data_6I6F # _model_server_result.job_id rjeLBCY0sg2Aw_6iZpnfTg _model_server_result.datetime_utc '2024-11-13 13:48:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 6I6F # _exptl.entry_id 6I6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I6F _cell.length_a 59.154 _cell.length_b 77.194 _cell.length_c 114.854 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6I6F _atom_sites.fract_transf_matrix[1][1] 0.016905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 301 NAP NAP . D 3 H4E A 1 302 1 H4E INX . E 4 EDO A 1 303 2 EDO EDO . F 4 EDO A 1 304 3 EDO EDO . G 4 EDO A 1 305 4 EDO EDO . H 4 EDO A 1 306 7 EDO EDO . I 4 EDO A 1 307 10 EDO EDO . J 4 EDO A 1 308 14 EDO EDO . K 4 EDO A 1 309 15 EDO EDO . L 4 EDO A 1 310 16 EDO EDO . M 4 EDO A 1 311 18 EDO EDO . N 2 NAP B 1 301 301 NAP NAP . O 4 EDO B 1 302 1 EDO EDO . P 4 EDO B 1 303 9 EDO EDO . Q 4 EDO B 1 304 17 EDO EDO . R 4 EDO B 1 305 19 EDO EDO . S 5 HOH A 1 401 23 HOH HOH . S 5 HOH A 2 402 185 HOH HOH . S 5 HOH A 3 403 202 HOH HOH . S 5 HOH A 4 404 176 HOH HOH . S 5 HOH A 5 405 175 HOH HOH . S 5 HOH A 6 406 111 HOH HOH . S 5 HOH A 7 407 41 HOH HOH . S 5 HOH A 8 408 169 HOH HOH . S 5 HOH A 9 409 4 HOH HOH . S 5 HOH A 10 410 100 HOH HOH . S 5 HOH A 11 411 34 HOH HOH . S 5 HOH A 12 412 6 HOH HOH . S 5 HOH A 13 413 64 HOH HOH . S 5 HOH A 14 414 164 HOH HOH . S 5 HOH A 15 415 19 HOH HOH . S 5 HOH A 16 416 196 HOH HOH . S 5 HOH A 17 417 110 HOH HOH . S 5 HOH A 18 418 67 HOH HOH . S 5 HOH A 19 419 178 HOH HOH . S 5 HOH A 20 420 14 HOH HOH . S 5 HOH A 21 421 115 HOH HOH . S 5 HOH A 22 422 17 HOH HOH . S 5 HOH A 23 423 40 HOH HOH . S 5 HOH A 24 424 55 HOH HOH . S 5 HOH A 25 425 142 HOH HOH . S 5 HOH A 26 426 146 HOH HOH . S 5 HOH A 27 427 208 HOH HOH . S 5 HOH A 28 428 26 HOH HOH . S 5 HOH A 29 429 45 HOH HOH . S 5 HOH A 30 430 166 HOH HOH . S 5 HOH A 31 431 38 HOH HOH . S 5 HOH A 32 432 129 HOH HOH . S 5 HOH A 33 433 60 HOH HOH . S 5 HOH A 34 434 32 HOH HOH . S 5 HOH A 35 435 160 HOH HOH . S 5 HOH A 36 436 170 HOH HOH . S 5 HOH A 37 437 43 HOH HOH . S 5 HOH A 38 438 140 HOH HOH . S 5 HOH A 39 439 1 HOH HOH . S 5 HOH A 40 440 149 HOH HOH . S 5 HOH A 41 441 138 HOH HOH . S 5 HOH A 42 442 89 HOH HOH . S 5 HOH A 43 443 77 HOH HOH . S 5 HOH A 44 444 57 HOH HOH . S 5 HOH A 45 445 8 HOH HOH . S 5 HOH A 46 446 81 HOH HOH . S 5 HOH A 47 447 126 HOH HOH . S 5 HOH A 48 448 92 HOH HOH . S 5 HOH A 49 449 94 HOH HOH . S 5 HOH A 50 450 117 HOH HOH . S 5 HOH A 51 451 59 HOH HOH . S 5 HOH A 52 452 86 HOH HOH . S 5 HOH A 53 453 134 HOH HOH . S 5 HOH A 54 454 174 HOH HOH . S 5 HOH A 55 455 103 HOH HOH . S 5 HOH A 56 456 90 HOH HOH . S 5 HOH A 57 457 194 HOH HOH . S 5 HOH A 58 458 70 HOH HOH . S 5 HOH A 59 459 181 HOH HOH . S 5 HOH A 60 460 91 HOH HOH . S 5 HOH A 61 461 127 HOH HOH . S 5 HOH A 62 462 99 HOH HOH . S 5 HOH A 63 463 145 HOH HOH . S 5 HOH A 64 464 76 HOH HOH . S 5 HOH A 65 465 116 HOH HOH . S 5 HOH A 66 466 73 HOH HOH . S 5 HOH A 67 467 177 HOH HOH . S 5 HOH A 68 468 29 HOH HOH . S 5 HOH A 69 469 21 HOH HOH . S 5 HOH A 70 470 143 HOH HOH . S 5 HOH A 71 471 102 HOH HOH . S 5 HOH A 72 472 42 HOH HOH . S 5 HOH A 73 473 198 HOH HOH . S 5 HOH A 74 474 171 HOH HOH . S 5 HOH A 75 475 128 HOH HOH . S 5 HOH A 76 476 51 HOH HOH . S 5 HOH A 77 477 37 HOH HOH . S 5 HOH A 78 478 78 HOH HOH . S 5 HOH A 79 479 150 HOH HOH . S 5 HOH A 80 480 74 HOH HOH . S 5 HOH A 81 481 88 HOH HOH . S 5 HOH A 82 482 65 HOH HOH . S 5 HOH A 83 483 157 HOH HOH . S 5 HOH A 84 484 205 HOH HOH . S 5 HOH A 85 485 28 HOH HOH . S 5 HOH A 86 486 13 HOH HOH . S 5 HOH A 87 487 201 HOH HOH . S 5 HOH A 88 488 118 HOH HOH . S 5 HOH A 89 489 155 HOH HOH . S 5 HOH A 90 490 68 HOH HOH . S 5 HOH A 91 491 39 HOH HOH . S 5 HOH A 92 492 187 HOH HOH . S 5 HOH A 93 493 66 HOH HOH . S 5 HOH A 94 494 12 HOH HOH . S 5 HOH A 95 495 72 HOH HOH . S 5 HOH A 96 496 54 HOH HOH . S 5 HOH A 97 497 125 HOH HOH . S 5 HOH A 98 498 109 HOH HOH . S 5 HOH A 99 499 82 HOH HOH . S 5 HOH A 100 500 195 HOH HOH . S 5 HOH A 101 501 75 HOH HOH . S 5 HOH A 102 502 2 HOH HOH . S 5 HOH A 103 503 207 HOH HOH . S 5 HOH A 104 504 206 HOH HOH . S 5 HOH A 105 505 112 HOH HOH . S 5 HOH A 106 506 95 HOH HOH . S 5 HOH A 107 507 131 HOH HOH . S 5 HOH A 108 508 101 HOH HOH . S 5 HOH A 109 509 179 HOH HOH . S 5 HOH A 110 510 156 HOH HOH . S 5 HOH A 111 511 152 HOH HOH . S 5 HOH A 112 512 159 HOH HOH . S 5 HOH A 113 513 108 HOH HOH . S 5 HOH A 114 514 180 HOH HOH . S 5 HOH A 115 515 98 HOH HOH . S 5 HOH A 116 516 147 HOH HOH . S 5 HOH A 117 517 203 HOH HOH . S 5 HOH A 118 518 167 HOH HOH . S 5 HOH A 119 519 161 HOH HOH . S 5 HOH A 120 520 197 HOH HOH . S 5 HOH A 121 521 204 HOH HOH . S 5 HOH A 122 522 153 HOH HOH . T 5 HOH B 1 401 9 HOH HOH . T 5 HOH B 2 402 87 HOH HOH . T 5 HOH B 3 403 83 HOH HOH . T 5 HOH B 4 404 5 HOH HOH . T 5 HOH B 5 405 210 HOH HOH . T 5 HOH B 6 406 104 HOH HOH . T 5 HOH B 7 407 114 HOH HOH . T 5 HOH B 8 408 209 HOH HOH . T 5 HOH B 9 409 119 HOH HOH . T 5 HOH B 10 410 106 HOH HOH . T 5 HOH B 11 411 184 HOH HOH . T 5 HOH B 12 412 124 HOH HOH . T 5 HOH B 13 413 165 HOH HOH . T 5 HOH B 14 414 188 HOH HOH . T 5 HOH B 15 415 200 HOH HOH . T 5 HOH B 16 416 107 HOH HOH . T 5 HOH B 17 417 3 HOH HOH . T 5 HOH B 18 418 58 HOH HOH . T 5 HOH B 19 419 141 HOH HOH . T 5 HOH B 20 420 132 HOH HOH . T 5 HOH B 21 421 10 HOH HOH . T 5 HOH B 22 422 16 HOH HOH . T 5 HOH B 23 423 122 HOH HOH . T 5 HOH B 24 424 135 HOH HOH . T 5 HOH B 25 425 15 HOH HOH . T 5 HOH B 26 426 192 HOH HOH . T 5 HOH B 27 427 44 HOH HOH . T 5 HOH B 28 428 191 HOH HOH . T 5 HOH B 29 429 48 HOH HOH . T 5 HOH B 30 430 31 HOH HOH . T 5 HOH B 31 431 84 HOH HOH . T 5 HOH B 32 432 33 HOH HOH . T 5 HOH B 33 433 79 HOH HOH . T 5 HOH B 34 434 186 HOH HOH . T 5 HOH B 35 435 50 HOH HOH . T 5 HOH B 36 436 144 HOH HOH . T 5 HOH B 37 437 121 HOH HOH . T 5 HOH B 38 438 18 HOH HOH . T 5 HOH B 39 439 139 HOH HOH . T 5 HOH B 40 440 168 HOH HOH . T 5 HOH B 41 441 11 HOH HOH . T 5 HOH B 42 442 7 HOH HOH . T 5 HOH B 43 443 130 HOH HOH . T 5 HOH B 44 444 173 HOH HOH . T 5 HOH B 45 445 137 HOH HOH . T 5 HOH B 46 446 25 HOH HOH . T 5 HOH B 47 447 71 HOH HOH . T 5 HOH B 48 448 183 HOH HOH . T 5 HOH B 49 449 172 HOH HOH . T 5 HOH B 50 450 80 HOH HOH . T 5 HOH B 51 451 133 HOH HOH . T 5 HOH B 52 452 22 HOH HOH . T 5 HOH B 53 453 62 HOH HOH . T 5 HOH B 54 454 24 HOH HOH . T 5 HOH B 55 455 36 HOH HOH . T 5 HOH B 56 456 193 HOH HOH . T 5 HOH B 57 457 123 HOH HOH . T 5 HOH B 58 458 85 HOH HOH . T 5 HOH B 59 459 154 HOH HOH . T 5 HOH B 60 460 30 HOH HOH . T 5 HOH B 61 461 56 HOH HOH . T 5 HOH B 62 462 63 HOH HOH . T 5 HOH B 63 463 27 HOH HOH . T 5 HOH B 64 464 47 HOH HOH . T 5 HOH B 65 465 163 HOH HOH . T 5 HOH B 66 466 61 HOH HOH . T 5 HOH B 67 467 69 HOH HOH . T 5 HOH B 68 468 199 HOH HOH . T 5 HOH B 69 469 46 HOH HOH . T 5 HOH B 70 470 20 HOH HOH . T 5 HOH B 71 471 182 HOH HOH . T 5 HOH B 72 472 136 HOH HOH . T 5 HOH B 73 473 189 HOH HOH . T 5 HOH B 74 474 52 HOH HOH . T 5 HOH B 75 475 93 HOH HOH . T 5 HOH B 76 476 49 HOH HOH . T 5 HOH B 77 477 105 HOH HOH . T 5 HOH B 78 478 35 HOH HOH . T 5 HOH B 79 479 151 HOH HOH . T 5 HOH B 80 480 120 HOH HOH . T 5 HOH B 81 481 190 HOH HOH . T 5 HOH B 82 482 162 HOH HOH . T 5 HOH B 83 483 53 HOH HOH . T 5 HOH B 84 484 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 -4.892 5.536 18.671 1 52.3 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . H 4 -5.44 6.761 18.172 1 39.42 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . H 4 -4.02 5.815 19.903 1 52.6 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . H 4 -2.614 5.599 19.695 1 47.49 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #