data_6I7K # _model_server_result.job_id SrBXSDi99YPbjpvwD9H-1g _model_server_result.datetime_utc '2024-11-22 22:57:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6I7K # _exptl.entry_id 6I7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6I7K _cell.length_a 186.842 _cell.length_b 186.842 _cell.length_c 76.844 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 265 A ASP 367 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 B MG MG . A MG 501 1_555 C O1A ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc3 B MG MG . A MG 501 1_555 C O1B ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 B MG MG . A MG 501 1_555 E O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc5 B MG MG . A MG 501 1_555 E O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 B MG MG . A MG 501 1_555 E O HOH . A HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6I7K _atom_sites.fract_transf_matrix[1][1] 0.005352 _atom_sites.fract_transf_matrix[1][2] 0.00309 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 3 ATP A 1 502 502 ATP ATP . D 4 EOH A 1 503 619 EOH EOH . E 5 HOH A 1 601 517 HOH HOH . E 5 HOH A 2 602 587 HOH HOH . E 5 HOH A 3 603 544 HOH HOH . E 5 HOH A 4 604 546 HOH HOH . E 5 HOH A 5 605 526 HOH HOH . E 5 HOH A 6 606 573 HOH HOH . E 5 HOH A 7 607 535 HOH HOH . E 5 HOH A 8 608 520 HOH HOH . E 5 HOH A 9 609 553 HOH HOH . E 5 HOH A 10 610 603 HOH HOH . E 5 HOH A 11 611 539 HOH HOH . E 5 HOH A 12 612 504 HOH HOH . E 5 HOH A 13 613 518 HOH HOH . E 5 HOH A 14 614 511 HOH HOH . E 5 HOH A 15 615 542 HOH HOH . E 5 HOH A 16 616 617 HOH HOH . E 5 HOH A 17 617 540 HOH HOH . E 5 HOH A 18 618 503 HOH HOH . E 5 HOH A 19 619 512 HOH HOH . E 5 HOH A 20 620 515 HOH HOH . E 5 HOH A 21 621 583 HOH HOH . E 5 HOH A 22 622 593 HOH HOH . E 5 HOH A 23 623 606 HOH HOH . E 5 HOH A 24 624 543 HOH HOH . E 5 HOH A 25 625 608 HOH HOH . E 5 HOH A 26 626 505 HOH HOH . E 5 HOH A 27 627 561 HOH HOH . E 5 HOH A 28 628 605 HOH HOH . E 5 HOH A 29 629 613 HOH HOH . E 5 HOH A 30 630 595 HOH HOH . E 5 HOH A 31 631 513 HOH HOH . E 5 HOH A 32 632 541 HOH HOH . E 5 HOH A 33 633 577 HOH HOH . E 5 HOH A 34 634 558 HOH HOH . E 5 HOH A 35 635 611 HOH HOH . E 5 HOH A 36 636 571 HOH HOH . E 5 HOH A 37 637 568 HOH HOH . E 5 HOH A 38 638 552 HOH HOH . E 5 HOH A 39 639 547 HOH HOH . E 5 HOH A 40 640 534 HOH HOH . E 5 HOH A 41 641 524 HOH HOH . E 5 HOH A 42 642 579 HOH HOH . E 5 HOH A 43 643 514 HOH HOH . E 5 HOH A 44 644 528 HOH HOH . E 5 HOH A 45 645 607 HOH HOH . E 5 HOH A 46 646 596 HOH HOH . E 5 HOH A 47 647 550 HOH HOH . E 5 HOH A 48 648 614 HOH HOH . E 5 HOH A 49 649 610 HOH HOH . E 5 HOH A 50 650 557 HOH HOH . E 5 HOH A 51 651 565 HOH HOH . E 5 HOH A 52 652 549 HOH HOH . E 5 HOH A 53 653 581 HOH HOH . E 5 HOH A 54 654 551 HOH HOH . E 5 HOH A 55 655 567 HOH HOH . E 5 HOH A 56 656 615 HOH HOH . E 5 HOH A 57 657 522 HOH HOH . E 5 HOH A 58 658 562 HOH HOH . E 5 HOH A 59 659 586 HOH HOH . E 5 HOH A 60 660 516 HOH HOH . E 5 HOH A 61 661 509 HOH HOH . E 5 HOH A 62 662 527 HOH HOH . E 5 HOH A 63 663 582 HOH HOH . E 5 HOH A 64 664 572 HOH HOH . E 5 HOH A 65 665 574 HOH HOH . E 5 HOH A 66 666 588 HOH HOH . E 5 HOH A 67 667 563 HOH HOH . E 5 HOH A 68 668 519 HOH HOH . E 5 HOH A 69 669 548 HOH HOH . E 5 HOH A 70 670 602 HOH HOH . E 5 HOH A 71 671 533 HOH HOH . E 5 HOH A 72 672 506 HOH HOH . E 5 HOH A 73 673 559 HOH HOH . E 5 HOH A 74 674 510 HOH HOH . E 5 HOH A 75 675 555 HOH HOH . E 5 HOH A 76 676 597 HOH HOH . E 5 HOH A 77 677 560 HOH HOH . E 5 HOH A 78 678 536 HOH HOH . E 5 HOH A 79 679 604 HOH HOH . E 5 HOH A 80 680 616 HOH HOH . E 5 HOH A 81 681 612 HOH HOH . E 5 HOH A 82 682 598 HOH HOH . E 5 HOH A 83 683 564 HOH HOH . E 5 HOH A 84 684 584 HOH HOH . E 5 HOH A 85 685 589 HOH HOH . E 5 HOH A 86 686 529 HOH HOH . E 5 HOH A 87 687 580 HOH HOH . E 5 HOH A 88 688 530 HOH HOH . E 5 HOH A 89 689 585 HOH HOH . E 5 HOH A 90 690 569 HOH HOH . E 5 HOH A 91 691 531 HOH HOH . E 5 HOH A 92 692 590 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 -44.528 -45.638 -12.166 0.75 69.78 ? PG ATP 502 A 1 HETATM 2 O O1G ATP . . . C 3 -43.691 -44.383 -12.211 0.2 67.61 ? O1G ATP 502 A 1 HETATM 3 O O2G ATP . . . C 3 -43.697 -46.896 -12.171 0.2 67.62 ? O2G ATP 502 A 1 HETATM 4 O O3G ATP . . . C 3 -45.521 -45.632 -11.035 0.2 68.41 ? O3G ATP 502 A 1 HETATM 5 P PB ATP . . . C 3 -46.94 -45.346 -13.79 1 57.47 ? PB ATP 502 A 1 HETATM 6 O O1B ATP . . . C 3 -47.051 -44.357 -14.901 1 56.08 ? O1B ATP 502 A 1 HETATM 7 O O2B ATP . . . C 3 -47.59 -45.065 -12.478 1 56.59 ? O2B ATP 502 A 1 HETATM 8 O O3B ATP . . . C 3 -45.391 -45.653 -13.53 1 63.25 ? O3B ATP 502 A 1 HETATM 9 P PA ATP . . . C 3 -47.878 -47.22 -15.788 1 55.16 ? PA ATP 502 A 1 HETATM 10 O O1A ATP . . . C 3 -47.042 -46.454 -16.759 1 54.79 ? O1A ATP 502 A 1 HETATM 11 O O2A ATP . . . C 3 -49.365 -47.135 -15.892 1 55.41 ? O2A ATP 502 A 1 HETATM 12 O O3A ATP . . . C 3 -47.449 -46.769 -14.313 1 56.45 ? O3A ATP 502 A 1 HETATM 13 O O5' ATP . . . C 3 -47.435 -48.761 -15.801 1 54.71 ? O5' ATP 502 A 1 HETATM 14 C C5' ATP . . . C 3 -46.059 -49.104 -15.5 1 54.3 ? C5' ATP 502 A 1 HETATM 15 C C4' ATP . . . C 3 -46.028 -49.947 -14.25 1 53.73 ? C4' ATP 502 A 1 HETATM 16 O O4' ATP . . . C 3 -46.593 -51.252 -14.528 1 53.72 ? O4' ATP 502 A 1 HETATM 17 C C3' ATP . . . C 3 -44.648 -50.277 -13.677 1 53.93 ? C3' ATP 502 A 1 HETATM 18 O O3' ATP . . . C 3 -44.116 -49.197 -12.92 1 55.78 ? O3' ATP 502 A 1 HETATM 19 C C2' ATP . . . C 3 -44.979 -51.49 -12.804 1 53.38 ? C2' ATP 502 A 1 HETATM 20 O O2' ATP . . . C 3 -45.47 -51.126 -11.532 1 52.99 ? O2' ATP 502 A 1 HETATM 21 C C1' ATP . . . C 3 -46.059 -52.197 -13.625 1 52.7 ? C1' ATP 502 A 1 HETATM 22 N N9 ATP . . . C 3 -45.536 -53.337 -14.378 1 51.05 ? N9 ATP 502 A 1 HETATM 23 C C8 ATP . . . C 3 -44.363 -53.398 -15.093 1 50.6 ? C8 ATP 502 A 1 HETATM 24 N N7 ATP . . . C 3 -44.164 -54.576 -15.638 1 50.41 ? N7 ATP 502 A 1 HETATM 25 C C5 ATP . . . C 3 -45.264 -55.332 -15.253 1 49.65 ? C5 ATP 502 A 1 HETATM 26 C C6 ATP . . . C 3 -45.639 -56.665 -15.509 1 49.2 ? C6 ATP 502 A 1 HETATM 27 N N6 ATP . . . C 3 -44.912 -57.509 -16.236 1 48.73 ? N6 ATP 502 A 1 HETATM 28 N N1 ATP . . . C 3 -46.803 -57.101 -14.968 1 48.71 ? N1 ATP 502 A 1 HETATM 29 C C2 ATP . . . C 3 -47.526 -56.245 -14.233 1 49.1 ? C2 ATP 502 A 1 HETATM 30 N N3 ATP . . . C 3 -47.273 -54.974 -13.925 1 49.15 ? N3 ATP 502 A 1 HETATM 31 C C4 ATP . . . C 3 -46.114 -54.575 -14.474 1 49.82 ? C4 ATP 502 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #