data_6I7I # _model_server_result.job_id cHDBBWUWS-on_T02DA9mdA _model_server_result.datetime_utc '2024-11-04 23:40:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6I7I # _exptl.entry_id 6I7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I7I _cell.length_a 41.902 _cell.length_b 73.983 _cell.length_c 134.039 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -73.983 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 265 A ASP 367 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 B MG MG . A MG 501 1_555 C O2A ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 B MG MG . A MG 501 1_555 C O2B ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 B MG MG . A MG 501 1_555 E O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc5 B MG MG . A MG 501 1_555 E O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc6 B MG MG . A MG 501 1_555 E O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6I7I _atom_sites.fract_transf_matrix[1][1] 0.023865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 3 ATP A 1 502 502 ATP ATP . D 4 P33 A 1 503 503 P33 P33 . E 5 HOH A 1 601 514 HOH HOH . E 5 HOH A 2 602 521 HOH HOH . E 5 HOH A 3 603 519 HOH HOH . E 5 HOH A 4 604 520 HOH HOH . E 5 HOH A 5 605 506 HOH HOH . E 5 HOH A 6 606 518 HOH HOH . E 5 HOH A 7 607 548 HOH HOH . E 5 HOH A 8 608 531 HOH HOH . E 5 HOH A 9 609 535 HOH HOH . E 5 HOH A 10 610 539 HOH HOH . E 5 HOH A 11 611 567 HOH HOH . E 5 HOH A 12 612 510 HOH HOH . E 5 HOH A 13 613 561 HOH HOH . E 5 HOH A 14 614 556 HOH HOH . E 5 HOH A 15 615 522 HOH HOH . E 5 HOH A 16 616 529 HOH HOH . E 5 HOH A 17 617 505 HOH HOH . E 5 HOH A 18 618 563 HOH HOH . E 5 HOH A 19 619 512 HOH HOH . E 5 HOH A 20 620 508 HOH HOH . E 5 HOH A 21 621 555 HOH HOH . E 5 HOH A 22 622 532 HOH HOH . E 5 HOH A 23 623 538 HOH HOH . E 5 HOH A 24 624 541 HOH HOH . E 5 HOH A 25 625 537 HOH HOH . E 5 HOH A 26 626 527 HOH HOH . E 5 HOH A 27 627 534 HOH HOH . E 5 HOH A 28 628 558 HOH HOH . E 5 HOH A 29 629 568 HOH HOH . E 5 HOH A 30 630 557 HOH HOH . E 5 HOH A 31 631 528 HOH HOH . E 5 HOH A 32 632 544 HOH HOH . E 5 HOH A 33 633 547 HOH HOH . E 5 HOH A 34 634 545 HOH HOH . E 5 HOH A 35 635 524 HOH HOH . E 5 HOH A 36 636 562 HOH HOH . E 5 HOH A 37 637 517 HOH HOH . E 5 HOH A 38 638 554 HOH HOH . E 5 HOH A 39 639 546 HOH HOH . E 5 HOH A 40 640 536 HOH HOH . E 5 HOH A 41 641 549 HOH HOH . E 5 HOH A 42 642 540 HOH HOH . E 5 HOH A 43 643 552 HOH HOH . E 5 HOH A 44 644 566 HOH HOH . E 5 HOH A 45 645 542 HOH HOH . E 5 HOH A 46 646 513 HOH HOH . E 5 HOH A 47 647 526 HOH HOH . E 5 HOH A 48 648 515 HOH HOH . E 5 HOH A 49 649 525 HOH HOH . E 5 HOH A 50 650 553 HOH HOH . E 5 HOH A 51 651 516 HOH HOH . E 5 HOH A 52 652 523 HOH HOH . E 5 HOH A 53 653 530 HOH HOH . E 5 HOH A 54 654 550 HOH HOH . E 5 HOH A 55 655 564 HOH HOH . E 5 HOH A 56 656 551 HOH HOH . E 5 HOH A 57 657 559 HOH HOH . E 5 HOH A 58 658 543 HOH HOH . E 5 HOH A 59 659 565 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 -12.935 -30.695 16.308 0.5 50.05 ? PG ATP 502 A 1 HETATM 2 O O1G ATP . . . C 3 -12.358 -30.62 14.913 0.5 49.29 ? O1G ATP 502 A 1 HETATM 3 O O2G ATP . . . C 3 -11.919 -30.798 17.42 0.5 49.67 ? O2G ATP 502 A 1 HETATM 4 O O3G ATP . . . C 3 -14.018 -29.683 16.587 0.5 49.52 ? O3G ATP 502 A 1 HETATM 5 P PB ATP . . . C 3 -14.938 -32.419 15.358 1 46.42 ? PB ATP 502 A 1 HETATM 6 O O1B ATP . . . C 3 -15.183 -31.211 14.486 1 46.24 ? O1B ATP 502 A 1 HETATM 7 O O2B ATP . . . C 3 -14.724 -33.772 14.724 1 46.37 ? O2B ATP 502 A 1 HETATM 8 O O3B ATP . . . C 3 -13.687 -32.12 16.327 1 48.42 ? O3B ATP 502 A 1 HETATM 9 P PA ATP . . . C 3 -16.711 -33.935 16.93 1 43.96 ? PA ATP 502 A 1 HETATM 10 O O1A ATP . . . C 3 -17.998 -34.249 16.213 1 43.74 ? O1A ATP 502 A 1 HETATM 11 O O2A ATP . . . C 3 -15.58 -34.932 16.897 1 44.49 ? O2A ATP 502 A 1 HETATM 12 O O3A ATP . . . C 3 -16.17 -32.52 16.39 1 45.47 ? O3A ATP 502 A 1 HETATM 13 O O5' ATP . . . C 3 -17.058 -33.596 18.465 1 44.3 ? O5' ATP 502 A 1 HETATM 14 C C5' ATP . . . C 3 -16.115 -32.932 19.311 1 43.98 ? C5' ATP 502 A 1 HETATM 15 C C4' ATP . . . C 3 -16.588 -31.508 19.565 1 43.61 ? C4' ATP 502 A 1 HETATM 16 O O4' ATP . . . C 3 -17.635 -31.489 20.541 1 43.05 ? O4' ATP 502 A 1 HETATM 17 C C3' ATP . . . C 3 -15.498 -30.596 20.107 1 43.42 ? C3' ATP 502 A 1 HETATM 18 O O3' ATP . . . C 3 -14.733 -29.974 19.071 1 44.4 ? O3' ATP 502 A 1 HETATM 19 C C2' ATP . . . C 3 -16.275 -29.58 20.913 1 43.11 ? C2' ATP 502 A 1 HETATM 20 O O2' ATP . . . C 3 -16.666 -28.473 20.097 1 42.98 ? O2' ATP 502 A 1 HETATM 21 C C1' ATP . . . C 3 -17.507 -30.339 21.386 1 43.12 ? C1' ATP 502 A 1 HETATM 22 N N9 ATP . . . C 3 -17.379 -30.713 22.822 1 43.13 ? N9 ATP 502 A 1 HETATM 23 C C8 ATP . . . C 3 -16.257 -31.152 23.43 1 43.3 ? C8 ATP 502 A 1 HETATM 24 N N7 ATP . . . C 3 -16.478 -31.39 24.747 1 42.97 ? N7 ATP 502 A 1 HETATM 25 C C5 ATP . . . C 3 -17.764 -31.104 24.998 1 42.96 ? C5 ATP 502 A 1 HETATM 26 C C6 ATP . . . C 3 -18.641 -31.141 26.189 1 43.14 ? C6 ATP 502 A 1 HETATM 27 N N6 ATP . . . C 3 -18.141 -31.549 27.381 1 43.4 ? N6 ATP 502 A 1 HETATM 28 N N1 ATP . . . C 3 -19.932 -30.76 26.034 1 42.83 ? N1 ATP 502 A 1 HETATM 29 C C2 ATP . . . C 3 -20.42 -30.358 24.839 1 43.05 ? C2 ATP 502 A 1 HETATM 30 N N3 ATP . . . C 3 -19.671 -30.303 23.716 1 42.96 ? N3 ATP 502 A 1 HETATM 31 C C4 ATP . . . C 3 -18.358 -30.656 23.729 1 43.02 ? C4 ATP 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #