data_6I5L
#
_model_server_result.job_id            EnGk7wSyPL4Zq3nyNJ083Q 
_model_server_result.datetime_utc      '2024-10-13 09:13:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6i5l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":505}' 
#
_entry.id    6I5L 
#
_exptl.entry_id    6I5L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.1 
_cell.angle_gamma         90 
_cell.entry_id            6I5L 
_cell.length_a            57.129 
_cell.length_b            117.55 
_cell.length_c            92.27 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6I5L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,Q 1 1 
B,I,J,K,R 2 1 
C,L,M,N,O,P,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 K N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6I5L 
_atom_sites.fract_transf_matrix[1][1]    0.017504 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002804 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008507 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010976 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PO4 A 1 501 1 PO4 PO4 . 
E 2 PO4 A 1 502 4 PO4 PO4 . 
F 3 H3Q A 1 503 1 H3Q XXX . 
G 4 GOL A 1 504 1 GOL GOL . 
H 4 GOL A 1 505 2 GOL GOL . 
I 2 PO4 B 1 501 3 PO4 PO4 . 
J 3 H3Q B 1 502 2 H3Q XXX . 
K 4 GOL B 1 503 3 GOL GOL . 
L 2 PO4 C 1 501 2 PO4 PO4 . 
M 3 H3Q C 1 502 3 H3Q XXX . 
N 4 GOL C 1 503 4 GOL GOL . 
O 4 GOL C 1 504 5 GOL GOL . 
P 4 GOL C 1 505 6 GOL GOL . 
Q 5 HOH A 1 601 56 HOH HOH . 
Q 5 HOH A 2 602 89 HOH HOH . 
Q 5 HOH A 3 603 41 HOH HOH . 
Q 5 HOH A 4 604 113 HOH HOH . 
Q 5 HOH A 5 605 43 HOH HOH . 
Q 5 HOH A 6 606 22 HOH HOH . 
Q 5 HOH A 7 607 115 HOH HOH . 
Q 5 HOH A 8 608 19 HOH HOH . 
Q 5 HOH A 9 609 112 HOH HOH . 
Q 5 HOH A 10 610 108 HOH HOH . 
Q 5 HOH A 11 611 109 HOH HOH . 
Q 5 HOH A 12 612 70 HOH HOH . 
Q 5 HOH A 13 613 13 HOH HOH . 
Q 5 HOH A 14 614 126 HOH HOH . 
Q 5 HOH A 15 615 74 HOH HOH . 
Q 5 HOH A 16 616 6 HOH HOH . 
Q 5 HOH A 17 617 125 HOH HOH . 
Q 5 HOH A 18 618 50 HOH HOH . 
Q 5 HOH A 19 619 93 HOH HOH . 
Q 5 HOH A 20 620 118 HOH HOH . 
Q 5 HOH A 21 621 79 HOH HOH . 
Q 5 HOH A 22 622 90 HOH HOH . 
Q 5 HOH A 23 623 119 HOH HOH . 
Q 5 HOH A 24 624 45 HOH HOH . 
Q 5 HOH A 25 625 120 HOH HOH . 
Q 5 HOH A 26 626 116 HOH HOH . 
Q 5 HOH A 27 627 65 HOH HOH . 
Q 5 HOH A 28 628 122 HOH HOH . 
Q 5 HOH A 29 629 62 HOH HOH . 
Q 5 HOH A 30 630 123 HOH HOH . 
Q 5 HOH A 31 631 33 HOH HOH . 
Q 5 HOH A 32 632 104 HOH HOH . 
Q 5 HOH A 33 633 77 HOH HOH . 
Q 5 HOH A 34 634 3 HOH HOH . 
Q 5 HOH A 35 635 114 HOH HOH . 
Q 5 HOH A 36 636 124 HOH HOH . 
Q 5 HOH A 37 637 129 HOH HOH . 
Q 5 HOH A 38 638 103 HOH HOH . 
Q 5 HOH A 39 639 161 HOH HOH . 
Q 5 HOH A 40 640 127 HOH HOH . 
Q 5 HOH A 41 641 84 HOH HOH . 
R 5 HOH B 1 601 142 HOH HOH . 
R 5 HOH B 2 602 39 HOH HOH . 
R 5 HOH B 3 603 10 HOH HOH . 
R 5 HOH B 4 604 110 HOH HOH . 
R 5 HOH B 5 605 140 HOH HOH . 
R 5 HOH B 6 606 133 HOH HOH . 
R 5 HOH B 7 607 23 HOH HOH . 
R 5 HOH B 8 608 83 HOH HOH . 
R 5 HOH B 9 609 75 HOH HOH . 
R 5 HOH B 10 610 139 HOH HOH . 
R 5 HOH B 11 611 132 HOH HOH . 
R 5 HOH B 12 612 26 HOH HOH . 
R 5 HOH B 13 613 9 HOH HOH . 
R 5 HOH B 14 614 2 HOH HOH . 
R 5 HOH B 15 615 143 HOH HOH . 
R 5 HOH B 16 616 48 HOH HOH . 
R 5 HOH B 17 617 20 HOH HOH . 
R 5 HOH B 18 618 96 HOH HOH . 
R 5 HOH B 19 619 4 HOH HOH . 
R 5 HOH B 20 620 134 HOH HOH . 
R 5 HOH B 21 621 18 HOH HOH . 
R 5 HOH B 22 622 5 HOH HOH . 
R 5 HOH B 23 623 138 HOH HOH . 
R 5 HOH B 24 624 141 HOH HOH . 
R 5 HOH B 25 625 66 HOH HOH . 
R 5 HOH B 26 626 97 HOH HOH . 
R 5 HOH B 27 627 99 HOH HOH . 
R 5 HOH B 28 628 1 HOH HOH . 
R 5 HOH B 29 629 24 HOH HOH . 
R 5 HOH B 30 630 107 HOH HOH . 
R 5 HOH B 31 631 53 HOH HOH . 
R 5 HOH B 32 632 42 HOH HOH . 
R 5 HOH B 33 633 80 HOH HOH . 
R 5 HOH B 34 634 25 HOH HOH . 
R 5 HOH B 35 635 71 HOH HOH . 
R 5 HOH B 36 636 130 HOH HOH . 
R 5 HOH B 37 637 28 HOH HOH . 
R 5 HOH B 38 638 137 HOH HOH . 
R 5 HOH B 39 639 135 HOH HOH . 
R 5 HOH B 40 640 100 HOH HOH . 
R 5 HOH B 41 641 117 HOH HOH . 
R 5 HOH B 42 642 82 HOH HOH . 
R 5 HOH B 43 643 131 HOH HOH . 
R 5 HOH B 44 644 67 HOH HOH . 
R 5 HOH B 45 645 81 HOH HOH . 
R 5 HOH B 46 646 27 HOH HOH . 
R 5 HOH B 47 647 136 HOH HOH . 
R 5 HOH B 48 648 11 HOH HOH . 
R 5 HOH B 49 649 29 HOH HOH . 
R 5 HOH B 50 650 128 HOH HOH . 
R 5 HOH B 51 651 144 HOH HOH . 
S 5 HOH C 1 601 158 HOH HOH . 
S 5 HOH C 2 602 44 HOH HOH . 
S 5 HOH C 3 603 145 HOH HOH . 
S 5 HOH C 4 604 12 HOH HOH . 
S 5 HOH C 5 605 17 HOH HOH . 
S 5 HOH C 6 606 35 HOH HOH . 
S 5 HOH C 7 607 111 HOH HOH . 
S 5 HOH C 8 608 105 HOH HOH . 
S 5 HOH C 9 609 49 HOH HOH . 
S 5 HOH C 10 610 157 HOH HOH . 
S 5 HOH C 11 611 153 HOH HOH . 
S 5 HOH C 12 612 147 HOH HOH . 
S 5 HOH C 13 613 15 HOH HOH . 
S 5 HOH C 14 614 155 HOH HOH . 
S 5 HOH C 15 615 152 HOH HOH . 
S 5 HOH C 16 616 31 HOH HOH . 
S 5 HOH C 17 617 160 HOH HOH . 
S 5 HOH C 18 618 95 HOH HOH . 
S 5 HOH C 19 619 46 HOH HOH . 
S 5 HOH C 20 620 47 HOH HOH . 
S 5 HOH C 21 621 40 HOH HOH . 
S 5 HOH C 22 622 54 HOH HOH . 
S 5 HOH C 23 623 32 HOH HOH . 
S 5 HOH C 24 624 59 HOH HOH . 
S 5 HOH C 25 625 7 HOH HOH . 
S 5 HOH C 26 626 121 HOH HOH . 
S 5 HOH C 27 627 87 HOH HOH . 
S 5 HOH C 28 628 148 HOH HOH . 
S 5 HOH C 29 629 85 HOH HOH . 
S 5 HOH C 30 630 34 HOH HOH . 
S 5 HOH C 31 631 63 HOH HOH . 
S 5 HOH C 32 632 94 HOH HOH . 
S 5 HOH C 33 633 61 HOH HOH . 
S 5 HOH C 34 634 150 HOH HOH . 
S 5 HOH C 35 635 16 HOH HOH . 
S 5 HOH C 36 636 159 HOH HOH . 
S 5 HOH C 37 637 154 HOH HOH . 
S 5 HOH C 38 638 60 HOH HOH . 
S 5 HOH C 39 639 92 HOH HOH . 
S 5 HOH C 40 640 146 HOH HOH . 
S 5 HOH C 41 641 151 HOH HOH . 
S 5 HOH C 42 642 149 HOH HOH . 
S 5 HOH C 43 643 156 HOH HOH . 
S 5 HOH C 44 644 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 16.915 2.055 44.433 1 61.73 ? C1 GOL 505 A 1 
HETATM 2 O O1 GOL . . . H 4 16.486 3.426 44.588 1 59.79 ? O1 GOL 505 A 1 
HETATM 3 C C2 GOL . . . H 4 17.977 1.866 43.325 1 62.18 ? C2 GOL 505 A 1 
HETATM 4 O O2 GOL . . . H 4 17.419 1.434 42.066 1 60.45 ? O2 GOL 505 A 1 
HETATM 5 C C3 GOL . . . H 4 18.987 0.808 43.756 1 61.4 ? C3 GOL 505 A 1 
HETATM 6 O O3 GOL . . . H 4 18.355 -0.48 43.917 1 61.66 ? O3 GOL 505 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#