data_6I8L # _model_server_result.job_id 0TcqqTF7aWuqINs1PFciRg _model_server_result.datetime_utc '2024-11-16 00:40:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6I8L # _exptl.entry_id 6I8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I8L _cell.length_a 115.35 _cell.length_b 115.35 _cell.length_c 43.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 316 n n C1 H11 MPD sing 317 n n C1 H12 MPD sing 318 n n C1 H13 MPD sing 319 n n C2 O2 MPD sing 320 n n C2 CM MPD sing 321 n n C2 C3 MPD sing 322 n n O2 HO2 MPD sing 323 n n CM HM1 MPD sing 324 n n CM HM2 MPD sing 325 n n CM HM3 MPD sing 326 n n C3 C4 MPD sing 327 n n C3 H31 MPD sing 328 n n C3 H32 MPD sing 329 n n C4 O4 MPD sing 330 n n C4 C5 MPD sing 331 n n C4 H4 MPD sing 332 n n O4 HO4 MPD sing 333 n n C5 H51 MPD sing 334 n n C5 H52 MPD sing 335 n n C5 H53 MPD sing 336 n n # _atom_sites.entry_id 6I8L _atom_sites.fract_transf_matrix[1][1] 0.008669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD B 1 301 2 MPD MPD . C 3 MRD B 1 302 3 MRD MPD . D 4 DMS B 1 303 1 DMS DMS . E 5 H7Q B 1 304 1 H7Q LIG . F 6 CL B 1 305 1 CL CL . G 7 HOH B 1 401 161 HOH HOH . G 7 HOH B 2 402 158 HOH HOH . G 7 HOH B 3 403 159 HOH HOH . G 7 HOH B 4 404 65 HOH HOH . G 7 HOH B 5 405 100 HOH HOH . G 7 HOH B 6 406 5 HOH HOH . G 7 HOH B 7 407 153 HOH HOH . G 7 HOH B 8 408 57 HOH HOH . G 7 HOH B 9 409 59 HOH HOH . G 7 HOH B 10 410 16 HOH HOH . G 7 HOH B 11 411 85 HOH HOH . G 7 HOH B 12 412 48 HOH HOH . G 7 HOH B 13 413 42 HOH HOH . G 7 HOH B 14 414 1 HOH HOH . G 7 HOH B 15 415 61 HOH HOH . G 7 HOH B 16 416 55 HOH HOH . G 7 HOH B 17 417 28 HOH HOH . G 7 HOH B 18 418 25 HOH HOH . G 7 HOH B 19 419 18 HOH HOH . G 7 HOH B 20 420 32 HOH HOH . G 7 HOH B 21 421 94 HOH HOH . G 7 HOH B 22 422 17 HOH HOH . G 7 HOH B 23 423 47 HOH HOH . G 7 HOH B 24 424 162 HOH HOH . G 7 HOH B 25 425 43 HOH HOH . G 7 HOH B 26 426 79 HOH HOH . G 7 HOH B 27 427 20 HOH HOH . G 7 HOH B 28 428 30 HOH HOH . G 7 HOH B 29 429 15 HOH HOH . G 7 HOH B 30 430 41 HOH HOH . G 7 HOH B 31 431 21 HOH HOH . G 7 HOH B 32 432 14 HOH HOH . G 7 HOH B 33 433 8 HOH HOH . G 7 HOH B 34 434 31 HOH HOH . G 7 HOH B 35 435 98 HOH HOH . G 7 HOH B 36 436 36 HOH HOH . G 7 HOH B 37 437 24 HOH HOH . G 7 HOH B 38 438 3 HOH HOH . G 7 HOH B 39 439 38 HOH HOH . G 7 HOH B 40 440 26 HOH HOH . G 7 HOH B 41 441 164 HOH HOH . G 7 HOH B 42 442 4 HOH HOH . G 7 HOH B 43 443 88 HOH HOH . G 7 HOH B 44 444 39 HOH HOH . G 7 HOH B 45 445 7 HOH HOH . G 7 HOH B 46 446 23 HOH HOH . G 7 HOH B 47 447 75 HOH HOH . G 7 HOH B 48 448 67 HOH HOH . G 7 HOH B 49 449 33 HOH HOH . G 7 HOH B 50 450 152 HOH HOH . G 7 HOH B 51 451 68 HOH HOH . G 7 HOH B 52 452 6 HOH HOH . G 7 HOH B 53 453 93 HOH HOH . G 7 HOH B 54 454 66 HOH HOH . G 7 HOH B 55 455 97 HOH HOH . G 7 HOH B 56 456 2 HOH HOH . G 7 HOH B 57 457 143 HOH HOH . G 7 HOH B 58 458 62 HOH HOH . G 7 HOH B 59 459 46 HOH HOH . G 7 HOH B 60 460 11 HOH HOH . G 7 HOH B 61 461 12 HOH HOH . G 7 HOH B 62 462 19 HOH HOH . G 7 HOH B 63 463 22 HOH HOH . G 7 HOH B 64 464 10 HOH HOH . G 7 HOH B 65 465 69 HOH HOH . G 7 HOH B 66 466 90 HOH HOH . G 7 HOH B 67 467 60 HOH HOH . G 7 HOH B 68 468 96 HOH HOH . G 7 HOH B 69 469 50 HOH HOH . G 7 HOH B 70 470 51 HOH HOH . G 7 HOH B 71 471 49 HOH HOH . G 7 HOH B 72 472 45 HOH HOH . G 7 HOH B 73 473 71 HOH HOH . G 7 HOH B 74 474 29 HOH HOH . G 7 HOH B 75 475 156 HOH HOH . G 7 HOH B 76 476 64 HOH HOH . G 7 HOH B 77 477 27 HOH HOH . G 7 HOH B 78 478 34 HOH HOH . G 7 HOH B 79 479 9 HOH HOH . G 7 HOH B 80 480 92 HOH HOH . G 7 HOH B 81 481 13 HOH HOH . G 7 HOH B 82 482 54 HOH HOH . G 7 HOH B 83 483 52 HOH HOH . G 7 HOH B 84 484 84 HOH HOH . G 7 HOH B 85 485 44 HOH HOH . G 7 HOH B 86 486 157 HOH HOH . G 7 HOH B 87 487 115 HOH HOH . G 7 HOH B 88 488 163 HOH HOH . G 7 HOH B 89 489 40 HOH HOH . G 7 HOH B 90 490 35 HOH HOH . G 7 HOH B 91 491 73 HOH HOH . G 7 HOH B 92 492 99 HOH HOH . G 7 HOH B 93 493 77 HOH HOH . G 7 HOH B 94 494 56 HOH HOH . G 7 HOH B 95 495 37 HOH HOH . G 7 HOH B 96 496 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 -15.363 -24.732 4.213 1 57.74 ? C1 MPD 301 B 1 HETATM 2 C C2 MPD . . . B 2 -15.005 -23.403 3.518 1 59.01 ? C2 MPD 301 B 1 HETATM 3 O O2 MPD . . . B 2 -16.207 -22.579 3.463 1 50.67 ? O2 MPD 301 B 1 HETATM 4 C CM MPD . . . B 2 -13.892 -22.691 4.269 1 56.38 ? CM MPD 301 B 1 HETATM 5 C C3 MPD . . . B 2 -14.457 -23.563 2.102 1 62.78 ? C3 MPD 301 B 1 HETATM 6 C C4 MPD . . . B 2 -15.409 -24.288 1.159 1 65.99 ? C4 MPD 301 B 1 HETATM 7 O O4 MPD . . . B 2 -16.583 -23.533 0.988 1 64.74 ? O4 MPD 301 B 1 HETATM 8 C C5 MPD . . . B 2 -14.706 -24.511 -0.176 1 63.41 ? C5 MPD 301 B 1 HETATM 9 H H11 MPD . . . B 2 -15.15 -25.563 3.54 1 69.28 ? H11 MPD 301 B 1 HETATM 10 H H12 MPD . . . B 2 -16.422 -24.734 4.469 1 69.28 ? H12 MPD 301 B 1 HETATM 11 H H13 MPD . . . B 2 -14.769 -24.839 5.12 1 69.28 ? H13 MPD 301 B 1 HETATM 12 H HO2 MPD . . . B 2 -16.383 -22.32 2.534 1 60.8 ? HO2 MPD 301 B 1 HETATM 13 H HM1 MPD . . . B 2 -13.056 -22.51 3.594 1 67.65 ? HM1 MPD 301 B 1 HETATM 14 H HM2 MPD . . . B 2 -13.56 -23.313 5.101 1 67.65 ? HM2 MPD 301 B 1 HETATM 15 H HM3 MPD . . . B 2 -14.262 -21.74 4.652 1 67.65 ? HM3 MPD 301 B 1 HETATM 16 H H31 MPD . . . B 2 -14.239 -22.576 1.695 1 75.34 ? H31 MPD 301 B 1 HETATM 17 H H32 MPD . . . B 2 -13.517 -24.113 2.147 1 75.34 ? H32 MPD 301 B 1 HETATM 18 H H4 MPD . . . B 2 -15.654 -25.259 1.59 1 79.19 ? H4 MPD 301 B 1 HETATM 19 H HO4 MPD . . . B 2 -16.357 -22.661 0.602 1 77.69 ? HO4 MPD 301 B 1 HETATM 20 H H51 MPD . . . B 2 -15.276 -24.03 -0.971 1 76.1 ? H51 MPD 301 B 1 HETATM 21 H H52 MPD . . . B 2 -14.634 -25.58 -0.375 1 76.1 ? H52 MPD 301 B 1 HETATM 22 H H53 MPD . . . B 2 -13.705 -24.081 -0.136 1 76.1 ? H53 MPD 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 22 #