data_6I8Y # _model_server_result.job_id rLnz32ygIaIppHmrA68Fcw _model_server_result.datetime_utc '2024-11-15 22:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6I8Y # _exptl.entry_id 6I8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-methoxy-6'-[3-(pyrrolidin-1-yl)propoxy]spiro[cyclobutane-1,3'-indol]-2'-amine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I8Y _cell.length_a 116.17 _cell.length_b 116.17 _cell.length_c 43.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 91 A GLU 138 1_555 I NA NA . A NA 308 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc2 A OE2 GLU 91 A GLU 138 1_555 I NA NA . A NA 308 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc3 A OE1 GLN 170 A GLN 217 1_555 I NA NA . A NA 308 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C19 H27 N3 O2' _chem_comp.formula_weight 329.437 _chem_comp.id 2OD _chem_comp.mon_nstd_flag . _chem_comp.name "5'-methoxy-6'-[3-(pyrrolidin-1-yl)propoxy]spiro[cyclobutane-1,3'-indol]-2'-amine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 2OD sing 1 n n C19 C16 2OD sing 2 n n N3 C15 2OD sing 3 n n C12 C13 2OD sing 4 n n C12 C11 2OD sing 5 n n C13 C14 2OD sing 6 n n C15 N2 2OD doub 7 n n C15 C16 2OD sing 8 n n C18 C17 2OD sing 9 n n N2 C5 2OD sing 10 n n C16 C4 2OD sing 11 n n C16 C17 2OD sing 12 n n C11 N1 2OD sing 13 n n C4 C5 2OD doub 14 n y C4 C3 2OD sing 15 n y C5 C6 2OD sing 16 n y C14 N1 2OD sing 17 n n N1 C10 2OD sing 18 n n C3 C2 2OD doub 19 n y C6 C7 2OD doub 20 n y C2 C7 2OD sing 21 n y C2 O1 2OD sing 22 n n C7 O2 2OD sing 23 n n C8 O2 2OD sing 24 n n C8 C9 2OD sing 25 n n O1 C1 2OD sing 26 n n C10 C9 2OD sing 27 n n N3 H2 2OD sing 28 n n N3 H3 2OD sing 29 n n C6 H4 2OD sing 30 n n C8 H5 2OD sing 31 n n C8 H6 2OD sing 32 n n C10 H7 2OD sing 33 n n C10 H8 2OD sing 34 n n C13 H9 2OD sing 35 n n C13 H10 2OD sing 36 n n C17 H11 2OD sing 37 n n C17 H12 2OD sing 38 n n C19 H13 2OD sing 39 n n C19 H14 2OD sing 40 n n C18 H15 2OD sing 41 n n C18 H16 2OD sing 42 n n C3 H17 2OD sing 43 n n C1 H18 2OD sing 44 n n C1 H19 2OD sing 45 n n C1 H20 2OD sing 46 n n C9 H21 2OD sing 47 n n C9 H22 2OD sing 48 n n C14 H23 2OD sing 49 n n C14 H24 2OD sing 50 n n C12 H25 2OD sing 51 n n C12 H26 2OD sing 52 n n C11 H27 2OD sing 53 n n C11 H28 2OD sing 54 n n # _atom_sites.entry_id 6I8Y _atom_sites.fract_transf_matrix[1][1] 0.008608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2OD A 1 301 1 2OD LIG . C 2 2OD A 1 302 2 2OD LIG . D 3 EDO A 1 303 6 EDO EDO . E 3 EDO A 1 304 7 EDO EDO . F 4 DMS A 1 305 1 DMS DMS . G 5 MPD A 1 306 1 MPD MPD . H 6 GOL A 1 307 1 GOL GOL . I 7 NA A 1 308 1 NA NA . J 8 HOH A 1 401 162 HOH HOH . J 8 HOH A 2 402 62 HOH HOH . J 8 HOH A 3 403 100 HOH HOH . J 8 HOH A 4 404 61 HOH HOH . J 8 HOH A 5 405 101 HOH HOH . J 8 HOH A 6 406 11 HOH HOH . J 8 HOH A 7 407 45 HOH HOH . J 8 HOH A 8 408 89 HOH HOH . J 8 HOH A 9 409 174 HOH HOH . J 8 HOH A 10 410 95 HOH HOH . J 8 HOH A 11 411 46 HOH HOH . J 8 HOH A 12 412 1 HOH HOH . J 8 HOH A 13 413 12 HOH HOH . J 8 HOH A 14 414 135 HOH HOH . J 8 HOH A 15 415 49 HOH HOH . J 8 HOH A 16 416 36 HOH HOH . J 8 HOH A 17 417 14 HOH HOH . J 8 HOH A 18 418 66 HOH HOH . J 8 HOH A 19 419 24 HOH HOH . J 8 HOH A 20 420 81 HOH HOH . J 8 HOH A 21 421 74 HOH HOH . J 8 HOH A 22 422 3 HOH HOH . J 8 HOH A 23 423 25 HOH HOH . J 8 HOH A 24 424 4 HOH HOH . J 8 HOH A 25 425 60 HOH HOH . J 8 HOH A 26 426 106 HOH HOH . J 8 HOH A 27 427 2 HOH HOH . J 8 HOH A 28 428 108 HOH HOH . J 8 HOH A 29 429 23 HOH HOH . J 8 HOH A 30 430 43 HOH HOH . J 8 HOH A 31 431 52 HOH HOH . J 8 HOH A 32 432 102 HOH HOH . J 8 HOH A 33 433 37 HOH HOH . J 8 HOH A 34 434 140 HOH HOH . J 8 HOH A 35 435 10 HOH HOH . J 8 HOH A 36 436 170 HOH HOH . J 8 HOH A 37 437 33 HOH HOH . J 8 HOH A 38 438 6 HOH HOH . J 8 HOH A 39 439 8 HOH HOH . J 8 HOH A 40 440 27 HOH HOH . J 8 HOH A 41 441 57 HOH HOH . J 8 HOH A 42 442 31 HOH HOH . J 8 HOH A 43 443 69 HOH HOH . J 8 HOH A 44 444 173 HOH HOH . J 8 HOH A 45 445 5 HOH HOH . J 8 HOH A 46 446 160 HOH HOH . J 8 HOH A 47 447 82 HOH HOH . J 8 HOH A 48 448 19 HOH HOH . J 8 HOH A 49 449 56 HOH HOH . J 8 HOH A 50 450 20 HOH HOH . J 8 HOH A 51 451 30 HOH HOH . J 8 HOH A 52 452 70 HOH HOH . J 8 HOH A 53 453 165 HOH HOH . J 8 HOH A 54 454 21 HOH HOH . J 8 HOH A 55 455 42 HOH HOH . J 8 HOH A 56 456 114 HOH HOH . J 8 HOH A 57 457 71 HOH HOH . J 8 HOH A 58 458 77 HOH HOH . J 8 HOH A 59 459 91 HOH HOH . J 8 HOH A 60 460 9 HOH HOH . J 8 HOH A 61 461 40 HOH HOH . J 8 HOH A 62 462 28 HOH HOH . J 8 HOH A 63 463 73 HOH HOH . J 8 HOH A 64 464 109 HOH HOH . J 8 HOH A 65 465 35 HOH HOH . J 8 HOH A 66 466 84 HOH HOH . J 8 HOH A 67 467 103 HOH HOH . J 8 HOH A 68 468 164 HOH HOH . J 8 HOH A 69 469 59 HOH HOH . J 8 HOH A 70 470 75 HOH HOH . J 8 HOH A 71 471 54 HOH HOH . J 8 HOH A 72 472 50 HOH HOH . J 8 HOH A 73 473 72 HOH HOH . J 8 HOH A 74 474 87 HOH HOH . J 8 HOH A 75 475 171 HOH HOH . J 8 HOH A 76 476 32 HOH HOH . J 8 HOH A 77 477 53 HOH HOH . J 8 HOH A 78 478 38 HOH HOH . J 8 HOH A 79 479 22 HOH HOH . J 8 HOH A 80 480 90 HOH HOH . J 8 HOH A 81 481 34 HOH HOH . J 8 HOH A 82 482 167 HOH HOH . J 8 HOH A 83 483 172 HOH HOH . J 8 HOH A 84 484 169 HOH HOH . J 8 HOH A 85 485 13 HOH HOH . J 8 HOH A 86 486 148 HOH HOH . J 8 HOH A 87 487 88 HOH HOH . J 8 HOH A 88 488 94 HOH HOH . J 8 HOH A 89 489 17 HOH HOH . J 8 HOH A 90 490 168 HOH HOH . J 8 HOH A 91 491 7 HOH HOH . J 8 HOH A 92 492 113 HOH HOH . J 8 HOH A 93 493 161 HOH HOH . J 8 HOH A 94 494 78 HOH HOH . J 8 HOH A 95 495 16 HOH HOH . J 8 HOH A 96 496 67 HOH HOH . J 8 HOH A 97 497 39 HOH HOH . J 8 HOH A 98 498 48 HOH HOH . J 8 HOH A 99 499 51 HOH HOH . J 8 HOH A 100 500 110 HOH HOH . J 8 HOH A 101 501 58 HOH HOH . J 8 HOH A 102 502 55 HOH HOH . J 8 HOH A 103 503 64 HOH HOH . J 8 HOH A 104 504 86 HOH HOH . J 8 HOH A 105 505 68 HOH HOH . J 8 HOH A 106 506 126 HOH HOH . J 8 HOH A 107 507 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 2OD . . . B 2 36.334 -12.839 -15.358 1 21.69 ? N1 2OD 301 A 1 HETATM 2 N N3 2OD . . . B 2 37.493 -4.131 -19.013 1 32.51 ? N3 2OD 301 A 1 HETATM 3 C C4 2OD . . . B 2 38.135 -7.598 -17.926 1 20.79 ? C4 2OD 301 A 1 HETATM 4 C C5 2OD . . . B 2 36.718 -7.555 -18.164 1 18.72 ? C5 2OD 301 A 1 HETATM 5 C C6 2OD . . . B 2 35.884 -8.665 -17.986 1 17.37 ? C6 2OD 301 A 1 HETATM 6 C C7 2OD . . . B 2 36.558 -9.811 -17.565 1 15.64 ? C7 2OD 301 A 1 HETATM 7 C C8 2OD . . . B 2 34.523 -10.932 -16.991 1 17.63 ? C8 2OD 301 A 1 HETATM 8 C C10 2OD . . . B 2 35.142 -12.546 -15.055 1 20.39 ? C10 2OD 301 A 1 HETATM 9 C C13 2OD . . . B 2 38.079 -14.132 -14.546 1 22.72 ? C13 2OD 301 A 1 HETATM 10 C C15 2OD . . . B 2 37.507 -5.396 -18.662 1 28.24 ? C15 2OD 301 A 1 HETATM 11 C C17 2OD . . . B 2 39.667 -5.616 -17.225 1 35.74 ? C17 2OD 301 A 1 HETATM 12 C C16 2OD . . . B 2 38.633 -6.205 -18.179 1 29.98 ? C16 2OD 301 A 1 HETATM 13 C C19 2OD . . . B 2 39.614 -6.056 -19.318 1 35.19 ? C19 2OD 301 A 1 HETATM 14 C C18 2OD . . . B 2 40.703 -5.758 -18.311 1 34.03 ? C18 2OD 301 A 1 HETATM 15 C C3 2OD . . . B 2 38.766 -8.721 -17.459 1 18.89 ? C3 2OD 301 A 1 HETATM 16 N N2 2OD . . . B 2 36.319 -6.198 -18.605 1 22.67 ? N2 2OD 301 A 1 HETATM 17 C C2 2OD . . . B 2 37.922 -9.894 -17.274 1 16.66 ? C2 2OD 301 A 1 HETATM 18 O O1 2OD . . . B 2 38.348 -11.091 -16.799 1 20.52 ? O1 2OD 301 A 1 HETATM 19 C C1 2OD . . . B 2 39.75 -11.221 -16.561 1 23.15 ? C1 2OD 301 A 1 HETATM 20 O O2 2OD . . . B 2 35.917 -11.034 -17.259 1 17.21 ? O2 2OD 301 A 1 HETATM 21 C C9 2OD . . . B 2 34.197 -12.213 -16.204 1 22.08 ? C9 2OD 301 A 1 HETATM 22 C C14 2OD . . . B 2 36.972 -13.088 -14.242 1 23.36 ? C14 2OD 301 A 1 HETATM 23 C C12 2OD . . . B 2 37.749 -14.623 -15.903 1 23.58 ? C12 2OD 301 A 1 HETATM 24 C C11 2OD . . . B 2 36.49 -14.201 -16.136 1 21.57 ? C11 2OD 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #