data_6I64 # _model_server_result.job_id kCtltriGG4TzjqjoppWZYg _model_server_result.datetime_utc '2024-10-12 10:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6I64 # _exptl.entry_id 6I64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I64 _cell.length_a 64.32 _cell.length_b 64.32 _cell.length_c 138.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_553 -y,-x,-z-3/2 0 -1 0 -1 0 0 0 0 -1 0 0 -207.78 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6I64 _atom_sites.fract_transf_matrix[1][1] 0.015547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H48 A 1 501 1 H48 DRG . C 3 GOL A 1 502 1 GOL GOL . D 3 GOL A 1 503 1 GOL GOL . E 3 GOL A 1 504 1 GOL GOL . F 4 HOH A 1 601 128 HOH HOH . F 4 HOH A 2 602 236 HOH HOH . F 4 HOH A 3 603 151 HOH HOH . F 4 HOH A 4 604 210 HOH HOH . F 4 HOH A 5 605 13 HOH HOH . F 4 HOH A 6 606 161 HOH HOH . F 4 HOH A 7 607 157 HOH HOH . F 4 HOH A 8 608 112 HOH HOH . F 4 HOH A 9 609 176 HOH HOH . F 4 HOH A 10 610 58 HOH HOH . F 4 HOH A 11 611 270 HOH HOH . F 4 HOH A 12 612 56 HOH HOH . F 4 HOH A 13 613 92 HOH HOH . F 4 HOH A 14 614 61 HOH HOH . F 4 HOH A 15 615 116 HOH HOH . F 4 HOH A 16 616 28 HOH HOH . F 4 HOH A 17 617 94 HOH HOH . F 4 HOH A 18 618 211 HOH HOH . F 4 HOH A 19 619 144 HOH HOH . F 4 HOH A 20 620 105 HOH HOH . F 4 HOH A 21 621 32 HOH HOH . F 4 HOH A 22 622 173 HOH HOH . F 4 HOH A 23 623 264 HOH HOH . F 4 HOH A 24 624 37 HOH HOH . F 4 HOH A 25 625 121 HOH HOH . F 4 HOH A 26 626 213 HOH HOH . F 4 HOH A 27 627 7 HOH HOH . F 4 HOH A 28 628 1 HOH HOH . F 4 HOH A 29 629 222 HOH HOH . F 4 HOH A 30 630 273 HOH HOH . F 4 HOH A 31 631 146 HOH HOH . F 4 HOH A 32 632 229 HOH HOH . F 4 HOH A 33 633 29 HOH HOH . F 4 HOH A 34 634 82 HOH HOH . F 4 HOH A 35 635 22 HOH HOH . F 4 HOH A 36 636 174 HOH HOH . F 4 HOH A 37 637 262 HOH HOH . F 4 HOH A 38 638 148 HOH HOH . F 4 HOH A 39 639 200 HOH HOH . F 4 HOH A 40 640 133 HOH HOH . F 4 HOH A 41 641 12 HOH HOH . F 4 HOH A 42 642 16 HOH HOH . F 4 HOH A 43 643 17 HOH HOH . F 4 HOH A 44 644 19 HOH HOH . F 4 HOH A 45 645 64 HOH HOH . F 4 HOH A 46 646 85 HOH HOH . F 4 HOH A 47 647 119 HOH HOH . F 4 HOH A 48 648 118 HOH HOH . F 4 HOH A 49 649 45 HOH HOH . F 4 HOH A 50 650 165 HOH HOH . F 4 HOH A 51 651 76 HOH HOH . F 4 HOH A 52 652 59 HOH HOH . F 4 HOH A 53 653 86 HOH HOH . F 4 HOH A 54 654 9 HOH HOH . F 4 HOH A 55 655 11 HOH HOH . F 4 HOH A 56 656 74 HOH HOH . F 4 HOH A 57 657 36 HOH HOH . F 4 HOH A 58 658 65 HOH HOH . F 4 HOH A 59 659 187 HOH HOH . F 4 HOH A 60 660 27 HOH HOH . F 4 HOH A 61 661 55 HOH HOH . F 4 HOH A 62 662 232 HOH HOH . F 4 HOH A 63 663 34 HOH HOH . F 4 HOH A 64 664 238 HOH HOH . F 4 HOH A 65 665 184 HOH HOH . F 4 HOH A 66 666 35 HOH HOH . F 4 HOH A 67 667 46 HOH HOH . F 4 HOH A 68 668 134 HOH HOH . F 4 HOH A 69 669 257 HOH HOH . F 4 HOH A 70 670 167 HOH HOH . F 4 HOH A 71 671 156 HOH HOH . F 4 HOH A 72 672 18 HOH HOH . F 4 HOH A 73 673 247 HOH HOH . F 4 HOH A 74 674 276 HOH HOH . F 4 HOH A 75 675 42 HOH HOH . F 4 HOH A 76 676 4 HOH HOH . F 4 HOH A 77 677 233 HOH HOH . F 4 HOH A 78 678 51 HOH HOH . F 4 HOH A 79 679 69 HOH HOH . F 4 HOH A 80 680 129 HOH HOH . F 4 HOH A 81 681 26 HOH HOH . F 4 HOH A 82 682 6 HOH HOH . F 4 HOH A 83 683 127 HOH HOH . F 4 HOH A 84 684 39 HOH HOH . F 4 HOH A 85 685 14 HOH HOH . F 4 HOH A 86 686 89 HOH HOH . F 4 HOH A 87 687 50 HOH HOH . F 4 HOH A 88 688 171 HOH HOH . F 4 HOH A 89 689 83 HOH HOH . F 4 HOH A 90 690 197 HOH HOH . F 4 HOH A 91 691 15 HOH HOH . F 4 HOH A 92 692 251 HOH HOH . F 4 HOH A 93 693 179 HOH HOH . F 4 HOH A 94 694 196 HOH HOH . F 4 HOH A 95 695 189 HOH HOH . F 4 HOH A 96 696 5 HOH HOH . F 4 HOH A 97 697 138 HOH HOH . F 4 HOH A 98 698 57 HOH HOH . F 4 HOH A 99 699 3 HOH HOH . F 4 HOH A 100 700 31 HOH HOH . F 4 HOH A 101 701 258 HOH HOH . F 4 HOH A 102 702 203 HOH HOH . F 4 HOH A 103 703 208 HOH HOH . F 4 HOH A 104 704 30 HOH HOH . F 4 HOH A 105 705 263 HOH HOH . F 4 HOH A 106 706 253 HOH HOH . F 4 HOH A 107 707 182 HOH HOH . F 4 HOH A 108 708 221 HOH HOH . F 4 HOH A 109 709 90 HOH HOH . F 4 HOH A 110 710 78 HOH HOH . F 4 HOH A 111 711 142 HOH HOH . F 4 HOH A 112 712 124 HOH HOH . F 4 HOH A 113 713 20 HOH HOH . F 4 HOH A 114 714 87 HOH HOH . F 4 HOH A 115 715 216 HOH HOH . F 4 HOH A 116 716 136 HOH HOH . F 4 HOH A 117 717 125 HOH HOH . F 4 HOH A 118 718 2 HOH HOH . F 4 HOH A 119 719 153 HOH HOH . F 4 HOH A 120 720 131 HOH HOH . F 4 HOH A 121 721 49 HOH HOH . F 4 HOH A 122 722 135 HOH HOH . F 4 HOH A 123 723 80 HOH HOH . F 4 HOH A 124 724 162 HOH HOH . F 4 HOH A 125 725 209 HOH HOH . F 4 HOH A 126 726 256 HOH HOH . F 4 HOH A 127 727 149 HOH HOH . F 4 HOH A 128 728 62 HOH HOH . F 4 HOH A 129 729 175 HOH HOH . F 4 HOH A 130 730 43 HOH HOH . F 4 HOH A 131 731 140 HOH HOH . F 4 HOH A 132 732 123 HOH HOH . F 4 HOH A 133 733 40 HOH HOH . F 4 HOH A 134 734 143 HOH HOH . F 4 HOH A 135 735 41 HOH HOH . F 4 HOH A 136 736 181 HOH HOH . F 4 HOH A 137 737 33 HOH HOH . F 4 HOH A 138 738 24 HOH HOH . F 4 HOH A 139 739 228 HOH HOH . F 4 HOH A 140 740 88 HOH HOH . F 4 HOH A 141 741 25 HOH HOH . F 4 HOH A 142 742 8 HOH HOH . F 4 HOH A 143 743 115 HOH HOH . F 4 HOH A 144 744 47 HOH HOH . F 4 HOH A 145 745 192 HOH HOH . F 4 HOH A 146 746 260 HOH HOH . F 4 HOH A 147 747 107 HOH HOH . F 4 HOH A 148 748 10 HOH HOH . F 4 HOH A 149 749 214 HOH HOH . F 4 HOH A 150 750 201 HOH HOH . F 4 HOH A 151 751 145 HOH HOH . F 4 HOH A 152 752 237 HOH HOH . F 4 HOH A 153 753 267 HOH HOH . F 4 HOH A 154 754 120 HOH HOH . F 4 HOH A 155 755 226 HOH HOH . F 4 HOH A 156 756 194 HOH HOH . F 4 HOH A 157 757 132 HOH HOH . F 4 HOH A 158 758 111 HOH HOH . F 4 HOH A 159 759 185 HOH HOH . F 4 HOH A 160 760 269 HOH HOH . F 4 HOH A 161 761 255 HOH HOH . F 4 HOH A 162 762 241 HOH HOH . F 4 HOH A 163 763 158 HOH HOH . F 4 HOH A 164 764 160 HOH HOH . F 4 HOH A 165 765 190 HOH HOH . F 4 HOH A 166 766 180 HOH HOH . F 4 HOH A 167 767 23 HOH HOH . F 4 HOH A 168 768 245 HOH HOH . F 4 HOH A 169 769 168 HOH HOH . F 4 HOH A 170 770 48 HOH HOH . F 4 HOH A 171 771 250 HOH HOH . F 4 HOH A 172 772 79 HOH HOH . F 4 HOH A 173 773 248 HOH HOH . F 4 HOH A 174 774 166 HOH HOH . F 4 HOH A 175 775 183 HOH HOH . F 4 HOH A 176 776 195 HOH HOH . F 4 HOH A 177 777 244 HOH HOH . F 4 HOH A 178 778 246 HOH HOH . F 4 HOH A 179 779 139 HOH HOH . F 4 HOH A 180 780 122 HOH HOH . F 4 HOH A 181 781 172 HOH HOH . F 4 HOH A 182 782 219 HOH HOH . F 4 HOH A 183 783 202 HOH HOH . F 4 HOH A 184 784 109 HOH HOH . F 4 HOH A 185 785 63 HOH HOH . F 4 HOH A 186 786 178 HOH HOH . F 4 HOH A 187 787 240 HOH HOH . F 4 HOH A 188 788 177 HOH HOH . F 4 HOH A 189 789 68 HOH HOH . F 4 HOH A 190 790 188 HOH HOH . F 4 HOH A 191 791 186 HOH HOH . F 4 HOH A 192 792 261 HOH HOH . F 4 HOH A 193 793 217 HOH HOH . F 4 HOH A 194 794 154 HOH HOH . F 4 HOH A 195 795 103 HOH HOH . F 4 HOH A 196 796 114 HOH HOH . F 4 HOH A 197 797 101 HOH HOH . F 4 HOH A 198 798 96 HOH HOH . F 4 HOH A 199 799 223 HOH HOH . F 4 HOH A 200 800 252 HOH HOH . F 4 HOH A 201 801 70 HOH HOH . F 4 HOH A 202 802 130 HOH HOH . F 4 HOH A 203 803 108 HOH HOH . F 4 HOH A 204 804 231 HOH HOH . F 4 HOH A 205 805 191 HOH HOH . F 4 HOH A 206 806 243 HOH HOH . F 4 HOH A 207 807 117 HOH HOH . F 4 HOH A 208 808 163 HOH HOH . F 4 HOH A 209 809 155 HOH HOH . F 4 HOH A 210 810 271 HOH HOH . F 4 HOH A 211 811 272 HOH HOH . F 4 HOH A 212 812 218 HOH HOH . F 4 HOH A 213 813 169 HOH HOH . F 4 HOH A 214 814 100 HOH HOH . F 4 HOH A 215 815 66 HOH HOH . F 4 HOH A 216 816 60 HOH HOH . F 4 HOH A 217 817 224 HOH HOH . F 4 HOH A 218 818 147 HOH HOH . F 4 HOH A 219 819 52 HOH HOH . F 4 HOH A 220 820 275 HOH HOH . F 4 HOH A 221 821 207 HOH HOH . F 4 HOH A 222 822 235 HOH HOH . F 4 HOH A 223 823 53 HOH HOH . F 4 HOH A 224 824 220 HOH HOH . F 4 HOH A 225 825 212 HOH HOH . F 4 HOH A 226 826 277 HOH HOH . F 4 HOH A 227 827 227 HOH HOH . F 4 HOH A 228 828 225 HOH HOH . F 4 HOH A 229 829 204 HOH HOH . F 4 HOH A 230 830 205 HOH HOH . F 4 HOH A 231 831 137 HOH HOH . F 4 HOH A 232 832 98 HOH HOH . F 4 HOH A 233 833 198 HOH HOH . F 4 HOH A 234 834 215 HOH HOH . F 4 HOH A 235 835 102 HOH HOH . F 4 HOH A 236 836 99 HOH HOH . F 4 HOH A 237 837 126 HOH HOH . F 4 HOH A 238 838 268 HOH HOH . F 4 HOH A 239 839 97 HOH HOH . F 4 HOH A 240 840 159 HOH HOH . F 4 HOH A 241 841 150 HOH HOH . F 4 HOH A 242 842 113 HOH HOH . F 4 HOH A 243 843 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 54.15 -40.579 -88.56 1 47.43 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 3 54.144 -41.215 -89.812 1 58.06 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 3 55.281 -39.533 -88.641 1 46.66 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 3 55.191 -38.814 -89.824 1 46.94 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 3 55.15 -38.658 -87.332 1 52.02 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 3 56.373 -37.995 -87.111 1 49.24 ? O3 GOL 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #