data_6I8L # _model_server_result.job_id I383VdlzjaaVZuF-gXeizg _model_server_result.datetime_utc '2024-11-16 00:45:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6I8L # _exptl.entry_id 6I8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.57 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-(cyclopropylmethoxy)-6'-[3-(1,3-dihydroisoindol-2-yl)propoxy]spiro[cyclopentane-1,3'-indole]-2'-amine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I8L _cell.length_a 115.35 _cell.length_b 115.35 _cell.length_c 43.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N3 O2' _chem_comp.formula_weight 431.57 _chem_comp.id H7Q _chem_comp.mon_nstd_flag . _chem_comp.name "5'-(cyclopropylmethoxy)-6'-[3-(1,3-dihydroisoindol-2-yl)propoxy]spiro[cyclopentane-1,3'-indole]-2'-amine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 H7Q sing 138 n n C2 C3 H7Q sing 139 n n N C5 H7Q sing 140 n n C5 N1 H7Q doub 141 n n C5 C3 H7Q sing 142 n n N1 C6 H7Q sing 143 n n C1 C H7Q sing 144 n n C6 C7 H7Q doub 145 n y C6 C11 H7Q sing 146 n y C3 C11 H7Q sing 147 n n C3 C4 H7Q sing 148 n n C14 C13 H7Q sing 149 n n C14 C15 H7Q sing 150 n n C7 C8 H7Q sing 151 n y C11 C10 H7Q doub 152 n y C13 C15 H7Q sing 153 n n C13 C12 H7Q sing 154 n n C8 O1 H7Q sing 155 n n C8 C9 H7Q doub 156 n y C10 C9 H7Q sing 157 n y C C4 H7Q sing 158 n n O1 C16 H7Q sing 159 n n C9 O H7Q sing 160 n n C16 C17 H7Q sing 161 n n O C12 H7Q sing 162 n n C17 C18 H7Q sing 163 n n C24 C25 H7Q doub 164 n y C24 C23 H7Q sing 165 n y C26 C25 H7Q sing 166 n n C26 N2 H7Q sing 167 n n C25 C20 H7Q sing 168 n y C23 C22 H7Q doub 169 n y N2 C18 H7Q sing 170 n n N2 C19 H7Q sing 171 n n C20 C19 H7Q sing 172 n n C20 C21 H7Q doub 173 n y C22 C21 H7Q sing 174 n y C4 H6 H7Q sing 175 n n C4 H7 H7Q sing 176 n n C7 H10 H7Q sing 177 n n C10 H11 H7Q sing 178 n n C13 H14 H7Q sing 179 n n C15 H17 H7Q sing 180 n n C15 H18 H7Q sing 181 n n C17 H22 H7Q sing 182 n n C17 H21 H7Q sing 183 n n C21 H27 H7Q sing 184 n n C22 H28 H7Q sing 185 n n C24 H30 H7Q sing 186 n n C26 H32 H7Q sing 187 n n C26 H31 H7Q sing 188 n n N H9 H7Q sing 189 n n N H8 H7Q sing 190 n n C H1 H7Q sing 191 n n C H H7Q sing 192 n n C1 H3 H7Q sing 193 n n C1 H2 H7Q sing 194 n n C12 H13 H7Q sing 195 n n C12 H12 H7Q sing 196 n n C14 H16 H7Q sing 197 n n C14 H15 H7Q sing 198 n n C16 H19 H7Q sing 199 n n C16 H20 H7Q sing 200 n n C18 H24 H7Q sing 201 n n C18 H23 H7Q sing 202 n n C19 H25 H7Q sing 203 n n C19 H26 H7Q sing 204 n n C2 H4 H7Q sing 205 n n C2 H5 H7Q sing 206 n n C23 H29 H7Q sing 207 n n # _atom_sites.entry_id 6I8L _atom_sites.fract_transf_matrix[1][1] 0.008669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD B 1 301 2 MPD MPD . C 3 MRD B 1 302 3 MRD MPD . D 4 DMS B 1 303 1 DMS DMS . E 5 H7Q B 1 304 1 H7Q LIG . F 6 CL B 1 305 1 CL CL . G 7 HOH B 1 401 161 HOH HOH . G 7 HOH B 2 402 158 HOH HOH . G 7 HOH B 3 403 159 HOH HOH . G 7 HOH B 4 404 65 HOH HOH . G 7 HOH B 5 405 100 HOH HOH . G 7 HOH B 6 406 5 HOH HOH . G 7 HOH B 7 407 153 HOH HOH . G 7 HOH B 8 408 57 HOH HOH . G 7 HOH B 9 409 59 HOH HOH . G 7 HOH B 10 410 16 HOH HOH . G 7 HOH B 11 411 85 HOH HOH . G 7 HOH B 12 412 48 HOH HOH . G 7 HOH B 13 413 42 HOH HOH . G 7 HOH B 14 414 1 HOH HOH . G 7 HOH B 15 415 61 HOH HOH . G 7 HOH B 16 416 55 HOH HOH . G 7 HOH B 17 417 28 HOH HOH . G 7 HOH B 18 418 25 HOH HOH . G 7 HOH B 19 419 18 HOH HOH . G 7 HOH B 20 420 32 HOH HOH . G 7 HOH B 21 421 94 HOH HOH . G 7 HOH B 22 422 17 HOH HOH . G 7 HOH B 23 423 47 HOH HOH . G 7 HOH B 24 424 162 HOH HOH . G 7 HOH B 25 425 43 HOH HOH . G 7 HOH B 26 426 79 HOH HOH . G 7 HOH B 27 427 20 HOH HOH . G 7 HOH B 28 428 30 HOH HOH . G 7 HOH B 29 429 15 HOH HOH . G 7 HOH B 30 430 41 HOH HOH . G 7 HOH B 31 431 21 HOH HOH . G 7 HOH B 32 432 14 HOH HOH . G 7 HOH B 33 433 8 HOH HOH . G 7 HOH B 34 434 31 HOH HOH . G 7 HOH B 35 435 98 HOH HOH . G 7 HOH B 36 436 36 HOH HOH . G 7 HOH B 37 437 24 HOH HOH . G 7 HOH B 38 438 3 HOH HOH . G 7 HOH B 39 439 38 HOH HOH . G 7 HOH B 40 440 26 HOH HOH . G 7 HOH B 41 441 164 HOH HOH . G 7 HOH B 42 442 4 HOH HOH . G 7 HOH B 43 443 88 HOH HOH . G 7 HOH B 44 444 39 HOH HOH . G 7 HOH B 45 445 7 HOH HOH . G 7 HOH B 46 446 23 HOH HOH . G 7 HOH B 47 447 75 HOH HOH . G 7 HOH B 48 448 67 HOH HOH . G 7 HOH B 49 449 33 HOH HOH . G 7 HOH B 50 450 152 HOH HOH . G 7 HOH B 51 451 68 HOH HOH . G 7 HOH B 52 452 6 HOH HOH . G 7 HOH B 53 453 93 HOH HOH . G 7 HOH B 54 454 66 HOH HOH . G 7 HOH B 55 455 97 HOH HOH . G 7 HOH B 56 456 2 HOH HOH . G 7 HOH B 57 457 143 HOH HOH . G 7 HOH B 58 458 62 HOH HOH . G 7 HOH B 59 459 46 HOH HOH . G 7 HOH B 60 460 11 HOH HOH . G 7 HOH B 61 461 12 HOH HOH . G 7 HOH B 62 462 19 HOH HOH . G 7 HOH B 63 463 22 HOH HOH . G 7 HOH B 64 464 10 HOH HOH . G 7 HOH B 65 465 69 HOH HOH . G 7 HOH B 66 466 90 HOH HOH . G 7 HOH B 67 467 60 HOH HOH . G 7 HOH B 68 468 96 HOH HOH . G 7 HOH B 69 469 50 HOH HOH . G 7 HOH B 70 470 51 HOH HOH . G 7 HOH B 71 471 49 HOH HOH . G 7 HOH B 72 472 45 HOH HOH . G 7 HOH B 73 473 71 HOH HOH . G 7 HOH B 74 474 29 HOH HOH . G 7 HOH B 75 475 156 HOH HOH . G 7 HOH B 76 476 64 HOH HOH . G 7 HOH B 77 477 27 HOH HOH . G 7 HOH B 78 478 34 HOH HOH . G 7 HOH B 79 479 9 HOH HOH . G 7 HOH B 80 480 92 HOH HOH . G 7 HOH B 81 481 13 HOH HOH . G 7 HOH B 82 482 54 HOH HOH . G 7 HOH B 83 483 52 HOH HOH . G 7 HOH B 84 484 84 HOH HOH . G 7 HOH B 85 485 44 HOH HOH . G 7 HOH B 86 486 157 HOH HOH . G 7 HOH B 87 487 115 HOH HOH . G 7 HOH B 88 488 163 HOH HOH . G 7 HOH B 89 489 40 HOH HOH . G 7 HOH B 90 490 35 HOH HOH . G 7 HOH B 91 491 73 HOH HOH . G 7 HOH B 92 492 99 HOH HOH . G 7 HOH B 93 493 77 HOH HOH . G 7 HOH B 94 494 56 HOH HOH . G 7 HOH B 95 495 37 HOH HOH . G 7 HOH B 96 496 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H7Q . . . E 5 -6.2 -36.195 -7.624 1 23.28 ? N1 H7Q 304 B 1 HETATM 2 C C4 H7Q . . . E 5 -5.588 -39.205 -5.866 1 29.17 ? C4 H7Q 304 B 1 HETATM 3 C C5 H7Q . . . E 5 -5.471 -37.294 -7.626 1 26.41 ? C5 H7Q 304 B 1 HETATM 4 C C6 H7Q . . . E 5 -7.467 -36.6 -7.195 1 22.66 ? C6 H7Q 304 B 1 HETATM 5 C C7 H7Q . . . E 5 -8.564 -35.775 -6.973 1 20.1 ? C7 H7Q 304 B 1 HETATM 6 C C8 H7Q . . . E 5 -9.728 -36.338 -6.505 1 19.8 ? C8 H7Q 304 B 1 HETATM 7 C C10 H7Q . . . E 5 -8.68 -38.545 -6.421 1 20.77 ? C10 H7Q 304 B 1 HETATM 8 C C13 H7Q . . . E 5 -11.852 -40.262 -6.636 1 51.22 ? C13 H7Q 304 B 1 HETATM 9 C C15 H7Q . . . E 5 -12.958 -41.193 -6.32 1 44.79 ? C15 H7Q 304 B 1 HETATM 10 C C17 H7Q . . . E 5 -11.949 -33.773 -5.359 1 20.3 ? C17 H7Q 304 B 1 HETATM 11 C C20 H7Q . . . E 5 -14.178 -37.588 -3.472 1 24.12 ? C20 H7Q 304 B 1 HETATM 12 C C21 H7Q . . . E 5 -14.704 -38.689 -2.81 1 28.49 ? C21 H7Q 304 B 1 HETATM 13 C C22 H7Q . . . E 5 -15.788 -39.366 -3.339 1 38.16 ? C22 H7Q 304 B 1 HETATM 14 C C24 H7Q . . . E 5 -15.82 -37.858 -5.203 1 28.7 ? C24 H7Q 304 B 1 HETATM 15 C C26 H7Q . . . E 5 -14.006 -35.977 -5.192 1 21.95 ? C26 H7Q 304 B 1 HETATM 16 N N H7Q . . . E 5 -4.202 -37.326 -8.047 1 27.66 ? N H7Q 304 B 1 HETATM 17 C C H7Q . . . E 5 -5.179 -40.614 -6.279 1 52.23 ? C H7Q 304 B 1 HETATM 18 O O H7Q . . . E 5 -11.001 -38.162 -5.796 1 25.39 ? O H7Q 304 B 1 HETATM 19 C C1 H7Q . . . E 5 -6.001 -40.99 -7.387 1 61.87 ? C1 H7Q 304 B 1 HETATM 20 C C11 H7Q . . . E 5 -7.533 -37.971 -6.943 1 21.62 ? C11 H7Q 304 B 1 HETATM 21 C C12 H7Q . . . E 5 -11.181 -39.559 -5.489 1 27.78 ? C12 H7Q 304 B 1 HETATM 22 C C14 H7Q . . . E 5 -13.235 -39.904 -6.996 1 36.05 ? C14 H7Q 304 B 1 HETATM 23 C C16 H7Q . . . E 5 -10.691 -34.214 -6.056 1 20.75 ? C16 H7Q 304 B 1 HETATM 24 C C18 H7Q . . . E 5 -12.299 -34.607 -4.125 1 19.53 ? C18 H7Q 304 B 1 HETATM 25 C C19 H7Q . . . E 5 -13.023 -36.71 -3.101 1 22.82 ? C19 H7Q 304 B 1 HETATM 26 C C2 H7Q . . . E 5 -6.177 -39.725 -8.184 1 30.92 ? C2 H7Q 304 B 1 HETATM 27 C C23 H7Q . . . E 5 -16.345 -38.955 -4.529 1 33.52 ? C23 H7Q 304 B 1 HETATM 28 C C25 H7Q . . . E 5 -14.732 -37.176 -4.676 1 24.19 ? C25 H7Q 304 B 1 HETATM 29 C C3 H7Q . . . E 5 -6.159 -38.54 -7.154 1 24.03 ? C3 H7Q 304 B 1 HETATM 30 C C9 H7Q . . . E 5 -9.792 -37.719 -6.201 1 21.18 ? C9 H7Q 304 B 1 HETATM 31 N N2 H7Q . . . E 5 -12.725 -35.988 -4.37 1 22.79 ? N2 H7Q 304 B 1 HETATM 32 O O1 H7Q . . . E 5 -10.869 -35.623 -6.258 1 22.41 ? O1 H7Q 304 B 1 HETATM 33 H H6 H7Q . . . E 5 -6.309 -39.198 -5.05 1 35.01 ? H6 H7Q 304 B 1 HETATM 34 H H7 H7Q . . . E 5 -4.733 -38.642 -5.494 1 35.01 ? H7 H7Q 304 B 1 HETATM 35 H H10 H7Q . . . E 5 -8.502 -34.705 -7.167 1 24.13 ? H10 H7Q 304 B 1 HETATM 36 H H11 H7Q . . . E 5 -8.711 -39.608 -6.19 1 24.92 ? H11 H7Q 304 B 1 HETATM 37 H H14 H7Q . . . E 5 -11.146 -40.532 -7.42 1 61.46 ? H14 H7Q 304 B 1 HETATM 38 H H17 H7Q . . . E 5 -13.054 -42.134 -6.86 1 53.74 ? H17 H7Q 304 B 1 HETATM 39 H H18 H7Q . . . E 5 -13.265 -41.355 -5.288 1 53.74 ? H18 H7Q 304 B 1 HETATM 40 H H22 H7Q . . . E 5 -12.777 -33.783 -6.066 1 24.36 ? H22 H7Q 304 B 1 HETATM 41 H H21 H7Q . . . E 5 -11.868 -32.726 -5.073 1 24.36 ? H21 H7Q 304 B 1 HETATM 42 H H27 H7Q . . . E 5 -14.256 -39.013 -1.873 1 34.19 ? H27 H7Q 304 B 1 HETATM 43 H H28 H7Q . . . E 5 -16.198 -40.225 -2.809 1 45.8 ? H28 H7Q 304 B 1 HETATM 44 H H30 H7Q . . . E 5 -16.256 -37.527 -6.145 1 34.43 ? H30 H7Q 304 B 1 HETATM 45 H H32 H7Q . . . E 5 -14.625 -35.085 -5.106 1 26.34 ? H32 H7Q 304 B 1 HETATM 46 H H31 H7Q . . . E 5 -13.73 -36.065 -6.241 1 26.34 ? H31 H7Q 304 B 1 HETATM 47 H H9 H7Q . . . E 5 -3.727 -36.488 -8.369 1 33.19 ? H9 H7Q 304 B 1 HETATM 48 H H8 H7Q . . . E 5 -3.679 -38.196 -8.056 1 33.19 ? H8 H7Q 304 B 1 HETATM 49 H H1 H7Q . . . E 5 -4.123 -40.649 -6.542 1 62.68 ? H1 H7Q 304 B 1 HETATM 50 H H H7Q . . . E 5 -5.262 -41.311 -5.446 1 62.68 ? H H7Q 304 B 1 HETATM 51 H H3 H7Q . . . E 5 -5.534 -41.771 -7.985 1 74.25 ? H3 H7Q 304 B 1 HETATM 52 H H2 H7Q . . . E 5 -6.952 -41.419 -7.073 1 74.25 ? H2 H7Q 304 B 1 HETATM 53 H H13 H7Q . . . E 5 -10.214 -40.018 -5.288 1 33.33 ? H13 H7Q 304 B 1 HETATM 54 H H12 H7Q . . . E 5 -11.753 -39.666 -4.568 1 33.33 ? H12 H7Q 304 B 1 HETATM 55 H H16 H7Q . . . E 5 -13.536 -39.885 -8.042 1 43.26 ? H16 H7Q 304 B 1 HETATM 56 H H15 H7Q . . . E 5 -13.761 -39.106 -6.474 1 43.26 ? H15 H7Q 304 B 1 HETATM 57 H H19 H7Q . . . E 5 -10.592 -33.837 -7.073 1 24.9 ? H19 H7Q 304 B 1 HETATM 58 H H20 H7Q . . . E 5 -9.785 -33.968 -5.505 1 24.9 ? H20 H7Q 304 B 1 HETATM 59 H H24 H7Q . . . E 5 -13.121 -34.113 -3.608 1 23.43 ? H24 H7Q 304 B 1 HETATM 60 H H23 H7Q . . . E 5 -11.471 -34.543 -3.421 1 23.43 ? H23 H7Q 304 B 1 HETATM 61 H H25 H7Q . . . E 5 -13.268 -36.082 -2.246 1 27.39 ? H25 H7Q 304 B 1 HETATM 62 H H26 H7Q . . . E 5 -12.134 -37.277 -2.829 1 27.39 ? H26 H7Q 304 B 1 HETATM 63 H H4 H7Q . . . E 5 -7.11 -39.728 -8.746 1 37.11 ? H4 H7Q 304 B 1 HETATM 64 H H5 H7Q . . . E 5 -5.399 -39.606 -8.937 1 37.11 ? H5 H7Q 304 B 1 HETATM 65 H H29 H7Q . . . E 5 -17.198 -39.487 -4.947 1 40.22 ? H29 H7Q 304 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 65 #