data_6I5Z # _model_server_result.job_id duYBJrT3kw8mZvDFJp4egQ _model_server_result.datetime_utc '2024-10-17 13:24:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 6I5Z # _exptl.entry_id 6I5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I5Z _cell.length_a 111.148 _cell.length_b 111.148 _cell.length_c 302.38 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G 1 1 B,C,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 323 n n N HN1 SAM sing 324 n n N HN2 SAM sing 325 n n CA C SAM sing 326 n n CA CB SAM sing 327 n n CA HA SAM sing 328 n n C O SAM doub 329 n n C OXT SAM sing 330 n n CB CG SAM sing 331 n n CB HB1 SAM sing 332 n n CB HB2 SAM sing 333 n n CG SD SAM sing 334 n n CG HG1 SAM sing 335 n n CG HG2 SAM sing 336 n n SD CE SAM sing 337 n n SD C5' SAM sing 338 n n CE HE1 SAM sing 339 n n CE HE2 SAM sing 340 n n CE HE3 SAM sing 341 n n C5' C4' SAM sing 342 n n C5' "H5'1" SAM sing 343 n n C5' "H5'2" SAM sing 344 n n C4' O4' SAM sing 345 n n C4' C3' SAM sing 346 n n C4' H4' SAM sing 347 n n O4' C1' SAM sing 348 n n C3' O3' SAM sing 349 n n C3' C2' SAM sing 350 n n C3' H3' SAM sing 351 n n O3' HO3' SAM sing 352 n n C2' O2' SAM sing 353 n n C2' C1' SAM sing 354 n n C2' H2' SAM sing 355 n n O2' HO2' SAM sing 356 n n C1' N9 SAM sing 357 n n C1' H1' SAM sing 358 n n N9 C8 SAM sing 359 n y N9 C4 SAM sing 360 n y C8 N7 SAM doub 361 n y C8 H8 SAM sing 362 n n N7 C5 SAM sing 363 n y C5 C6 SAM sing 364 n y C5 C4 SAM doub 365 n y C6 N6 SAM sing 366 n n C6 N1 SAM doub 367 n y N6 HN61 SAM sing 368 n n N6 HN62 SAM sing 369 n n N1 C2 SAM sing 370 n y C2 N3 SAM doub 371 n y C2 H2 SAM sing 372 n n N3 C4 SAM sing 373 n y # _atom_sites.entry_id 6I5Z _atom_sites.fract_transf_matrix[1][1] 0.008997 _atom_sites.fract_transf_matrix[1][2] 0.005194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAH A 1 401 401 SAH SAH . F 2 SAH B 1 401 401 SAH SAH . G 3 SAM D 1 401 401 SAM SAM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . G 3 48.325 38.694 36.602 0.5 90.61 ? N SAM 401 D 1 HETATM 2 C CA SAM . . . G 3 47.56 38.484 37.863 1 88.65 ? CA SAM 401 D 1 HETATM 3 C C SAM . . . G 3 47.086 37.034 37.917 0.3 81.4 ? C SAM 401 D 1 HETATM 4 O O SAM . . . G 3 46.878 36.531 39.041 0.3 69.57 ? O SAM 401 D 1 HETATM 5 O OXT SAM . . . G 3 46.911 36.481 36.824 0.3 78.79 ? OXT SAM 401 D 1 HETATM 6 C CB SAM . . . G 3 46.326 39.387 37.934 1 91.57 ? CB SAM 401 D 1 HETATM 7 C CG SAM . . . G 3 46.53 40.804 37.439 1 93.37 ? CG SAM 401 D 1 HETATM 8 S SD SAM . . . G 3 45.304 41.9 38.211 1 90.13 ? SD SAM 401 D 1 HETATM 9 C CE SAM . . . G 3 43.876 41.806 37.136 0.3 85.76 ? CE SAM 401 D 1 HETATM 10 C C5' SAM . . . G 3 46.04 43.535 37.834 1 74.98 ? C5' SAM 401 D 1 HETATM 11 C C4' SAM . . . G 3 47.272 43.891 38.673 1 66.64 ? C4' SAM 401 D 1 HETATM 12 O O4' SAM . . . G 3 47.774 45.178 38.258 1 66.61 ? O4' SAM 401 D 1 HETATM 13 C C3' SAM . . . G 3 47.07 44.042 40.184 1 62.91 ? C3' SAM 401 D 1 HETATM 14 O O3' SAM . . . G 3 47.744 43.029 40.92 1 61.65 ? O3' SAM 401 D 1 HETATM 15 C C2' SAM . . . G 3 47.583 45.458 40.49 1 57.79 ? C2' SAM 401 D 1 HETATM 16 O O2' SAM . . . G 3 48.292 45.637 41.69 1 64.8 ? O2' SAM 401 D 1 HETATM 17 C C1' SAM . . . G 3 48.514 45.689 39.328 1 54.69 ? C1' SAM 401 D 1 HETATM 18 N N9 SAM . . . G 3 48.796 47.096 39.107 1 53.76 ? N9 SAM 401 D 1 HETATM 19 C C8 SAM . . . G 3 47.893 48.112 38.949 1 57.42 ? C8 SAM 401 D 1 HETATM 20 N N7 SAM . . . G 3 48.446 49.294 38.792 1 56.47 ? N7 SAM 401 D 1 HETATM 21 C C5 SAM . . . G 3 49.803 49.042 38.863 1 53.32 ? C5 SAM 401 D 1 HETATM 22 C C6 SAM . . . G 3 50.925 49.89 38.793 1 53.84 ? C6 SAM 401 D 1 HETATM 23 N N6 SAM . . . G 3 50.863 51.21 38.645 1 54.5 ? N6 SAM 401 D 1 HETATM 24 N N1 SAM . . . G 3 52.138 49.311 38.931 1 56.48 ? N1 SAM 401 D 1 HETATM 25 C C2 SAM . . . G 3 52.204 47.979 39.083 1 63.42 ? C2 SAM 401 D 1 HETATM 26 N N3 SAM . . . G 3 51.221 47.084 39.166 1 59.9 ? N3 SAM 401 D 1 HETATM 27 C C4 SAM . . . G 3 50.029 47.688 39.053 1 55.44 ? C4 SAM 401 D 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #