data_6I7F # _model_server_result.job_id sB-N8Kfiiea3tMX-32zDNQ _model_server_result.datetime_utc '2024-11-07 06:39:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6I7F # _exptl.entry_id 6I7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I7F _cell.length_a 60.94 _cell.length_b 67.15 _cell.length_c 68.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 6I7F _atom_sites.fract_transf_matrix[1][1] 0.01641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 201 HEM HEM . D 3 5JC A 1 202 301 5JC 5JC . E 4 SO4 A 1 203 1 SO4 SO4 . F 4 SO4 A 1 204 2 SO4 SO4 . G 2 HEM B 1 201 201 HEM HEM . H 3 5JC B 1 202 301 5JC 5JC . I 5 HOH A 1 301 109 HOH HOH . I 5 HOH A 2 302 12 HOH HOH . I 5 HOH A 3 303 33 HOH HOH . I 5 HOH A 4 304 9 HOH HOH . I 5 HOH A 5 305 96 HOH HOH . I 5 HOH A 6 306 22 HOH HOH . I 5 HOH A 7 307 71 HOH HOH . I 5 HOH A 8 308 62 HOH HOH . I 5 HOH A 9 309 1 HOH HOH . I 5 HOH A 10 310 4 HOH HOH . I 5 HOH A 11 311 37 HOH HOH . I 5 HOH A 12 312 58 HOH HOH . I 5 HOH A 13 313 34 HOH HOH . I 5 HOH A 14 314 18 HOH HOH . I 5 HOH A 15 315 69 HOH HOH . I 5 HOH A 16 316 66 HOH HOH . I 5 HOH A 17 317 32 HOH HOH . I 5 HOH A 18 318 25 HOH HOH . I 5 HOH A 19 319 6 HOH HOH . I 5 HOH A 20 320 64 HOH HOH . I 5 HOH A 21 321 92 HOH HOH . I 5 HOH A 22 322 19 HOH HOH . I 5 HOH A 23 323 36 HOH HOH . I 5 HOH A 24 324 56 HOH HOH . I 5 HOH A 25 325 8 HOH HOH . I 5 HOH A 26 326 79 HOH HOH . I 5 HOH A 27 327 85 HOH HOH . I 5 HOH A 28 328 55 HOH HOH . I 5 HOH A 29 329 63 HOH HOH . I 5 HOH A 30 330 50 HOH HOH . I 5 HOH A 31 331 93 HOH HOH . I 5 HOH A 32 332 54 HOH HOH . I 5 HOH A 33 333 83 HOH HOH . I 5 HOH A 34 334 24 HOH HOH . I 5 HOH A 35 335 20 HOH HOH . I 5 HOH A 36 336 57 HOH HOH . I 5 HOH A 37 337 11 HOH HOH . I 5 HOH A 38 338 39 HOH HOH . I 5 HOH A 39 339 78 HOH HOH . I 5 HOH A 40 340 13 HOH HOH . I 5 HOH A 41 341 17 HOH HOH . I 5 HOH A 42 342 15 HOH HOH . I 5 HOH A 43 343 68 HOH HOH . I 5 HOH A 44 344 75 HOH HOH . J 5 HOH B 1 301 65 HOH HOH . J 5 HOH B 2 302 51 HOH HOH . J 5 HOH B 3 303 2 HOH HOH . J 5 HOH B 4 304 40 HOH HOH . J 5 HOH B 5 305 90 HOH HOH . J 5 HOH B 6 306 38 HOH HOH . J 5 HOH B 7 307 14 HOH HOH . J 5 HOH B 8 308 60 HOH HOH . J 5 HOH B 9 309 16 HOH HOH . J 5 HOH B 10 310 73 HOH HOH . J 5 HOH B 11 311 7 HOH HOH . J 5 HOH B 12 312 44 HOH HOH . J 5 HOH B 13 313 29 HOH HOH . J 5 HOH B 14 314 5 HOH HOH . J 5 HOH B 15 315 30 HOH HOH . J 5 HOH B 16 316 49 HOH HOH . J 5 HOH B 17 317 27 HOH HOH . J 5 HOH B 18 318 23 HOH HOH . J 5 HOH B 19 319 47 HOH HOH . J 5 HOH B 20 320 74 HOH HOH . J 5 HOH B 21 321 43 HOH HOH . J 5 HOH B 22 322 52 HOH HOH . J 5 HOH B 23 323 28 HOH HOH . J 5 HOH B 24 324 10 HOH HOH . J 5 HOH B 25 325 26 HOH HOH . J 5 HOH B 26 326 31 HOH HOH . J 5 HOH B 27 327 77 HOH HOH . J 5 HOH B 28 328 105 HOH HOH . J 5 HOH B 29 329 82 HOH HOH . J 5 HOH B 30 330 80 HOH HOH . J 5 HOH B 31 331 46 HOH HOH . J 5 HOH B 32 332 61 HOH HOH . J 5 HOH B 33 333 53 HOH HOH . J 5 HOH B 34 334 48 HOH HOH . J 5 HOH B 35 335 59 HOH HOH . J 5 HOH B 36 336 76 HOH HOH . J 5 HOH B 37 337 21 HOH HOH . J 5 HOH B 38 338 35 HOH HOH . J 5 HOH B 39 339 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 -21.749 -4.997 -22.738 1 41.01 ? CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . G 2 -20.551 -0.597 -24.415 1 33.99 ? CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . G 2 -24.42 1.31 -22.351 1 38.18 ? CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . G 2 -25.759 -3.118 -21.017 1 40.19 ? CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . G 2 -21.09 -3.928 -23.302 1 38.15 ? C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . G 2 -19.767 -4.014 -23.86 1 36.71 ? C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . G 2 -19.427 -2.808 -24.319 1 35.93 ? C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . G 2 -20.545 -1.927 -24.083 1 35.35 ? C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . G 2 -18.083 -2.439 -24.981 1 39.12 ? CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . G 2 -18.897 -5.3 -23.854 1 43.44 ? CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . G 2 -18.075 -5.245 -22.556 1 47.67 ? CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . G 2 -17.609 -6.601 -22.103 1 55.35 ? CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . G 2 -18.021 -7.038 -20.985 1 47.98 ? O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . G 2 -16.836 -7.225 -22.873 1 56.93 ? O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . G 2 -21.436 0.328 -23.966 1 32.54 ? C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . G 2 -21.364 1.774 -24.089 1 31.39 ? C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . G 2 -22.445 2.314 -23.489 1 33.32 ? C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . G 2 -23.225 1.205 -23.008 1 35.88 ? C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . G 2 -20.197 2.521 -24.745 1 33.85 ? CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . G 2 -22.9 3.789 -23.332 1 36.14 ? CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . G 2 -22.639 4.736 -24.247 1 37.85 ? CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . G 2 -25.069 0.255 -21.798 1 37.74 ? C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . G 2 -26.249 0.359 -20.979 1 38.5 ? C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . G 2 -26.614 -0.865 -20.635 1 39.41 ? C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . G 2 -25.656 -1.779 -21.195 1 40.57 ? C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . G 2 -26.975 1.654 -20.601 1 39.19 ? CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . G 2 -27.798 -1.312 -19.724 1 44.39 ? CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . G 2 -28.395 -0.488 -18.851 1 46.93 ? CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . G 2 -24.803 -4.012 -21.336 1 37.55 ? C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . G 2 -24.834 -5.415 -21.006 1 40.65 ? C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . G 2 -23.724 -5.966 -21.482 1 41.58 ? C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . G 2 -22.961 -4.902 -22.119 1 39.99 ? C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . G 2 -25.982 -6.113 -20.244 1 43.37 ? CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . G 2 -23.304 -7.45 -21.37 1 46.27 ? CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . G 2 -22.435 -7.531 -20.129 1 46.93 ? CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . G 2 -22.071 -8.963 -19.835 1 56.23 ? CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . G 2 -21.337 -9.207 -18.842 1 62.86 ? O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . G 2 -22.529 -9.845 -20.601 1 60.26 ? O2D HEM 201 B 1 HETATM 39 N NA HEM . . . G 2 -21.576 -2.63 -23.449 1 36.09 ? NA HEM 201 B 1 HETATM 40 N NB HEM . . . G 2 -22.577 0.026 -23.305 1 34.09 ? NB HEM 201 B 1 HETATM 41 N NC HEM . . . G 2 -24.704 -1.083 -21.931 1 38.15 ? NC HEM 201 B 1 HETATM 42 N ND HEM . . . G 2 -23.662 -3.734 -21.994 1 37.43 ? ND HEM 201 B 1 HETATM 43 FE FE HEM . . . G 2 -23.231 -1.885 -22.893 1 37.4 ? FE HEM 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #