data_6I8V # _model_server_result.job_id Bh38uqljzYy-kqeegvC0sw _model_server_result.datetime_utc '2024-10-20 00:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6I8V # _exptl.entry_id 6I8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I8V _cell.length_a 84.155 _cell.length_b 84.155 _cell.length_c 83.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 104 A TYR 104 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc2 A OH TYR 104 A TYR 104 1_555 D CA CA . A CA 303 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc3 A OE2 GLU 121 A GLU 121 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A OE2 GLU 121 A GLU 121 1_555 C CA CA . A CA 302 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 B O3G ATP . A ATP 301 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 B O3G ATP . A ATP 301 1_555 C CA CA . A CA 302 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 C CA CA . A CA 302 1_555 G O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc8 C CA CA . A CA 302 1_555 G O HOH . A HOH 458 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6I8V _atom_sites.fract_transf_matrix[1][1] 0.011883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 301 1 ATP ATP . C 3 CA A 1 302 2 CA CA . D 3 CA A 1 303 3 CA CA . E 4 BU1 A 1 304 1 BU1 BU1 . F 4 BU1 A 1 305 2 BU1 BU1 . G 5 HOH A 1 401 18 HOH HOH . G 5 HOH A 2 402 30 HOH HOH . G 5 HOH A 3 403 19 HOH HOH . G 5 HOH A 4 404 57 HOH HOH . G 5 HOH A 5 405 3 HOH HOH . G 5 HOH A 6 406 32 HOH HOH . G 5 HOH A 7 407 48 HOH HOH . G 5 HOH A 8 408 52 HOH HOH . G 5 HOH A 9 409 10 HOH HOH . G 5 HOH A 10 410 72 HOH HOH . G 5 HOH A 11 411 11 HOH HOH . G 5 HOH A 12 412 39 HOH HOH . G 5 HOH A 13 413 40 HOH HOH . G 5 HOH A 14 414 62 HOH HOH . G 5 HOH A 15 415 46 HOH HOH . G 5 HOH A 16 416 45 HOH HOH . G 5 HOH A 17 417 36 HOH HOH . G 5 HOH A 18 418 37 HOH HOH . G 5 HOH A 19 419 6 HOH HOH . G 5 HOH A 20 420 34 HOH HOH . G 5 HOH A 21 421 56 HOH HOH . G 5 HOH A 22 422 67 HOH HOH . G 5 HOH A 23 423 8 HOH HOH . G 5 HOH A 24 424 15 HOH HOH . G 5 HOH A 25 425 35 HOH HOH . G 5 HOH A 26 426 7 HOH HOH . G 5 HOH A 27 427 28 HOH HOH . G 5 HOH A 28 428 23 HOH HOH . G 5 HOH A 29 429 73 HOH HOH . G 5 HOH A 30 430 59 HOH HOH . G 5 HOH A 31 431 51 HOH HOH . G 5 HOH A 32 432 41 HOH HOH . G 5 HOH A 33 433 4 HOH HOH . G 5 HOH A 34 434 74 HOH HOH . G 5 HOH A 35 435 16 HOH HOH . G 5 HOH A 36 436 63 HOH HOH . G 5 HOH A 37 437 1 HOH HOH . G 5 HOH A 38 438 2 HOH HOH . G 5 HOH A 39 439 38 HOH HOH . G 5 HOH A 40 440 49 HOH HOH . G 5 HOH A 41 441 26 HOH HOH . G 5 HOH A 42 442 29 HOH HOH . G 5 HOH A 43 443 14 HOH HOH . G 5 HOH A 44 444 66 HOH HOH . G 5 HOH A 45 445 53 HOH HOH . G 5 HOH A 46 446 44 HOH HOH . G 5 HOH A 47 447 61 HOH HOH . G 5 HOH A 48 448 22 HOH HOH . G 5 HOH A 49 449 75 HOH HOH . G 5 HOH A 50 450 20 HOH HOH . G 5 HOH A 51 451 42 HOH HOH . G 5 HOH A 52 452 12 HOH HOH . G 5 HOH A 53 453 43 HOH HOH . G 5 HOH A 54 454 31 HOH HOH . G 5 HOH A 55 455 25 HOH HOH . G 5 HOH A 56 456 9 HOH HOH . G 5 HOH A 57 457 13 HOH HOH . G 5 HOH A 58 458 17 HOH HOH . G 5 HOH A 59 459 71 HOH HOH . G 5 HOH A 60 460 47 HOH HOH . G 5 HOH A 61 461 58 HOH HOH . G 5 HOH A 62 462 5 HOH HOH . G 5 HOH A 63 463 33 HOH HOH . G 5 HOH A 64 464 21 HOH HOH . G 5 HOH A 65 465 27 HOH HOH . G 5 HOH A 66 466 70 HOH HOH . G 5 HOH A 67 467 76 HOH HOH . G 5 HOH A 68 468 64 HOH HOH . G 5 HOH A 69 469 65 HOH HOH . G 5 HOH A 70 470 60 HOH HOH . G 5 HOH A 71 471 54 HOH HOH . G 5 HOH A 72 472 24 HOH HOH . G 5 HOH A 73 473 77 HOH HOH . G 5 HOH A 74 474 55 HOH HOH . G 5 HOH A 75 475 68 HOH HOH . G 5 HOH A 76 476 50 HOH HOH . G 5 HOH A 77 477 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -2.465 -20.426 -2.478 1 32.14 ? PG ATP 301 A 1 HETATM 2 O O1G ATP . . . B 2 -1.426 -19.715 -3.313 1 39.94 ? O1G ATP 301 A 1 HETATM 3 O O2G ATP . . . B 2 -3.394 -21.329 -3.26 1 34.07 ? O2G ATP 301 A 1 HETATM 4 O O3G ATP . . . B 2 -1.933 -20.995 -1.193 1 30.8 ? O3G ATP 301 A 1 HETATM 5 P PB ATP . . . B 2 -3.34 -18.314 -0.822 1 43.86 ? PB ATP 301 A 1 HETATM 6 O O1B ATP . . . B 2 -2.066 -17.51 -0.911 1 45.7 ? O1B ATP 301 A 1 HETATM 7 O O2B ATP . . . B 2 -3.632 -19.148 0.401 1 47.77 ? O2B ATP 301 A 1 HETATM 8 O O3B ATP . . . B 2 -3.485 -19.256 -2.104 1 31.66 ? O3B ATP 301 A 1 HETATM 9 P PA ATP . . . B 2 -4.632 -15.915 -1.714 1 41.6 ? PA ATP 301 A 1 HETATM 10 O O1A ATP . . . B 2 -3.52 -15.863 -2.726 1 34.89 ? O1A ATP 301 A 1 HETATM 11 O O2A ATP . . . B 2 -4.701 -14.889 -0.597 1 48.19 ? O2A ATP 301 A 1 HETATM 12 O O3A ATP . . . B 2 -4.632 -17.403 -1.11 1 50.3 ? O3A ATP 301 A 1 HETATM 13 O O5' ATP . . . B 2 -6.04 -15.98 -2.497 1 37.45 ? O5' ATP 301 A 1 HETATM 14 C C5' ATP . . . B 2 -6.11 -16.825 -3.648 1 28.95 ? C5' ATP 301 A 1 HETATM 15 C C4' ATP . . . B 2 -6.891 -16.139 -4.758 1 25.22 ? C4' ATP 301 A 1 HETATM 16 O O4' ATP . . . B 2 -8.218 -15.853 -4.304 1 24.33 ? O4' ATP 301 A 1 HETATM 17 C C3' ATP . . . B 2 -6.28 -14.807 -5.173 1 25.32 ? C3' ATP 301 A 1 HETATM 18 O O3' ATP . . . B 2 -5.962 -14.869 -6.567 1 25.64 ? O3' ATP 301 A 1 HETATM 19 C C2' ATP . . . B 2 -7.387 -13.792 -4.966 1 28.31 ? C2' ATP 301 A 1 HETATM 20 O O2' ATP . . . B 2 -7.442 -12.809 -6 1 24.35 ? O2' ATP 301 A 1 HETATM 21 C C1' ATP . . . B 2 -8.629 -14.666 -4.968 1 26.98 ? C1' ATP 301 A 1 HETATM 22 N N9 ATP . . . B 2 -9.755 -14.042 -4.249 1 24.55 ? N9 ATP 301 A 1 HETATM 23 C C8 ATP . . . B 2 -9.712 -13.436 -3.038 1 25.08 ? C8 ATP 301 A 1 HETATM 24 N N7 ATP . . . B 2 -10.935 -12.972 -2.696 1 28.31 ? N7 ATP 301 A 1 HETATM 25 C C5 ATP . . . B 2 -11.777 -13.292 -3.69 1 24.5 ? C5 ATP 301 A 1 HETATM 26 C C6 ATP . . . B 2 -13.208 -13.108 -3.97 1 27.3 ? C6 ATP 301 A 1 HETATM 27 N N6 ATP . . . B 2 -13.994 -12.473 -3.087 1 23.17 ? N6 ATP 301 A 1 HETATM 28 N N1 ATP . . . B 2 -13.699 -13.581 -5.138 1 24.26 ? N1 ATP 301 A 1 HETATM 29 C C2 ATP . . . B 2 -12.923 -14.22 -6.016 1 20.7 ? C2 ATP 301 A 1 HETATM 30 N N3 ATP . . . B 2 -11.61 -14.428 -5.833 1 21.23 ? N3 ATP 301 A 1 HETATM 31 C C4 ATP . . . B 2 -10.996 -13.988 -4.715 1 23.12 ? C4 ATP 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #