 1_555 E N CAS 89 E CAS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 E C CAS 89 E CAS 89 1_555 E N ILE 90 E ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 G C ASP 4 I ASP -1 1_555 G N PTR 5 I PTR 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 G C PTR 5 I PTR 0 1_555 G N THR 6 I THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 G C ILE 10 I ILE 5 1_555 G N VLM 11 I VLM 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 H C ASP 4 J ASP -1 1_555 H N PTR 5 J PTR 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 H C PTR 5 J PTR 0 1_555 H N THR 6 J THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 I C ASP 4 K ASP -1 1_555 I N PTR 5 K PTR 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 I C PTR 5 K PTR 0 1_555 I N THR 6 K THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc3 I NE2 HIS 9 K HIS 4 1_555 K CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? covale ? covale18 I C ILE 10 K ILE 5 1_555 I N VLM 11 K VLM 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 J C ASP 4 L ASP -1 1_555 J N PTR 5 L PTR 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 J C PTR 5 L PTR 0 1_555 J N THR 6 L THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc4 J NE2 HIS 9 L HIS 4 1_555 L CO CO . D CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? covale ? covale21 J C ILE 10 L ILE 5 1_555 J N VLM 11 L VLM 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc5 K CO CO . A CO 201 1_555 S O HOH . K HOH 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc6 K CO CO . A CO 201 1_555 M O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6I5J _atom_sites.fract_transf_matrix[1][1] 0.017291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 CO A 1 201 1 CO CO . L 6 CO D 1 201 2 CO CO . M 7 HOH A 1 301 56 HOH HOH . M 7 HOH A 2 302 7 HOH HOH . M 7 HOH A 3 303 3 HOH HOH . M 7 HOH A 4 304 1 HOH HOH . M 7 HOH A 5 305 11 HOH HOH . M 7 HOH A 6 306 54 HOH HOH . M 7 HOH A 7 307 12 HOH HOH . N 7 HOH B 1 201 20 HOH HOH . N 7 HOH B 2 202 24 HOH HOH . N 7 HOH B 3 203 21 HOH HOH . N 7 HOH B 4 204 19 HOH HOH . N 7 HOH B 5 205 22 HOH HOH . N 7 HOH B 6 206 23 HOH HOH . O 7 HOH C 1 201 18 HOH HOH . O 7 HOH C 2 202 4 HOH HOH . O 7 HOH C 3 203 28 HOH HOH . O 7 HOH C 4 204 27 HOH HOH . O 7 HOH C 5 205 26 HOH HOH . P 7 HOH D 1 301 44 HOH HOH . P 7 HOH D 2 302 32 HOH HOH . P 7 HOH D 3 303 34 HOH HOH . P 7 HOH D 4 304 35 HOH HOH . P 7 HOH D 5 305 36 HOH HOH . P 7 HOH D 6 306 29 HOH HOH . Q 7 HOH E 1 201 55 HOH HOH . Q 7 HOH E 2 202 38 HOH HOH . Q 7 HOH E 3 203 39 HOH HOH . Q 7 HOH E 4 204 41 HOH HOH . R 7 HOH F 1 201 42 HOH HOH . R 7 HOH F 2 202 31 HOH HOH . S 7 HOH K 1 101 10 HOH HOH . S 7 HOH K 2 102 9 HOH HOH . S 7 HOH K 3 103 57 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 6 _atom_site.Cartn_x 100.399 _atom_site.Cartn_y 8.218 _atom_site.Cartn_z -8.471 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 89.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 201 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #