data_6I77 # _model_server_result.job_id '_fvXwTOX2ul8Q5DQnp-dRw' _model_server_result.datetime_utc '2024-11-04 22:56:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6I77 # _exptl.entry_id 6I77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.467 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-[4-azanyl-2,3,5,6-tetrakis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I77 _cell.length_a 35.888 _cell.length_b 57.409 _cell.length_c 62.836 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 F4 N4 O4 S' _chem_comp.formula_weight 500.467 _chem_comp.id H5Q _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-[4-azanyl-2,3,5,6-tetrakis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 H5Q sing 129 n n C02 C03 H5Q doub 130 n y C02 C34 H5Q sing 131 n y C03 C04 H5Q sing 132 n y C34 C33 H5Q doub 133 n y C04 C05 H5Q doub 134 n y C33 C05 H5Q sing 135 n y C05 S06 H5Q sing 136 n n N30 N29 H5Q doub 137 n y N30 N15 H5Q sing 138 n y O32 C31 H5Q sing 139 n n N29 C17 H5Q sing 140 n y F28 C27 H5Q sing 141 n n C07 S06 H5Q sing 142 n n C07 C31 H5Q sing 143 n n C07 O08 H5Q sing 144 n n C14 N15 H5Q sing 145 n n C14 C31 H5Q sing 146 n n C14 C12 H5Q sing 147 n n N15 C16 H5Q sing 148 n y C17 C16 H5Q doub 149 n y C17 C18 H5Q sing 150 n n F26 C25 H5Q sing 151 n n C27 C18 H5Q doub 152 n y C27 C25 H5Q sing 153 n y C09 O08 H5Q sing 154 n n C09 C12 H5Q sing 155 n n C09 C10 H5Q sing 156 n n C12 O13 H5Q sing 157 n n C18 C19 H5Q sing 158 n y C25 C23 H5Q doub 159 n y O11 C10 H5Q sing 160 n n C19 F20 H5Q sing 161 n n C19 C21 H5Q doub 162 n y C23 N24 H5Q sing 163 n n C23 C21 H5Q sing 164 n y C21 F22 H5Q sing 165 n n C10 H102 H5Q sing 166 n n C10 H101 H5Q sing 167 n n C01 H012 H5Q sing 168 n n C01 H013 H5Q sing 169 n n C01 H011 H5Q sing 170 n n C03 H031 H5Q sing 171 n n C04 H041 H5Q sing 172 n n C07 H071 H5Q sing 173 n n C09 H091 H5Q sing 174 n n C12 H121 H5Q sing 175 n n C14 H141 H5Q sing 176 n n C16 H161 H5Q sing 177 n n C31 H311 H5Q sing 178 n n C33 H331 H5Q sing 179 n n C34 H341 H5Q sing 180 n n N24 H241 H5Q sing 181 n n N24 H242 H5Q sing 182 n n O11 H111 H5Q sing 183 n n O13 H131 H5Q sing 184 n n O32 H321 H5Q sing 185 n n # _atom_sites.entry_id 6I77 _atom_sites.fract_transf_matrix[1][1] 0.027864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H5Q A 1 301 1 H5Q LIG . C 3 HOH A 1 401 205 HOH HOH . C 3 HOH A 2 402 200 HOH HOH . C 3 HOH A 3 403 115 HOH HOH . C 3 HOH A 4 404 23 HOH HOH . C 3 HOH A 5 405 74 HOH HOH . C 3 HOH A 6 406 32 HOH HOH . C 3 HOH A 7 407 31 HOH HOH . C 3 HOH A 8 408 204 HOH HOH . C 3 HOH A 9 409 43 HOH HOH . C 3 HOH A 10 410 73 HOH HOH . C 3 HOH A 11 411 5 HOH HOH . C 3 HOH A 12 412 26 HOH HOH . C 3 HOH A 13 413 208 HOH HOH . C 3 HOH A 14 414 58 HOH HOH . C 3 HOH A 15 415 207 HOH HOH . C 3 HOH A 16 416 96 HOH HOH . C 3 HOH A 17 417 10 HOH HOH . C 3 HOH A 18 418 60 HOH HOH . C 3 HOH A 19 419 25 HOH HOH . C 3 HOH A 20 420 7 HOH HOH . C 3 HOH A 21 421 29 HOH HOH . C 3 HOH A 22 422 8 HOH HOH . C 3 HOH A 23 423 131 HOH HOH . C 3 HOH A 24 424 54 HOH HOH . C 3 HOH A 25 425 78 HOH HOH . C 3 HOH A 26 426 38 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 82 HOH HOH . C 3 HOH A 30 430 20 HOH HOH . C 3 HOH A 31 431 144 HOH HOH . C 3 HOH A 32 432 9 HOH HOH . C 3 HOH A 33 433 65 HOH HOH . C 3 HOH A 34 434 37 HOH HOH . C 3 HOH A 35 435 66 HOH HOH . C 3 HOH A 36 436 169 HOH HOH . C 3 HOH A 37 437 133 HOH HOH . C 3 HOH A 38 438 185 HOH HOH . C 3 HOH A 39 439 108 HOH HOH . C 3 HOH A 40 440 89 HOH HOH . C 3 HOH A 41 441 71 HOH HOH . C 3 HOH A 42 442 94 HOH HOH . C 3 HOH A 43 443 56 HOH HOH . C 3 HOH A 44 444 13 HOH HOH . C 3 HOH A 45 445 55 HOH HOH . C 3 HOH A 46 446 95 HOH HOH . C 3 HOH A 47 447 15 HOH HOH . C 3 HOH A 48 448 2 HOH HOH . C 3 HOH A 49 449 6 HOH HOH . C 3 HOH A 50 450 12 HOH HOH . C 3 HOH A 51 451 49 HOH HOH . C 3 HOH A 52 452 158 HOH HOH . C 3 HOH A 53 453 1 HOH HOH . C 3 HOH A 54 454 36 HOH HOH . C 3 HOH A 55 455 88 HOH HOH . C 3 HOH A 56 456 64 HOH HOH . C 3 HOH A 57 457 113 HOH HOH . C 3 HOH A 58 458 175 HOH HOH . C 3 HOH A 59 459 33 HOH HOH . C 3 HOH A 60 460 76 HOH HOH . C 3 HOH A 61 461 206 HOH HOH . C 3 HOH A 62 462 39 HOH HOH . C 3 HOH A 63 463 40 HOH HOH . C 3 HOH A 64 464 62 HOH HOH . C 3 HOH A 65 465 44 HOH HOH . C 3 HOH A 66 466 72 HOH HOH . C 3 HOH A 67 467 21 HOH HOH . C 3 HOH A 68 468 4 HOH HOH . C 3 HOH A 69 469 34 HOH HOH . C 3 HOH A 70 470 90 HOH HOH . C 3 HOH A 71 471 150 HOH HOH . C 3 HOH A 72 472 14 HOH HOH . C 3 HOH A 73 473 51 HOH HOH . C 3 HOH A 74 474 53 HOH HOH . C 3 HOH A 75 475 81 HOH HOH . C 3 HOH A 76 476 143 HOH HOH . C 3 HOH A 77 477 87 HOH HOH . C 3 HOH A 78 478 52 HOH HOH . C 3 HOH A 79 479 215 HOH HOH . C 3 HOH A 80 480 47 HOH HOH . C 3 HOH A 81 481 61 HOH HOH . C 3 HOH A 82 482 102 HOH HOH . C 3 HOH A 83 483 30 HOH HOH . C 3 HOH A 84 484 192 HOH HOH . C 3 HOH A 85 485 213 HOH HOH . C 3 HOH A 86 486 216 HOH HOH . C 3 HOH A 87 487 16 HOH HOH . C 3 HOH A 88 488 151 HOH HOH . C 3 HOH A 89 489 41 HOH HOH . C 3 HOH A 90 490 45 HOH HOH . C 3 HOH A 91 491 126 HOH HOH . C 3 HOH A 92 492 69 HOH HOH . C 3 HOH A 93 493 35 HOH HOH . C 3 HOH A 94 494 46 HOH HOH . C 3 HOH A 95 495 70 HOH HOH . C 3 HOH A 96 496 109 HOH HOH . C 3 HOH A 97 497 210 HOH HOH . C 3 HOH A 98 498 22 HOH HOH . C 3 HOH A 99 499 142 HOH HOH . C 3 HOH A 100 500 42 HOH HOH . C 3 HOH A 101 501 19 HOH HOH . C 3 HOH A 102 502 63 HOH HOH . C 3 HOH A 103 503 17 HOH HOH . C 3 HOH A 104 504 59 HOH HOH . C 3 HOH A 105 505 107 HOH HOH . C 3 HOH A 106 506 48 HOH HOH . C 3 HOH A 107 507 137 HOH HOH . C 3 HOH A 108 508 184 HOH HOH . C 3 HOH A 109 509 182 HOH HOH . C 3 HOH A 110 510 159 HOH HOH . C 3 HOH A 111 511 180 HOH HOH . C 3 HOH A 112 512 11 HOH HOH . C 3 HOH A 113 513 75 HOH HOH . C 3 HOH A 114 514 152 HOH HOH . C 3 HOH A 115 515 3 HOH HOH . C 3 HOH A 116 516 84 HOH HOH . C 3 HOH A 117 517 193 HOH HOH . C 3 HOH A 118 518 77 HOH HOH . C 3 HOH A 119 519 217 HOH HOH . C 3 HOH A 120 520 68 HOH HOH . C 3 HOH A 121 521 148 HOH HOH . C 3 HOH A 122 522 187 HOH HOH . C 3 HOH A 123 523 67 HOH HOH . C 3 HOH A 124 524 50 HOH HOH . C 3 HOH A 125 525 211 HOH HOH . C 3 HOH A 126 526 117 HOH HOH . C 3 HOH A 127 527 119 HOH HOH . C 3 HOH A 128 528 212 HOH HOH . C 3 HOH A 129 529 18 HOH HOH . C 3 HOH A 130 530 160 HOH HOH . C 3 HOH A 131 531 179 HOH HOH . C 3 HOH A 132 532 98 HOH HOH . C 3 HOH A 133 533 99 HOH HOH . C 3 HOH A 134 534 57 HOH HOH . C 3 HOH A 135 535 116 HOH HOH . C 3 HOH A 136 536 214 HOH HOH . C 3 HOH A 137 537 79 HOH HOH . C 3 HOH A 138 538 123 HOH HOH . C 3 HOH A 139 539 112 HOH HOH . C 3 HOH A 140 540 149 HOH HOH . C 3 HOH A 141 541 164 HOH HOH . C 3 HOH A 142 542 83 HOH HOH . C 3 HOH A 143 543 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 H5Q . . . B 2 -20.322 5.321 0.356 1 15.01 ? C10 H5Q 301 A 1 HETATM 2 C C17 H5Q . . . B 2 -14.176 8.283 -0.828 1 21.46 ? C17 H5Q 301 A 1 HETATM 3 C C21 H5Q . . . B 2 -11.564 8.974 1.962 1 24.85 ? C21 H5Q 301 A 1 HETATM 4 C C01 H5Q . . . B 2 -25.431 9.824 -5.823 1 37.54 ? C01 H5Q 301 A 1 HETATM 5 C C02 H5Q . . . B 2 -24.366 9.885 -4.775 1 36.99 ? C02 H5Q 301 A 1 HETATM 6 C C03 H5Q . . . B 2 -23.584 8.759 -4.472 1 36.32 ? C03 H5Q 301 A 1 HETATM 7 C C04 H5Q . . . B 2 -22.582 8.791 -3.482 1 35.16 ? C04 H5Q 301 A 1 HETATM 8 C C05 H5Q . . . B 2 -22.318 9.967 -2.738 1 33.26 ? C05 H5Q 301 A 1 HETATM 9 C C07 H5Q . . . B 2 -20.007 8.502 -1.56 1 22.2 ? C07 H5Q 301 A 1 HETATM 10 C C09 H5Q . . . B 2 -19.7 6.266 -0.649 1 16.36 ? C09 H5Q 301 A 1 HETATM 11 C C12 H5Q . . . B 2 -18.2 6.586 -0.451 1 15.01 ? C12 H5Q 301 A 1 HETATM 12 C C14 H5Q . . . B 2 -17.692 7.61 -1.524 1 18.73 ? C14 H5Q 301 A 1 HETATM 13 C C16 H5Q . . . B 2 -15.526 8.311 -0.431 1 18.96 ? C16 H5Q 301 A 1 HETATM 14 C C18 H5Q . . . B 2 -12.955 8.704 -0.115 1 23.43 ? C18 H5Q 301 A 1 HETATM 15 C C19 H5Q . . . B 2 -12.767 8.582 1.274 1 23.26 ? C19 H5Q 301 A 1 HETATM 16 C C23 H5Q . . . B 2 -10.426 9.486 1.307 1 26.97 ? C23 H5Q 301 A 1 HETATM 17 C C25 H5Q . . . B 2 -10.603 9.583 -0.086 1 28.81 ? C25 H5Q 301 A 1 HETATM 18 C C27 H5Q . . . B 2 -11.813 9.2 -0.751 1 27.39 ? C27 H5Q 301 A 1 HETATM 19 C C31 H5Q . . . B 2 -18.5 8.912 -1.405 1 21.71 ? C31 H5Q 301 A 1 HETATM 20 C C33 H5Q . . . B 2 -23.101 11.096 -3.035 1 35.1 ? C33 H5Q 301 A 1 HETATM 21 C C34 H5Q . . . B 2 -24.106 11.049 -4.034 1 36.18 ? C34 H5Q 301 A 1 HETATM 22 F F20 H5Q . . . B 2 -13.774 8.117 1.95 1 24.03 ? F20 H5Q 301 A 1 HETATM 23 F F22 H5Q . . . B 2 -11.508 8.817 3.283 1 27.56 ? F22 H5Q 301 A 1 HETATM 24 F F26 H5Q . . . B 2 -9.584 10.06 -0.817 1 31.5 ? F26 H5Q 301 A 1 HETATM 25 F F28 H5Q . . . B 2 -11.892 9.324 -2.062 1 28.95 ? F28 H5Q 301 A 1 HETATM 26 N N15 H5Q . . . B 2 -16.264 7.756 -1.489 1 18.75 ? N15 H5Q 301 A 1 HETATM 27 N N24 H5Q . . . B 2 -9.248 9.865 1.957 1 27.19 ? N24 H5Q 301 A 1 HETATM 28 N N29 H5Q . . . B 2 -14.201 7.714 -2.122 1 21.91 ? N29 H5Q 301 A 1 HETATM 29 N N30 H5Q . . . B 2 -15.387 7.426 -2.496 1 22.25 ? N30 H5Q 301 A 1 HETATM 30 O O08 H5Q . . . B 2 -20.426 7.543 -0.628 1 18.43 ? O08 H5Q 301 A 1 HETATM 31 O O11 H5Q . . . B 2 -21.638 5.079 -0.052 1 16.38 ? O11 H5Q 301 A 1 HETATM 32 O O13 H5Q . . . B 2 -17.981 7.02 0.818 1 12.86 ? O13 H5Q 301 A 1 HETATM 33 O O32 H5Q . . . B 2 -18.099 9.736 -2.472 1 24.99 ? O32 H5Q 301 A 1 HETATM 34 S S06 H5Q . . . B 2 -21.002 9.976 -1.461 1 28.38 ? S06 H5Q 301 A 1 HETATM 35 H H102 H5Q . . . B 2 -20.313 5.755 1.377 1 18 ? H102 H5Q 301 A 1 HETATM 36 H H101 H5Q . . . B 2 -19.759 4.367 0.415 1 18 ? H101 H5Q 301 A 1 HETATM 37 H H012 H5Q . . . B 2 -26.019 8.886 -5.867 1 45.04 ? H012 H5Q 301 A 1 HETATM 38 H H013 H5Q . . . B 2 -25.09 9.933 -6.872 1 45.04 ? H013 H5Q 301 A 1 HETATM 39 H H011 H5Q . . . B 2 -26.226 10.593 -5.756 1 45.04 ? H011 H5Q 301 A 1 HETATM 40 H H031 H5Q . . . B 2 -23.756 7.827 -5.02 1 43.58 ? H031 H5Q 301 A 1 HETATM 41 H H041 H5Q . . . B 2 -22.014 7.877 -3.305 1 42.18 ? H041 H5Q 301 A 1 HETATM 42 H H071 H5Q . . . B 2 -20.246 8.127 -2.587 1 26.63 ? H071 H5Q 301 A 1 HETATM 43 H H091 H5Q . . . B 2 -19.757 5.808 -1.677 1 19.62 ? H091 H5Q 301 A 1 HETATM 44 H H121 H5Q . . . B 2 -17.53 5.693 -0.511 1 18 ? H121 H5Q 301 A 1 HETATM 45 H H141 H5Q . . . B 2 -17.924 7.123 -2.505 1 22.47 ? H141 H5Q 301 A 1 HETATM 46 H H161 H5Q . . . B 2 -16.003 8.658 0.464 1 22.74 ? H161 H5Q 301 A 1 HETATM 47 H H311 H5Q . . . B 2 -18.328 9.414 -0.442 1 26.04 ? H311 H5Q 301 A 1 HETATM 48 H H331 H5Q . . . B 2 -22.932 12.024 -2.488 1 42.12 ? H331 H5Q 301 A 1 HETATM 49 H H341 H5Q . . . B 2 -24.679 11.963 -4.209 1 43.41 ? H341 H5Q 301 A 1 HETATM 50 H H241 H5Q . . . B 2 -8.977 10.814 2.133 1 32.63 ? H241 H5Q 301 A 1 HETATM 51 H H242 H5Q . . . B 2 -8.562 9.223 2.309 1 32.63 ? H242 H5Q 301 A 1 HETATM 52 H H111 H5Q . . . B 2 -22.068 4.593 0.664 1 19.65 ? H111 H5Q 301 A 1 HETATM 53 H H131 H5Q . . . B 2 -18.435 6.459 1.445 1 15.43 ? H131 H5Q 301 A 1 HETATM 54 H H321 H5Q . . . B 2 -18.168 10.655 -2.197 1 29.98 ? H321 H5Q 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 54 #