data_6I8W # _model_server_result.job_id 0L2lUyogSs24pgyIJIU_EA _model_server_result.datetime_utc '2024-10-19 00:56:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6I8W # _exptl.entry_id 6I8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.291 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNDECANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I8W _cell.length_a 133.871 _cell.length_b 133.871 _cell.length_c 212.358 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C FME 1 B FME 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C11 H22 O2' _chem_comp.formula_weight 186.291 _chem_comp.id 11A _chem_comp.mon_nstd_flag . _chem_comp.name 'UNDECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAD 11A sing 1 n n CAA HAA1 11A sing 2 n n CAA HAA2 11A sing 3 n n CAA HAA3 11A sing 4 n n CAD CAE 11A sing 5 n n CAD HAD1 11A sing 6 n n CAD HAD2 11A sing 7 n n CAE CAF 11A sing 8 n n CAE HAE1 11A sing 9 n n CAE HAE2 11A sing 10 n n CAF CAG 11A sing 11 n n CAF HAF1 11A sing 12 n n CAF HAF2 11A sing 13 n n CAG CAH 11A sing 14 n n CAG HAG1 11A sing 15 n n CAG HAG2 11A sing 16 n n CAH CAI 11A sing 17 n n CAH HAH1 11A sing 18 n n CAH HAH2 11A sing 19 n n CAI CAJ 11A sing 20 n n CAI HAI1 11A sing 21 n n CAI HAI2 11A sing 22 n n CAJ CAK 11A sing 23 n n CAJ HAJ1 11A sing 24 n n CAJ HAJ2 11A sing 25 n n CAK CAL 11A sing 26 n n CAK HAK1 11A sing 27 n n CAK HAK2 11A sing 28 n n CAL CAM 11A sing 29 n n CAL HAL1 11A sing 30 n n CAL HAL2 11A sing 31 n n CAM OAC 11A sing 32 n n CAM OAB 11A doub 33 n n OAC HAC 11A sing 34 n n # _atom_sites.entry_id 6I8W _atom_sites.fract_transf_matrix[1][1] 0.00747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MYR A 1 401 500 MYR MYR . D 3 BOG A 1 402 502 BOG BOG . E 4 IPA A 1 403 503 IPA IPA . F 5 CO2 A 1 404 504 CO2 CO2 . G 5 CO2 A 1 405 505 CO2 CO2 . H 5 CO2 A 1 406 506 CO2 CO2 . I 6 11A B 1 501 501 11A 11A . J 3 BOG B 1 502 502 BOG BOG . K 4 IPA B 1 503 503 IPA IPA . L 4 IPA B 1 504 504 IPA IPA . M 5 CO2 B 1 505 505 CO2 CO2 . N 5 CO2 B 1 506 506 CO2 CO2 . O 7 HOH A 1 501 20 HOH HOH . O 7 HOH A 2 502 188 HOH HOH . O 7 HOH A 3 503 189 HOH HOH . O 7 HOH A 4 504 229 HOH HOH . O 7 HOH A 5 505 190 HOH HOH . O 7 HOH A 6 506 155 HOH HOH . O 7 HOH A 7 507 3 HOH HOH . O 7 HOH A 8 508 194 HOH HOH . O 7 HOH A 9 509 87 HOH HOH . O 7 HOH A 10 510 115 HOH HOH . O 7 HOH A 11 511 93 HOH HOH . O 7 HOH A 12 512 164 HOH HOH . O 7 HOH A 13 513 85 HOH HOH . O 7 HOH A 14 514 123 HOH HOH . O 7 HOH A 15 515 106 HOH HOH . O 7 HOH A 16 516 16 HOH HOH . O 7 HOH A 17 517 187 HOH HOH . O 7 HOH A 18 518 63 HOH HOH . O 7 HOH A 19 519 170 HOH HOH . O 7 HOH A 20 520 154 HOH HOH . O 7 HOH A 21 521 135 HOH HOH . O 7 HOH A 22 522 165 HOH HOH . O 7 HOH A 23 523 156 HOH HOH . O 7 HOH A 24 524 61 HOH HOH . O 7 HOH A 25 525 34 HOH HOH . O 7 HOH A 26 526 124 HOH HOH . O 7 HOH A 27 527 86 HOH HOH . O 7 HOH A 28 528 110 HOH HOH . O 7 HOH A 29 529 53 HOH HOH . O 7 HOH A 30 530 10 HOH HOH . O 7 HOH A 31 531 58 HOH HOH . O 7 HOH A 32 532 119 HOH HOH . O 7 HOH A 33 533 140 HOH HOH . O 7 HOH A 34 534 41 HOH HOH . O 7 HOH A 35 535 96 HOH HOH . O 7 HOH A 36 536 88 HOH HOH . O 7 HOH A 37 537 166 HOH HOH . O 7 HOH A 38 538 45 HOH HOH . O 7 HOH A 39 539 102 HOH HOH . O 7 HOH A 40 540 36 HOH HOH . O 7 HOH A 41 541 69 HOH HOH . O 7 HOH A 42 542 54 HOH HOH . O 7 HOH A 43 543 74 HOH HOH . O 7 HOH A 44 544 13 HOH HOH . O 7 HOH A 45 545 28 HOH HOH . O 7 HOH A 46 546 51 HOH HOH . O 7 HOH A 47 547 122 HOH HOH . O 7 HOH A 48 548 152 HOH HOH . O 7 HOH A 49 549 7 HOH HOH . O 7 HOH A 50 550 57 HOH HOH . O 7 HOH A 51 551 210 HOH HOH . O 7 HOH A 52 552 173 HOH HOH . O 7 HOH A 53 553 114 HOH HOH . O 7 HOH A 54 554 5 HOH HOH . O 7 HOH A 55 555 180 HOH HOH . O 7 HOH A 56 556 32 HOH HOH . O 7 HOH A 57 557 83 HOH HOH . O 7 HOH A 58 558 15 HOH HOH . O 7 HOH A 59 559 113 HOH HOH . O 7 HOH A 60 560 202 HOH HOH . O 7 HOH A 61 561 201 HOH HOH . O 7 HOH A 62 562 175 HOH HOH . O 7 HOH A 63 563 204 HOH HOH . O 7 HOH A 64 564 128 HOH HOH . O 7 HOH A 65 565 89 HOH HOH . O 7 HOH A 66 566 1 HOH HOH . O 7 HOH A 67 567 42 HOH HOH . O 7 HOH A 68 568 11 HOH HOH . O 7 HOH A 69 569 75 HOH HOH . O 7 HOH A 70 570 227 HOH HOH . O 7 HOH A 71 571 60 HOH HOH . O 7 HOH A 72 572 79 HOH HOH . O 7 HOH A 73 573 221 HOH HOH . O 7 HOH A 74 574 176 HOH HOH . O 7 HOH A 75 575 68 HOH HOH . O 7 HOH A 76 576 222 HOH HOH . O 7 HOH A 77 577 67 HOH HOH . O 7 HOH A 78 578 199 HOH HOH . O 7 HOH A 79 579 46 HOH HOH . O 7 HOH A 80 580 62 HOH HOH . O 7 HOH A 81 581 224 HOH HOH . O 7 HOH A 82 582 217 HOH HOH . O 7 HOH A 83 583 33 HOH HOH . O 7 HOH A 84 584 19 HOH HOH . O 7 HOH A 85 585 35 HOH HOH . O 7 HOH A 86 586 207 HOH HOH . O 7 HOH A 87 587 94 HOH HOH . O 7 HOH A 88 588 126 HOH HOH . O 7 HOH A 89 589 2 HOH HOH . O 7 HOH A 90 590 134 HOH HOH . O 7 HOH A 91 591 130 HOH HOH . O 7 HOH A 92 592 163 HOH HOH . O 7 HOH A 93 593 50 HOH HOH . O 7 HOH A 94 594 52 HOH HOH . O 7 HOH A 95 595 196 HOH HOH . O 7 HOH A 96 596 40 HOH HOH . O 7 HOH A 97 597 107 HOH HOH . O 7 HOH A 98 598 95 HOH HOH . O 7 HOH A 99 599 4 HOH HOH . O 7 HOH A 100 600 101 HOH HOH . O 7 HOH A 101 601 162 HOH HOH . O 7 HOH A 102 602 148 HOH HOH . O 7 HOH A 103 603 169 HOH HOH . O 7 HOH A 104 604 192 HOH HOH . O 7 HOH A 105 605 116 HOH HOH . O 7 HOH A 106 606 174 HOH HOH . O 7 HOH A 107 607 97 HOH HOH . O 7 HOH A 108 608 37 HOH HOH . O 7 HOH A 109 609 120 HOH HOH . O 7 HOH A 110 610 150 HOH HOH . O 7 HOH A 111 611 77 HOH HOH . O 7 HOH A 112 612 228 HOH HOH . O 7 HOH A 113 613 208 HOH HOH . O 7 HOH A 114 614 141 HOH HOH . O 7 HOH A 115 615 127 HOH HOH . O 7 HOH A 116 616 161 HOH HOH . O 7 HOH A 117 617 193 HOH HOH . O 7 HOH A 118 618 212 HOH HOH . O 7 HOH A 119 619 91 HOH HOH . O 7 HOH A 120 620 183 HOH HOH . O 7 HOH A 121 621 133 HOH HOH . O 7 HOH A 122 622 185 HOH HOH . O 7 HOH A 123 623 191 HOH HOH . O 7 HOH A 124 624 160 HOH HOH . O 7 HOH A 125 625 18 HOH HOH . O 7 HOH A 126 626 143 HOH HOH . O 7 HOH A 127 627 182 HOH HOH . O 7 HOH A 128 628 149 HOH HOH . O 7 HOH A 129 629 137 HOH HOH . O 7 HOH A 130 630 167 HOH HOH . O 7 HOH A 131 631 216 HOH HOH . O 7 HOH A 132 632 198 HOH HOH . O 7 HOH A 133 633 129 HOH HOH . O 7 HOH A 134 634 145 HOH HOH . O 7 HOH A 135 635 172 HOH HOH . O 7 HOH A 136 636 230 HOH HOH . O 7 HOH A 137 637 82 HOH HOH . O 7 HOH A 138 638 131 HOH HOH . O 7 HOH A 139 639 144 HOH HOH . P 7 HOH B 1 601 78 HOH HOH . P 7 HOH B 2 602 213 HOH HOH . P 7 HOH B 3 603 118 HOH HOH . P 7 HOH B 4 604 153 HOH HOH . P 7 HOH B 5 605 203 HOH HOH . P 7 HOH B 6 606 73 HOH HOH . P 7 HOH B 7 607 197 HOH HOH . P 7 HOH B 8 608 38 HOH HOH . P 7 HOH B 9 609 65 HOH HOH . P 7 HOH B 10 610 80 HOH HOH . P 7 HOH B 11 611 139 HOH HOH . P 7 HOH B 12 612 26 HOH HOH . P 7 HOH B 13 613 171 HOH HOH . P 7 HOH B 14 614 220 HOH HOH . P 7 HOH B 15 615 117 HOH HOH . P 7 HOH B 16 616 39 HOH HOH . P 7 HOH B 17 617 76 HOH HOH . P 7 HOH B 18 618 90 HOH HOH . P 7 HOH B 19 619 158 HOH HOH . P 7 HOH B 20 620 138 HOH HOH . P 7 HOH B 21 621 112 HOH HOH . P 7 HOH B 22 622 59 HOH HOH . P 7 HOH B 23 623 48 HOH HOH . P 7 HOH B 24 624 6 HOH HOH . P 7 HOH B 25 625 168 HOH HOH . P 7 HOH B 26 626 23 HOH HOH . P 7 HOH B 27 627 44 HOH HOH . P 7 HOH B 28 628 22 HOH HOH . P 7 HOH B 29 629 103 HOH HOH . P 7 HOH B 30 630 111 HOH HOH . P 7 HOH B 31 631 205 HOH HOH . P 7 HOH B 32 632 14 HOH HOH . P 7 HOH B 33 633 25 HOH HOH . P 7 HOH B 34 634 27 HOH HOH . P 7 HOH B 35 635 214 HOH HOH . P 7 HOH B 36 636 81 HOH HOH . P 7 HOH B 37 637 84 HOH HOH . P 7 HOH B 38 638 157 HOH HOH . P 7 HOH B 39 639 17 HOH HOH . P 7 HOH B 40 640 226 HOH HOH . P 7 HOH B 41 641 12 HOH HOH . P 7 HOH B 42 642 219 HOH HOH . P 7 HOH B 43 643 215 HOH HOH . P 7 HOH B 44 644 8 HOH HOH . P 7 HOH B 45 645 125 HOH HOH . P 7 HOH B 46 646 100 HOH HOH . P 7 HOH B 47 647 31 HOH HOH . P 7 HOH B 48 648 43 HOH HOH . P 7 HOH B 49 649 108 HOH HOH . P 7 HOH B 50 650 9 HOH HOH . P 7 HOH B 51 651 98 HOH HOH . P 7 HOH B 52 652 64 HOH HOH . P 7 HOH B 53 653 70 HOH HOH . P 7 HOH B 54 654 56 HOH HOH . P 7 HOH B 55 655 49 HOH HOH . P 7 HOH B 56 656 47 HOH HOH . P 7 HOH B 57 657 109 HOH HOH . P 7 HOH B 58 658 66 HOH HOH . P 7 HOH B 59 659 200 HOH HOH . P 7 HOH B 60 660 147 HOH HOH . P 7 HOH B 61 661 142 HOH HOH . P 7 HOH B 62 662 21 HOH HOH . P 7 HOH B 63 663 30 HOH HOH . P 7 HOH B 64 664 179 HOH HOH . P 7 HOH B 65 665 121 HOH HOH . P 7 HOH B 66 666 24 HOH HOH . P 7 HOH B 67 667 72 HOH HOH . P 7 HOH B 68 668 29 HOH HOH . P 7 HOH B 69 669 71 HOH HOH . P 7 HOH B 70 670 177 HOH HOH . P 7 HOH B 71 671 55 HOH HOH . P 7 HOH B 72 672 105 HOH HOH . P 7 HOH B 73 673 104 HOH HOH . P 7 HOH B 74 674 159 HOH HOH . P 7 HOH B 75 675 99 HOH HOH . P 7 HOH B 76 676 209 HOH HOH . P 7 HOH B 77 677 218 HOH HOH . P 7 HOH B 78 678 132 HOH HOH . P 7 HOH B 79 679 92 HOH HOH . P 7 HOH B 80 680 184 HOH HOH . P 7 HOH B 81 681 225 HOH HOH . P 7 HOH B 82 682 195 HOH HOH . P 7 HOH B 83 683 151 HOH HOH . P 7 HOH B 84 684 232 HOH HOH . P 7 HOH B 85 685 186 HOH HOH . P 7 HOH B 86 686 146 HOH HOH . P 7 HOH B 87 687 223 HOH HOH . P 7 HOH B 88 688 181 HOH HOH . P 7 HOH B 89 689 233 HOH HOH . P 7 HOH B 90 690 136 HOH HOH . P 7 HOH B 91 691 211 HOH HOH . P 7 HOH B 92 692 231 HOH HOH . P 7 HOH B 93 693 206 HOH HOH . P 7 HOH B 94 694 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 11A . . . I 6 91.193 10.782 11.298 1 73.6 ? CAA 11A 501 B 1 HETATM 2 C CAD 11A . . . I 6 92.223 10.031 10.488 1 74.25 ? CAD 11A 501 B 1 HETATM 3 C CAE 11A . . . I 6 93.321 9.49 11.393 1 78.37 ? CAE 11A 501 B 1 HETATM 4 C CAF 11A . . . I 6 93.519 7.999 11.153 1 82.4 ? CAF 11A 501 B 1 HETATM 5 C CAG 11A . . . I 6 94.974 7.61 11.373 1 86.31 ? CAG 11A 501 B 1 HETATM 6 C CAH 11A . . . I 6 95.367 6.464 10.452 1 88.37 ? CAH 11A 501 B 1 HETATM 7 C CAI 11A . . . I 6 95.308 5.126 11.173 1 91.03 ? CAI 11A 501 B 1 HETATM 8 C CAJ 11A . . . I 6 96.452 5.029 12.171 1 93.74 ? CAJ 11A 501 B 1 HETATM 9 C CAK 11A . . . I 6 96.931 3.59 12.312 1 95.31 ? CAK 11A 501 B 1 HETATM 10 C CAL 11A . . . I 6 97.815 3.445 13.543 1 96.25 ? CAL 11A 501 B 1 HETATM 11 C CAM 11A . . . I 6 98.127 1.984 13.758 1 98.85 ? CAM 11A 501 B 1 HETATM 12 O OAC 11A . . . I 6 97.279 1.213 14.433 1 98.8 ? OAC 11A 501 B 1 HETATM 13 O OAB 11A . . . I 6 98.963 1.443 13.055 1 100.04 ? OAB 11A 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #