data_6I6S # _model_server_result.job_id 1AaAUZTy5SWVW5bOYCX3Qg _model_server_result.datetime_utc '2024-10-20 12:47:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i6s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6I6S # _exptl.entry_id 6I6S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I6S _cell.length_a 48.73 _cell.length_b 52.9 _cell.length_c 133.06 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I6S _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2 B,D,F 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -48.73 0 66.53 3 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 13 A ARG 12 1_555 C K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc2 A O ARG 15 A ARG 14 1_555 C K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc3 A O VAL 18 A VAL 17 1_555 C K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 C K K . A K 201 1_555 E O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 C K K . A K 201 1_555 E O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc6 C K K . A K 201 1_555 E O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc7 B O ARG 13 B ARG 12 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc8 B O ARG 15 B ARG 14 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc9 B O VAL 18 B VAL 17 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc10 D NA NA . B NA 201 1_555 F O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 D NA NA . B NA 201 1_555 F O HOH . B HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc12 D NA NA . B NA 201 1_555 F O HOH . B HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6I6S _atom_sites.fract_transf_matrix[1][1] 0.020521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 201 1 K K . D 3 NA B 1 201 1 NA NA . E 4 HOH A 1 301 79 HOH HOH . E 4 HOH A 2 302 26 HOH HOH . E 4 HOH A 3 303 62 HOH HOH . E 4 HOH A 4 304 97 HOH HOH . E 4 HOH A 5 305 80 HOH HOH . E 4 HOH A 6 306 38 HOH HOH . E 4 HOH A 7 307 19 HOH HOH . E 4 HOH A 8 308 30 HOH HOH . E 4 HOH A 9 309 95 HOH HOH . E 4 HOH A 10 310 33 HOH HOH . E 4 HOH A 11 311 6 HOH HOH . E 4 HOH A 12 312 66 HOH HOH . E 4 HOH A 13 313 17 HOH HOH . E 4 HOH A 14 314 56 HOH HOH . E 4 HOH A 15 315 65 HOH HOH . E 4 HOH A 16 316 20 HOH HOH . E 4 HOH A 17 317 63 HOH HOH . E 4 HOH A 18 318 39 HOH HOH . E 4 HOH A 19 319 34 HOH HOH . E 4 HOH A 20 320 78 HOH HOH . E 4 HOH A 21 321 27 HOH HOH . E 4 HOH A 22 322 52 HOH HOH . E 4 HOH A 23 323 60 HOH HOH . E 4 HOH A 24 324 87 HOH HOH . E 4 HOH A 25 325 47 HOH HOH . E 4 HOH A 26 326 64 HOH HOH . E 4 HOH A 27 327 10 HOH HOH . E 4 HOH A 28 328 90 HOH HOH . E 4 HOH A 29 329 16 HOH HOH . E 4 HOH A 30 330 32 HOH HOH . E 4 HOH A 31 331 102 HOH HOH . E 4 HOH A 32 332 15 HOH HOH . E 4 HOH A 33 333 57 HOH HOH . E 4 HOH A 34 334 8 HOH HOH . E 4 HOH A 35 335 68 HOH HOH . E 4 HOH A 36 336 28 HOH HOH . E 4 HOH A 37 337 82 HOH HOH . E 4 HOH A 38 338 83 HOH HOH . E 4 HOH A 39 339 42 HOH HOH . E 4 HOH A 40 340 49 HOH HOH . E 4 HOH A 41 341 24 HOH HOH . E 4 HOH A 42 342 4 HOH HOH . E 4 HOH A 43 343 22 HOH HOH . E 4 HOH A 44 344 36 HOH HOH . E 4 HOH A 45 345 43 HOH HOH . E 4 HOH A 46 346 54 HOH HOH . E 4 HOH A 47 347 14 HOH HOH . E 4 HOH A 48 348 51 HOH HOH . E 4 HOH A 49 349 61 HOH HOH . E 4 HOH A 50 350 101 HOH HOH . E 4 HOH A 51 351 71 HOH HOH . E 4 HOH A 52 352 81 HOH HOH . E 4 HOH A 53 353 106 HOH HOH . E 4 HOH A 54 354 85 HOH HOH . E 4 HOH A 55 355 93 HOH HOH . E 4 HOH A 56 356 89 HOH HOH . E 4 HOH A 57 357 45 HOH HOH . E 4 HOH A 58 358 103 HOH HOH . F 4 HOH B 1 301 99 HOH HOH . F 4 HOH B 2 302 48 HOH HOH . F 4 HOH B 3 303 98 HOH HOH . F 4 HOH B 4 304 46 HOH HOH . F 4 HOH B 5 305 75 HOH HOH . F 4 HOH B 6 306 69 HOH HOH . F 4 HOH B 7 307 104 HOH HOH . F 4 HOH B 8 308 86 HOH HOH . F 4 HOH B 9 309 84 HOH HOH . F 4 HOH B 10 310 31 HOH HOH . F 4 HOH B 11 311 41 HOH HOH . F 4 HOH B 12 312 67 HOH HOH . F 4 HOH B 13 313 12 HOH HOH . F 4 HOH B 14 314 55 HOH HOH . F 4 HOH B 15 315 18 HOH HOH . F 4 HOH B 16 316 11 HOH HOH . F 4 HOH B 17 317 25 HOH HOH . F 4 HOH B 18 318 3 HOH HOH . F 4 HOH B 19 319 70 HOH HOH . F 4 HOH B 20 320 9 HOH HOH . F 4 HOH B 21 321 40 HOH HOH . F 4 HOH B 22 322 5 HOH HOH . F 4 HOH B 23 323 50 HOH HOH . F 4 HOH B 24 324 88 HOH HOH . F 4 HOH B 25 325 94 HOH HOH . F 4 HOH B 26 326 59 HOH HOH . F 4 HOH B 27 327 100 HOH HOH . F 4 HOH B 28 328 21 HOH HOH . F 4 HOH B 29 329 91 HOH HOH . F 4 HOH B 30 330 58 HOH HOH . F 4 HOH B 31 331 37 HOH HOH . F 4 HOH B 32 332 7 HOH HOH . F 4 HOH B 33 333 105 HOH HOH . F 4 HOH B 34 334 13 HOH HOH . F 4 HOH B 35 335 74 HOH HOH . F 4 HOH B 36 336 53 HOH HOH . F 4 HOH B 37 337 44 HOH HOH . F 4 HOH B 38 338 35 HOH HOH . F 4 HOH B 39 339 76 HOH HOH . F 4 HOH B 40 340 92 HOH HOH . F 4 HOH B 41 341 29 HOH HOH . F 4 HOH B 42 342 96 HOH HOH . F 4 HOH B 43 343 23 HOH HOH . F 4 HOH B 44 344 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.566 _atom_site.Cartn_y 10.736 _atom_site.Cartn_z 11.452 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #