data_6I81 # _model_server_result.job_id 0gTQYRUGcseJ8zyqGc_8UQ _model_server_result.datetime_utc '2024-11-14 10:34:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6I81 # _exptl.entry_id 6I81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 613.172 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-[4-[2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]ethanoylamino]phenyl]piperidin-4-yl]-trimethyl-azanium' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I81 _cell.length_a 127.297 _cell.length_b 127.297 _cell.length_c 40.594 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H39 Cl N7 O2 1' _chem_comp.formula_weight 613.172 _chem_comp.id H7E _chem_comp.mon_nstd_flag . _chem_comp.name '[1-[4-[2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]ethanoylamino]phenyl]piperidin-4-yl]-trimethyl-azanium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 O2 H7E sing 138 n n O2 C32 H7E sing 139 n n C1 C2 H7E sing 140 n n C31 C32 H7E doub 141 n y C31 C30 H7E sing 142 n y C24 C23 H7E doub 143 n y C24 C25 H7E sing 144 n y C32 C34 H7E sing 145 n y C30 C29 H7E doub 146 n y C23 C22 H7E sing 147 n y CL1 C25 H7E sing 148 n n C34 C28 H7E doub 149 n y C25 C26 H7E doub 150 n y C2 N7 H7E sing 151 n y C2 N1 H7E doub 152 n y C29 C28 H7E sing 153 n y C29 N7 H7E sing 154 n n C28 C21 H7E sing 155 n n N7 C3 H7E sing 156 n y C22 C21 H7E sing 157 n n C22 C27 H7E doub 158 n y N1 N2 H7E sing 159 n y C26 C27 H7E sing 160 n y C21 N6 H7E doub 161 n n C3 N2 H7E doub 162 n y C3 C4 H7E sing 163 n n N6 C4 H7E sing 164 n n C4 C5 H7E sing 165 n n C5 C6 H7E sing 166 n n O1 C6 H7E doub 167 n n C6 N3 H7E sing 168 n n N3 C7 H7E sing 169 n n C7 C8 H7E doub 170 n y C7 C20 H7E sing 171 n y C8 C9 H7E sing 172 n y C20 C19 H7E doub 173 n y C9 C10 H7E doub 174 n y C19 C10 H7E sing 175 n y C10 N4 H7E sing 176 n n C11 N4 H7E sing 177 n n C11 C12 H7E sing 178 n n N4 C18 H7E sing 179 n n C18 C17 H7E sing 180 n n C12 C13 H7E sing 181 n n C13 C17 H7E sing 182 n n C13 N5 H7E sing 183 n n C16 N5 H7E sing 184 n n N5 C15 H7E sing 185 n n N5 C14 H7E sing 186 n n C4 H1 H7E sing 187 n n C14 H2 H7E sing 188 n n C14 H3 H7E sing 189 n n C14 H4 H7E sing 190 n n C5 H5 H7E sing 191 n n C5 H6 H7E sing 192 n n C11 H7 H7E sing 193 n n C11 H8 H7E sing 194 n n C8 H9 H7E sing 195 n n C9 H10 H7E sing 196 n n C12 H11 H7E sing 197 n n C12 H12 H7E sing 198 n n C13 H13 H7E sing 199 n n N3 H14 H7E sing 200 n n C1 H15 H7E sing 201 n n C1 H16 H7E sing 202 n n C1 H17 H7E sing 203 n n C15 H18 H7E sing 204 n n C15 H19 H7E sing 205 n n C15 H20 H7E sing 206 n n C16 H21 H7E sing 207 n n C16 H22 H7E sing 208 n n C16 H23 H7E sing 209 n n C17 H24 H7E sing 210 n n C17 H25 H7E sing 211 n n C18 H26 H7E sing 212 n n C18 H27 H7E sing 213 n n C19 H28 H7E sing 214 n n C20 H29 H7E sing 215 n n C23 H30 H7E sing 216 n n C24 H31 H7E sing 217 n n C26 H32 H7E sing 218 n n C27 H33 H7E sing 219 n n C30 H34 H7E sing 220 n n C31 H35 H7E sing 221 n n C33 H36 H7E sing 222 n n C33 H37 H7E sing 223 n n C33 H38 H7E sing 224 n n C34 H39 H7E sing 225 n n # _atom_sites.entry_id 6I81 _atom_sites.fract_transf_matrix[1][1] 0.007856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 501 1 MES MES . C 3 EDO A 1 502 1 EDO EDO . D 4 H7E A 1 503 1 H7E DRG . E 5 HOH A 1 601 44 HOH HOH . E 5 HOH A 2 602 3 HOH HOH . E 5 HOH A 3 603 123 HOH HOH . E 5 HOH A 4 604 5 HOH HOH . E 5 HOH A 5 605 102 HOH HOH . E 5 HOH A 6 606 36 HOH HOH . E 5 HOH A 7 607 81 HOH HOH . E 5 HOH A 8 608 9 HOH HOH . E 5 HOH A 9 609 32 HOH HOH . E 5 HOH A 10 610 120 HOH HOH . E 5 HOH A 11 611 7 HOH HOH . E 5 HOH A 12 612 15 HOH HOH . E 5 HOH A 13 613 114 HOH HOH . E 5 HOH A 14 614 18 HOH HOH . E 5 HOH A 15 615 110 HOH HOH . E 5 HOH A 16 616 16 HOH HOH . E 5 HOH A 17 617 118 HOH HOH . E 5 HOH A 18 618 98 HOH HOH . E 5 HOH A 19 619 54 HOH HOH . E 5 HOH A 20 620 13 HOH HOH . E 5 HOH A 21 621 2 HOH HOH . E 5 HOH A 22 622 25 HOH HOH . E 5 HOH A 23 623 23 HOH HOH . E 5 HOH A 24 624 79 HOH HOH . E 5 HOH A 25 625 17 HOH HOH . E 5 HOH A 26 626 52 HOH HOH . E 5 HOH A 27 627 82 HOH HOH . E 5 HOH A 28 628 61 HOH HOH . E 5 HOH A 29 629 1 HOH HOH . E 5 HOH A 30 630 24 HOH HOH . E 5 HOH A 31 631 117 HOH HOH . E 5 HOH A 32 632 111 HOH HOH . E 5 HOH A 33 633 116 HOH HOH . E 5 HOH A 34 634 130 HOH HOH . E 5 HOH A 35 635 26 HOH HOH . E 5 HOH A 36 636 29 HOH HOH . E 5 HOH A 37 637 70 HOH HOH . E 5 HOH A 38 638 95 HOH HOH . E 5 HOH A 39 639 93 HOH HOH . E 5 HOH A 40 640 104 HOH HOH . E 5 HOH A 41 641 14 HOH HOH . E 5 HOH A 42 642 38 HOH HOH . E 5 HOH A 43 643 37 HOH HOH . E 5 HOH A 44 644 33 HOH HOH . E 5 HOH A 45 645 12 HOH HOH . E 5 HOH A 46 646 22 HOH HOH . E 5 HOH A 47 647 8 HOH HOH . E 5 HOH A 48 648 28 HOH HOH . E 5 HOH A 49 649 21 HOH HOH . E 5 HOH A 50 650 65 HOH HOH . E 5 HOH A 51 651 43 HOH HOH . E 5 HOH A 52 652 20 HOH HOH . E 5 HOH A 53 653 132 HOH HOH . E 5 HOH A 54 654 10 HOH HOH . E 5 HOH A 55 655 27 HOH HOH . E 5 HOH A 56 656 64 HOH HOH . E 5 HOH A 57 657 84 HOH HOH . E 5 HOH A 58 658 128 HOH HOH . E 5 HOH A 59 659 41 HOH HOH . E 5 HOH A 60 660 6 HOH HOH . E 5 HOH A 61 661 131 HOH HOH . E 5 HOH A 62 662 101 HOH HOH . E 5 HOH A 63 663 99 HOH HOH . E 5 HOH A 64 664 103 HOH HOH . E 5 HOH A 65 665 34 HOH HOH . E 5 HOH A 66 666 113 HOH HOH . E 5 HOH A 67 667 78 HOH HOH . E 5 HOH A 68 668 86 HOH HOH . E 5 HOH A 69 669 83 HOH HOH . E 5 HOH A 70 670 75 HOH HOH . E 5 HOH A 71 671 126 HOH HOH . E 5 HOH A 72 672 42 HOH HOH . E 5 HOH A 73 673 85 HOH HOH . E 5 HOH A 74 674 68 HOH HOH . E 5 HOH A 75 675 67 HOH HOH . E 5 HOH A 76 676 96 HOH HOH . E 5 HOH A 77 677 122 HOH HOH . E 5 HOH A 78 678 19 HOH HOH . E 5 HOH A 79 679 129 HOH HOH . E 5 HOH A 80 680 60 HOH HOH . E 5 HOH A 81 681 112 HOH HOH . E 5 HOH A 82 682 100 HOH HOH . E 5 HOH A 83 683 73 HOH HOH . E 5 HOH A 84 684 133 HOH HOH . E 5 HOH A 85 685 66 HOH HOH . E 5 HOH A 86 686 76 HOH HOH . E 5 HOH A 87 687 119 HOH HOH . E 5 HOH A 88 688 51 HOH HOH . E 5 HOH A 89 689 121 HOH HOH . E 5 HOH A 90 690 125 HOH HOH . E 5 HOH A 91 691 109 HOH HOH . E 5 HOH A 92 692 74 HOH HOH . E 5 HOH A 93 693 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 H7E . . . D 4 -4.528 26.123 30.004 1 17.52 ? C4 H7E 503 A 1 HETATM 2 C C14 H7E . . . D 4 -10.114 31.181 41.661 1 32.14 ? C14 H7E 503 A 1 HETATM 3 C C5 H7E . . . D 4 -4.971 25.582 31.341 1 17.87 ? C5 H7E 503 A 1 HETATM 4 C C6 H7E . . . D 4 -5.42 26.621 32.34 1 21.18 ? C6 H7E 503 A 1 HETATM 5 C C11 H7E . . . D 4 -9.353 30.409 37.367 1 24.83 ? C11 H7E 503 A 1 HETATM 6 C C7 H7E . . . D 4 -7.09 26.992 34.311 1 20.99 ? C7 H7E 503 A 1 HETATM 7 C C8 H7E . . . D 4 -8.297 26.514 34.788 1 20.65 ? C8 H7E 503 A 1 HETATM 8 C C9 H7E . . . D 4 -8.933 27.134 35.849 1 21.95 ? C9 H7E 503 A 1 HETATM 9 C C10 H7E . . . D 4 -8.368 28.261 36.48 1 20.56 ? C10 H7E 503 A 1 HETATM 10 C C12 H7E . . . D 4 -9.601 31.043 38.728 1 22.53 ? C12 H7E 503 A 1 HETATM 11 C C13 H7E . . . D 4 -10.832 30.396 39.394 1 25.59 ? C13 H7E 503 A 1 HETATM 12 N N1 H7E . . . D 4 -4.311 23.003 28.143 1 16.31 ? N1 H7E 503 A 1 HETATM 13 N N2 H7E . . . D 4 -4.576 23.669 29.279 1 17.29 ? N2 H7E 503 A 1 HETATM 14 C C3 H7E . . . D 4 -4.311 24.983 29.081 1 16.66 ? C3 H7E 503 A 1 HETATM 15 N N3 H7E . . . D 4 -6.518 26.227 33.181 1 18.04 ? N3 H7E 503 A 1 HETATM 16 C C1 H7E . . . D 4 -3.472 23.519 25.775 1 16.43 ? C1 H7E 503 A 1 HETATM 17 C C2 H7E . . . D 4 -3.876 23.873 27.2 1 16.35 ? C2 H7E 503 A 1 HETATM 18 N N4 H7E . . . D 4 -8.992 28.955 37.636 1 23.82 ? N4 H7E 503 A 1 HETATM 19 N N5 H7E . . . D 4 -11.211 31.082 40.688 1 31.4 ? N5 H7E 503 A 1 HETATM 20 C C15 H7E . . . D 4 -12.327 30.342 41.31 1 31.4 ? C15 H7E 503 A 1 HETATM 21 C C16 H7E . . . D 4 -11.68 32.453 40.39 1 31.02 ? C16 H7E 503 A 1 HETATM 22 C C17 H7E . . . D 4 -10.556 28.882 39.575 1 25.97 ? C17 H7E 503 A 1 HETATM 23 C C18 H7E . . . D 4 -10.182 28.212 38.249 1 24.68 ? C18 H7E 503 A 1 HETATM 24 C C19 H7E . . . D 4 -7.138 28.711 35.985 1 20.83 ? C19 H7E 503 A 1 HETATM 25 C C20 H7E . . . D 4 -6.497 28.095 34.91 1 20.38 ? C20 H7E 503 A 1 HETATM 26 O O1 H7E . . . D 4 -4.911 27.747 32.317 1 18.89 ? O1 H7E 503 A 1 HETATM 27 N N6 H7E . . . D 4 -5.628 26.906 29.425 1 17.22 ? N6 H7E 503 A 1 HETATM 28 C C21 H7E . . . D 4 -5.504 27.672 28.374 1 17.77 ? C21 H7E 503 A 1 HETATM 29 C C22 H7E . . . D 4 -6.726 28.423 27.858 1 16.99 ? C22 H7E 503 A 1 HETATM 30 C C23 H7E . . . D 4 -7.062 28.505 26.504 1 18.11 ? C23 H7E 503 A 1 HETATM 31 C C24 H7E . . . D 4 -8.253 29.152 26.096 1 18.37 ? C24 H7E 503 A 1 HETATM 32 C C25 H7E . . . D 4 -9.146 29.726 27.008 1 19.78 ? C25 H7E 503 A 1 HETATM 33 CL CL1 H7E . . . D 4 -10.442 30.446 26.517 1 24.55 ? CL1 H7E 503 A 1 HETATM 34 C C26 H7E . . . D 4 -8.809 29.642 28.358 1 19 ? C26 H7E 503 A 1 HETATM 35 C C27 H7E . . . D 4 -7.622 29 28.788 1 18.3 ? C27 H7E 503 A 1 HETATM 36 C C28 H7E . . . D 4 -4.241 27.6 27.515 1 17.33 ? C28 H7E 503 A 1 HETATM 37 C C29 H7E . . . D 4 -3.544 26.406 27.251 1 17.78 ? C29 H7E 503 A 1 HETATM 38 C C30 H7E . . . D 4 -2.392 26.509 26.444 1 16.57 ? C30 H7E 503 A 1 HETATM 39 C C31 H7E . . . D 4 -1.95 27.702 25.895 1 17.35 ? C31 H7E 503 A 1 HETATM 40 C C32 H7E . . . D 4 -2.663 28.882 26.151 1 17.35 ? C32 H7E 503 A 1 HETATM 41 O O2 H7E . . . D 4 -2.283 30.106 25.623 1 18.95 ? O2 H7E 503 A 1 HETATM 42 C C33 H7E . . . D 4 -1.205 30.213 24.672 1 20.91 ? C33 H7E 503 A 1 HETATM 43 C C34 H7E . . . D 4 -3.791 28.811 26.963 1 15.98 ? C34 H7E 503 A 1 HETATM 44 N N7 H7E . . . D 4 -3.921 25.08 27.81 1 16.19 ? N7 H7E 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #