data_6I79 # _model_server_result.job_id zuE5hIjrcsYYmJH6bSKY9w _model_server_result.datetime_utc '2024-11-16 22:21:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6I79 # _exptl.entry_id 6I79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.358 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(4-~{tert}-butyl-1,3-thiazol-2-yl)methyl]-4,6-diazaspiro[2.4]heptane-5,7-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.51 _cell.angle_gamma 90 _cell.entry_id 6I79 _cell.length_a 46.783 _cell.length_b 99.496 _cell.length_c 55.109 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C13 H17 N3 O2 S' _chem_comp.formula_weight 279.358 _chem_comp.id H5E _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(4-~{tert}-butyl-1,3-thiazol-2-yl)methyl]-4,6-diazaspiro[2.4]heptane-5,7-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 H5E sing 129 n n C4 C2 H5E sing 130 n n C2 C1 H5E sing 131 n n C2 C5 H5E sing 132 n n C5 C6 H5E doub 133 n y C5 N19 H5E sing 134 n y C6 S7 H5E sing 135 n y N19 C8 H5E doub 136 n y O18 C17 H5E doub 137 n n C16 C14 H5E sing 138 n n C16 C15 H5E sing 139 n n C8 S7 H5E sing 140 n y C8 C9 H5E sing 141 n n C17 C14 H5E sing 142 n n C17 N10 H5E sing 143 n n C14 C15 H5E sing 144 n n C14 N13 H5E sing 145 n n C9 N10 H5E sing 146 n n N10 C11 H5E sing 147 n n N13 C11 H5E sing 148 n n C11 O12 H5E doub 149 n n C1 H1 H5E sing 150 n n C1 H2 H5E sing 151 n n C1 H3 H5E sing 152 n n C3 H4 H5E sing 153 n n C3 H5 H5E sing 154 n n C3 H6 H5E sing 155 n n C4 H7 H5E sing 156 n n C4 H8 H5E sing 157 n n C4 H9 H5E sing 158 n n C6 H10 H5E sing 159 n n N13 H11 H5E sing 160 n n C15 H12 H5E sing 161 n n C15 H13 H5E sing 162 n n C16 H14 H5E sing 163 n n C16 H15 H5E sing 164 n n C9 H16 H5E sing 165 n n C9 H17 H5E sing 166 n n # _atom_sites.entry_id 6I79 _atom_sites.fract_transf_matrix[1][1] 0.021375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002063 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 301 NAP NAP . D 3 H5E A 1 302 1 H5E INX . E 2 NAP B 1 301 301 NAP NAP . F 3 H5E B 1 302 2 H5E INX . G 4 HOH A 1 401 294 HOH HOH . G 4 HOH A 2 402 148 HOH HOH . G 4 HOH A 3 403 14 HOH HOH . G 4 HOH A 4 404 135 HOH HOH . G 4 HOH A 5 405 198 HOH HOH . G 4 HOH A 6 406 204 HOH HOH . G 4 HOH A 7 407 154 HOH HOH . G 4 HOH A 8 408 139 HOH HOH . G 4 HOH A 9 409 254 HOH HOH . G 4 HOH A 10 410 191 HOH HOH . G 4 HOH A 11 411 205 HOH HOH . G 4 HOH A 12 412 194 HOH HOH . G 4 HOH A 13 413 41 HOH HOH . G 4 HOH A 14 414 93 HOH HOH . G 4 HOH A 15 415 15 HOH HOH . G 4 HOH A 16 416 44 HOH HOH . G 4 HOH A 17 417 210 HOH HOH . G 4 HOH A 18 418 27 HOH HOH . G 4 HOH A 19 419 215 HOH HOH . G 4 HOH A 20 420 128 HOH HOH . G 4 HOH A 21 421 92 HOH HOH . G 4 HOH A 22 422 84 HOH HOH . G 4 HOH A 23 423 75 HOH HOH . G 4 HOH A 24 424 267 HOH HOH . G 4 HOH A 25 425 11 HOH HOH . G 4 HOH A 26 426 12 HOH HOH . G 4 HOH A 27 427 217 HOH HOH . G 4 HOH A 28 428 6 HOH HOH . G 4 HOH A 29 429 50 HOH HOH . G 4 HOH A 30 430 122 HOH HOH . G 4 HOH A 31 431 42 HOH HOH . G 4 HOH A 32 432 169 HOH HOH . G 4 HOH A 33 433 28 HOH HOH . G 4 HOH A 34 434 272 HOH HOH . G 4 HOH A 35 435 153 HOH HOH . G 4 HOH A 36 436 208 HOH HOH . G 4 HOH A 37 437 119 HOH HOH . G 4 HOH A 38 438 46 HOH HOH . G 4 HOH A 39 439 178 HOH HOH . G 4 HOH A 40 440 62 HOH HOH . G 4 HOH A 41 441 145 HOH HOH . G 4 HOH A 42 442 223 HOH HOH . G 4 HOH A 43 443 103 HOH HOH . G 4 HOH A 44 444 222 HOH HOH . G 4 HOH A 45 445 167 HOH HOH . G 4 HOH A 46 446 287 HOH HOH . G 4 HOH A 47 447 64 HOH HOH . G 4 HOH A 48 448 115 HOH HOH . G 4 HOH A 49 449 30 HOH HOH . G 4 HOH A 50 450 251 HOH HOH . G 4 HOH A 51 451 207 HOH HOH . G 4 HOH A 52 452 2 HOH HOH . G 4 HOH A 53 453 216 HOH HOH . G 4 HOH A 54 454 113 HOH HOH . G 4 HOH A 55 455 71 HOH HOH . G 4 HOH A 56 456 193 HOH HOH . G 4 HOH A 57 457 114 HOH HOH . G 4 HOH A 58 458 140 HOH HOH . G 4 HOH A 59 459 253 HOH HOH . G 4 HOH A 60 460 55 HOH HOH . G 4 HOH A 61 461 227 HOH HOH . G 4 HOH A 62 462 138 HOH HOH . G 4 HOH A 63 463 174 HOH HOH . G 4 HOH A 64 464 66 HOH HOH . G 4 HOH A 65 465 54 HOH HOH . G 4 HOH A 66 466 180 HOH HOH . G 4 HOH A 67 467 97 HOH HOH . G 4 HOH A 68 468 149 HOH HOH . G 4 HOH A 69 469 151 HOH HOH . G 4 HOH A 70 470 39 HOH HOH . G 4 HOH A 71 471 124 HOH HOH . G 4 HOH A 72 472 105 HOH HOH . G 4 HOH A 73 473 95 HOH HOH . G 4 HOH A 74 474 134 HOH HOH . G 4 HOH A 75 475 296 HOH HOH . G 4 HOH A 76 476 221 HOH HOH . G 4 HOH A 77 477 102 HOH HOH . G 4 HOH A 78 478 101 HOH HOH . G 4 HOH A 79 479 22 HOH HOH . G 4 HOH A 80 480 130 HOH HOH . G 4 HOH A 81 481 190 HOH HOH . G 4 HOH A 82 482 13 HOH HOH . G 4 HOH A 83 483 86 HOH HOH . G 4 HOH A 84 484 87 HOH HOH . G 4 HOH A 85 485 141 HOH HOH . G 4 HOH A 86 486 10 HOH HOH . G 4 HOH A 87 487 112 HOH HOH . G 4 HOH A 88 488 211 HOH HOH . G 4 HOH A 89 489 219 HOH HOH . G 4 HOH A 90 490 24 HOH HOH . G 4 HOH A 91 491 260 HOH HOH . G 4 HOH A 92 492 26 HOH HOH . G 4 HOH A 93 493 262 HOH HOH . G 4 HOH A 94 494 9 HOH HOH . G 4 HOH A 95 495 90 HOH HOH . G 4 HOH A 96 496 85 HOH HOH . G 4 HOH A 97 497 291 HOH HOH . G 4 HOH A 98 498 99 HOH HOH . G 4 HOH A 99 499 206 HOH HOH . G 4 HOH A 100 500 229 HOH HOH . G 4 HOH A 101 501 290 HOH HOH . G 4 HOH A 102 502 23 HOH HOH . G 4 HOH A 103 503 214 HOH HOH . G 4 HOH A 104 504 183 HOH HOH . G 4 HOH A 105 505 36 HOH HOH . G 4 HOH A 106 506 203 HOH HOH . G 4 HOH A 107 507 298 HOH HOH . G 4 HOH A 108 508 281 HOH HOH . G 4 HOH A 109 509 283 HOH HOH . G 4 HOH A 110 510 170 HOH HOH . G 4 HOH A 111 511 218 HOH HOH . G 4 HOH A 112 512 226 HOH HOH . G 4 HOH A 113 513 38 HOH HOH . G 4 HOH A 114 514 98 HOH HOH . G 4 HOH A 115 515 147 HOH HOH . G 4 HOH A 116 516 228 HOH HOH . G 4 HOH A 117 517 268 HOH HOH . G 4 HOH A 118 518 201 HOH HOH . G 4 HOH A 119 519 224 HOH HOH . G 4 HOH A 120 520 225 HOH HOH . G 4 HOH A 121 521 202 HOH HOH . G 4 HOH A 122 522 220 HOH HOH . G 4 HOH A 123 523 261 HOH HOH . G 4 HOH A 124 524 230 HOH HOH . G 4 HOH A 125 525 159 HOH HOH . G 4 HOH A 126 526 192 HOH HOH . G 4 HOH A 127 527 146 HOH HOH . H 4 HOH B 1 401 195 HOH HOH . H 4 HOH B 2 402 189 HOH HOH . H 4 HOH B 3 403 100 HOH HOH . H 4 HOH B 4 404 249 HOH HOH . H 4 HOH B 5 405 20 HOH HOH . H 4 HOH B 6 406 196 HOH HOH . H 4 HOH B 7 407 293 HOH HOH . H 4 HOH B 8 408 51 HOH HOH . H 4 HOH B 9 409 18 HOH HOH . H 4 HOH B 10 410 60 HOH HOH . H 4 HOH B 11 411 48 HOH HOH . H 4 HOH B 12 412 94 HOH HOH . H 4 HOH B 13 413 108 HOH HOH . H 4 HOH B 14 414 199 HOH HOH . H 4 HOH B 15 415 80 HOH HOH . H 4 HOH B 16 416 43 HOH HOH . H 4 HOH B 17 417 246 HOH HOH . H 4 HOH B 18 418 242 HOH HOH . H 4 HOH B 19 419 278 HOH HOH . H 4 HOH B 20 420 171 HOH HOH . H 4 HOH B 21 421 8 HOH HOH . H 4 HOH B 22 422 59 HOH HOH . H 4 HOH B 23 423 166 HOH HOH . H 4 HOH B 24 424 132 HOH HOH . H 4 HOH B 25 425 232 HOH HOH . H 4 HOH B 26 426 240 HOH HOH . H 4 HOH B 27 427 53 HOH HOH . H 4 HOH B 28 428 88 HOH HOH . H 4 HOH B 29 429 133 HOH HOH . H 4 HOH B 30 430 273 HOH HOH . H 4 HOH B 31 431 89 HOH HOH . H 4 HOH B 32 432 136 HOH HOH . H 4 HOH B 33 433 150 HOH HOH . H 4 HOH B 34 434 58 HOH HOH . H 4 HOH B 35 435 107 HOH HOH . H 4 HOH B 36 436 233 HOH HOH . H 4 HOH B 37 437 271 HOH HOH . H 4 HOH B 38 438 142 HOH HOH . H 4 HOH B 39 439 239 HOH HOH . H 4 HOH B 40 440 81 HOH HOH . H 4 HOH B 41 441 31 HOH HOH . H 4 HOH B 42 442 143 HOH HOH . H 4 HOH B 43 443 282 HOH HOH . H 4 HOH B 44 444 248 HOH HOH . H 4 HOH B 45 445 266 HOH HOH . H 4 HOH B 46 446 275 HOH HOH . H 4 HOH B 47 447 45 HOH HOH . H 4 HOH B 48 448 152 HOH HOH . H 4 HOH B 49 449 29 HOH HOH . H 4 HOH B 50 450 82 HOH HOH . H 4 HOH B 51 451 177 HOH HOH . H 4 HOH B 52 452 77 HOH HOH . H 4 HOH B 53 453 175 HOH HOH . H 4 HOH B 54 454 173 HOH HOH . H 4 HOH B 55 455 49 HOH HOH . H 4 HOH B 56 456 79 HOH HOH . H 4 HOH B 57 457 16 HOH HOH . H 4 HOH B 58 458 111 HOH HOH . H 4 HOH B 59 459 35 HOH HOH . H 4 HOH B 60 460 33 HOH HOH . H 4 HOH B 61 461 231 HOH HOH . H 4 HOH B 62 462 252 HOH HOH . H 4 HOH B 63 463 72 HOH HOH . H 4 HOH B 64 464 243 HOH HOH . H 4 HOH B 65 465 286 HOH HOH . H 4 HOH B 66 466 70 HOH HOH . H 4 HOH B 67 467 17 HOH HOH . H 4 HOH B 68 468 52 HOH HOH . H 4 HOH B 69 469 118 HOH HOH . H 4 HOH B 70 470 241 HOH HOH . H 4 HOH B 71 471 3 HOH HOH . H 4 HOH B 72 472 1 HOH HOH . H 4 HOH B 73 473 188 HOH HOH . H 4 HOH B 74 474 76 HOH HOH . H 4 HOH B 75 475 73 HOH HOH . H 4 HOH B 76 476 7 HOH HOH . H 4 HOH B 77 477 65 HOH HOH . H 4 HOH B 78 478 244 HOH HOH . H 4 HOH B 79 479 4 HOH HOH . H 4 HOH B 80 480 67 HOH HOH . H 4 HOH B 81 481 116 HOH HOH . H 4 HOH B 82 482 5 HOH HOH . H 4 HOH B 83 483 245 HOH HOH . H 4 HOH B 84 484 110 HOH HOH . H 4 HOH B 85 485 144 HOH HOH . H 4 HOH B 86 486 237 HOH HOH . H 4 HOH B 87 487 47 HOH HOH . H 4 HOH B 88 488 276 HOH HOH . H 4 HOH B 89 489 61 HOH HOH . H 4 HOH B 90 490 63 HOH HOH . H 4 HOH B 91 491 209 HOH HOH . H 4 HOH B 92 492 126 HOH HOH . H 4 HOH B 93 493 56 HOH HOH . H 4 HOH B 94 494 78 HOH HOH . H 4 HOH B 95 495 123 HOH HOH . H 4 HOH B 96 496 68 HOH HOH . H 4 HOH B 97 497 106 HOH HOH . H 4 HOH B 98 498 19 HOH HOH . H 4 HOH B 99 499 21 HOH HOH . H 4 HOH B 100 500 277 HOH HOH . H 4 HOH B 101 501 165 HOH HOH . H 4 HOH B 102 502 25 HOH HOH . H 4 HOH B 103 503 34 HOH HOH . H 4 HOH B 104 504 104 HOH HOH . H 4 HOH B 105 505 117 HOH HOH . H 4 HOH B 106 506 156 HOH HOH . H 4 HOH B 107 507 179 HOH HOH . H 4 HOH B 108 508 264 HOH HOH . H 4 HOH B 109 509 258 HOH HOH . H 4 HOH B 110 510 297 HOH HOH . H 4 HOH B 111 511 186 HOH HOH . H 4 HOH B 112 512 274 HOH HOH . H 4 HOH B 113 513 257 HOH HOH . H 4 HOH B 114 514 197 HOH HOH . H 4 HOH B 115 515 187 HOH HOH . H 4 HOH B 116 516 265 HOH HOH . H 4 HOH B 117 517 127 HOH HOH . H 4 HOH B 118 518 121 HOH HOH . H 4 HOH B 119 519 234 HOH HOH . H 4 HOH B 120 520 235 HOH HOH . H 4 HOH B 121 521 129 HOH HOH . H 4 HOH B 122 522 285 HOH HOH . H 4 HOH B 123 523 155 HOH HOH . H 4 HOH B 124 524 259 HOH HOH . H 4 HOH B 125 525 120 HOH HOH . H 4 HOH B 126 526 255 HOH HOH . H 4 HOH B 127 527 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H5E . . . F 3 23.425 10.702 23.922 1 31.22 ? C1 H5E 302 B 1 HETATM 2 C C2 H5E . . . F 3 21.97 10.562 24.463 1 29.77 ? C2 H5E 302 B 1 HETATM 3 C C3 H5E . . . F 3 21.605 11.82 25.321 1 32.6 ? C3 H5E 302 B 1 HETATM 4 C C4 H5E . . . F 3 21.867 9.301 25.373 1 32.75 ? C4 H5E 302 B 1 HETATM 5 C C5 H5E . . . F 3 21.007 10.55 23.243 1 29.95 ? C5 H5E 302 B 1 HETATM 6 C C6 H5E . . . F 3 20.045 9.648 22.955 1 35.31 ? C6 H5E 302 B 1 HETATM 7 C C8 H5E . . . F 3 20.19 11.468 21.361 1 35.01 ? C8 H5E 302 B 1 HETATM 8 N N10 H5E . . . F 3 18.74 12.534 19.692 1 31.1 ? N10 H5E 302 B 1 HETATM 9 C C11 H5E . . . F 3 18.286 11.769 18.686 1 31.11 ? C11 H5E 302 B 1 HETATM 10 N N13 H5E . . . F 3 17.018 12.043 18.368 1 25.96 ? N13 H5E 302 B 1 HETATM 11 C C15 H5E . . . F 3 15.762 14.285 18.746 1 28.89 ? C15 H5E 302 B 1 HETATM 12 C C16 H5E . . . F 3 15.151 13.279 19.714 1 30.15 ? C16 H5E 302 B 1 HETATM 13 C C17 H5E . . . F 3 17.783 13.371 20.126 1 30.7 ? C17 H5E 302 B 1 HETATM 14 S S7 H5E . . . F 3 19.203 10.089 21.487 1 41.89 ? S7 H5E 302 B 1 HETATM 15 C C9 H5E . . . F 3 20.1 12.467 20.251 1 32.01 ? C9 H5E 302 B 1 HETATM 16 O O12 H5E . . . F 3 18.924 10.911 18.114 1 27.78 ? O12 H5E 302 B 1 HETATM 17 C C14 H5E . . . F 3 16.585 13.114 19.257 1 29.57 ? C14 H5E 302 B 1 HETATM 18 O O18 H5E . . . F 3 17.846 14.159 21.027 1 31.23 ? O18 H5E 302 B 1 HETATM 19 N N19 H5E . . . F 3 21.032 11.528 22.333 1 25.8 ? N19 H5E 302 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #