data_6I8Y # _model_server_result.job_id wsysAqmAOyliW88lYFldUw _model_server_result.datetime_utc '2024-11-15 22:47:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 6I8Y # _exptl.entry_id 6I8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I8Y _cell.length_a 116.17 _cell.length_b 116.17 _cell.length_c 43.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 91 A GLU 138 1_555 I NA NA . A NA 308 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc2 A OE2 GLU 91 A GLU 138 1_555 I NA NA . A NA 308 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc3 A OE1 GLN 170 A GLN 217 1_555 I NA NA . A NA 308 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 322 n n C1 H11 MPD sing 323 n n C1 H12 MPD sing 324 n n C1 H13 MPD sing 325 n n C2 O2 MPD sing 326 n n C2 CM MPD sing 327 n n C2 C3 MPD sing 328 n n O2 HO2 MPD sing 329 n n CM HM1 MPD sing 330 n n CM HM2 MPD sing 331 n n CM HM3 MPD sing 332 n n C3 C4 MPD sing 333 n n C3 H31 MPD sing 334 n n C3 H32 MPD sing 335 n n C4 O4 MPD sing 336 n n C4 C5 MPD sing 337 n n C4 H4 MPD sing 338 n n O4 HO4 MPD sing 339 n n C5 H51 MPD sing 340 n n C5 H52 MPD sing 341 n n C5 H53 MPD sing 342 n n # _atom_sites.entry_id 6I8Y _atom_sites.fract_transf_matrix[1][1] 0.008608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2OD A 1 301 1 2OD LIG . C 2 2OD A 1 302 2 2OD LIG . D 3 EDO A 1 303 6 EDO EDO . E 3 EDO A 1 304 7 EDO EDO . F 4 DMS A 1 305 1 DMS DMS . G 5 MPD A 1 306 1 MPD MPD . H 6 GOL A 1 307 1 GOL GOL . I 7 NA A 1 308 1 NA NA . J 8 HOH A 1 401 162 HOH HOH . J 8 HOH A 2 402 62 HOH HOH . J 8 HOH A 3 403 100 HOH HOH . J 8 HOH A 4 404 61 HOH HOH . J 8 HOH A 5 405 101 HOH HOH . J 8 HOH A 6 406 11 HOH HOH . J 8 HOH A 7 407 45 HOH HOH . J 8 HOH A 8 408 89 HOH HOH . J 8 HOH A 9 409 174 HOH HOH . J 8 HOH A 10 410 95 HOH HOH . J 8 HOH A 11 411 46 HOH HOH . J 8 HOH A 12 412 1 HOH HOH . J 8 HOH A 13 413 12 HOH HOH . J 8 HOH A 14 414 135 HOH HOH . J 8 HOH A 15 415 49 HOH HOH . J 8 HOH A 16 416 36 HOH HOH . J 8 HOH A 17 417 14 HOH HOH . J 8 HOH A 18 418 66 HOH HOH . J 8 HOH A 19 419 24 HOH HOH . J 8 HOH A 20 420 81 HOH HOH . J 8 HOH A 21 421 74 HOH HOH . J 8 HOH A 22 422 3 HOH HOH . J 8 HOH A 23 423 25 HOH HOH . J 8 HOH A 24 424 4 HOH HOH . J 8 HOH A 25 425 60 HOH HOH . J 8 HOH A 26 426 106 HOH HOH . J 8 HOH A 27 427 2 HOH HOH . J 8 HOH A 28 428 108 HOH HOH . J 8 HOH A 29 429 23 HOH HOH . J 8 HOH A 30 430 43 HOH HOH . J 8 HOH A 31 431 52 HOH HOH . J 8 HOH A 32 432 102 HOH HOH . J 8 HOH A 33 433 37 HOH HOH . J 8 HOH A 34 434 140 HOH HOH . J 8 HOH A 35 435 10 HOH HOH . J 8 HOH A 36 436 170 HOH HOH . J 8 HOH A 37 437 33 HOH HOH . J 8 HOH A 38 438 6 HOH HOH . J 8 HOH A 39 439 8 HOH HOH . J 8 HOH A 40 440 27 HOH HOH . J 8 HOH A 41 441 57 HOH HOH . J 8 HOH A 42 442 31 HOH HOH . J 8 HOH A 43 443 69 HOH HOH . J 8 HOH A 44 444 173 HOH HOH . J 8 HOH A 45 445 5 HOH HOH . J 8 HOH A 46 446 160 HOH HOH . J 8 HOH A 47 447 82 HOH HOH . J 8 HOH A 48 448 19 HOH HOH . J 8 HOH A 49 449 56 HOH HOH . J 8 HOH A 50 450 20 HOH HOH . J 8 HOH A 51 451 30 HOH HOH . J 8 HOH A 52 452 70 HOH HOH . J 8 HOH A 53 453 165 HOH HOH . J 8 HOH A 54 454 21 HOH HOH . J 8 HOH A 55 455 42 HOH HOH . J 8 HOH A 56 456 114 HOH HOH . J 8 HOH A 57 457 71 HOH HOH . J 8 HOH A 58 458 77 HOH HOH . J 8 HOH A 59 459 91 HOH HOH . J 8 HOH A 60 460 9 HOH HOH . J 8 HOH A 61 461 40 HOH HOH . J 8 HOH A 62 462 28 HOH HOH . J 8 HOH A 63 463 73 HOH HOH . J 8 HOH A 64 464 109 HOH HOH . J 8 HOH A 65 465 35 HOH HOH . J 8 HOH A 66 466 84 HOH HOH . J 8 HOH A 67 467 103 HOH HOH . J 8 HOH A 68 468 164 HOH HOH . J 8 HOH A 69 469 59 HOH HOH . J 8 HOH A 70 470 75 HOH HOH . J 8 HOH A 71 471 54 HOH HOH . J 8 HOH A 72 472 50 HOH HOH . J 8 HOH A 73 473 72 HOH HOH . J 8 HOH A 74 474 87 HOH HOH . J 8 HOH A 75 475 171 HOH HOH . J 8 HOH A 76 476 32 HOH HOH . J 8 HOH A 77 477 53 HOH HOH . J 8 HOH A 78 478 38 HOH HOH . J 8 HOH A 79 479 22 HOH HOH . J 8 HOH A 80 480 90 HOH HOH . J 8 HOH A 81 481 34 HOH HOH . J 8 HOH A 82 482 167 HOH HOH . J 8 HOH A 83 483 172 HOH HOH . J 8 HOH A 84 484 169 HOH HOH . J 8 HOH A 85 485 13 HOH HOH . J 8 HOH A 86 486 148 HOH HOH . J 8 HOH A 87 487 88 HOH HOH . J 8 HOH A 88 488 94 HOH HOH . J 8 HOH A 89 489 17 HOH HOH . J 8 HOH A 90 490 168 HOH HOH . J 8 HOH A 91 491 7 HOH HOH . J 8 HOH A 92 492 113 HOH HOH . J 8 HOH A 93 493 161 HOH HOH . J 8 HOH A 94 494 78 HOH HOH . J 8 HOH A 95 495 16 HOH HOH . J 8 HOH A 96 496 67 HOH HOH . J 8 HOH A 97 497 39 HOH HOH . J 8 HOH A 98 498 48 HOH HOH . J 8 HOH A 99 499 51 HOH HOH . J 8 HOH A 100 500 110 HOH HOH . J 8 HOH A 101 501 58 HOH HOH . J 8 HOH A 102 502 55 HOH HOH . J 8 HOH A 103 503 64 HOH HOH . J 8 HOH A 104 504 86 HOH HOH . J 8 HOH A 105 505 68 HOH HOH . J 8 HOH A 106 506 126 HOH HOH . J 8 HOH A 107 507 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 5 54.897 -16.637 -2.735 1 63.7 ? C1 MPD 306 A 1 HETATM 2 C C2 MPD . . . G 5 54.049 -16.205 -3.933 1 67.12 ? C2 MPD 306 A 1 HETATM 3 O O2 MPD . . . G 5 54.989 -15.884 -4.992 1 59.47 ? O2 MPD 306 A 1 HETATM 4 C CM MPD . . . G 5 53.25 -17.349 -4.536 1 62.41 ? CM MPD 306 A 1 HETATM 5 C C3 MPD . . . G 5 53.139 -15.003 -3.624 1 80.85 ? C3 MPD 306 A 1 HETATM 6 C C4 MPD . . . G 5 52.313 -15.078 -2.329 1 89.08 ? C4 MPD 306 A 1 HETATM 7 O O4 MPD . . . G 5 53.086 -14.83 -1.173 1 81.38 ? O4 MPD 306 A 1 HETATM 8 C C5 MPD . . . G 5 51.199 -14.034 -2.33 1 98.87 ? C5 MPD 306 A 1 HETATM 9 H H11 MPD . . . G 5 54.68 -15.991 -1.884 1 76.48 ? H11 MPD 306 A 1 HETATM 10 H H12 MPD . . . G 5 55.953 -16.559 -2.991 1 76.48 ? H12 MPD 306 A 1 HETATM 11 H H13 MPD . . . G 5 54.661 -17.669 -2.476 1 76.48 ? H13 MPD 306 A 1 HETATM 12 H HO2 MPD . . . G 5 54.844 -14.961 -5.288 1 71.41 ? HO2 MPD 306 A 1 HETATM 13 H HM1 MPD . . . G 5 52.202 -17.06 -4.615 1 74.93 ? HM1 MPD 306 A 1 HETATM 14 H HM2 MPD . . . G 5 53.337 -18.229 -3.898 1 74.93 ? HM2 MPD 306 A 1 HETATM 15 H HM3 MPD . . . G 5 53.638 -17.581 -5.528 1 74.93 ? HM3 MPD 306 A 1 HETATM 16 H H31 MPD . . . G 5 53.759 -14.107 -3.581 1 97.06 ? H31 MPD 306 A 1 HETATM 17 H H32 MPD . . . G 5 52.451 -14.871 -4.459 1 97.06 ? H32 MPD 306 A 1 HETATM 18 H H4 MPD . . . G 5 51.861 -16.068 -2.262 1 106.94 ? H4 MPD 306 A 1 HETATM 19 H HO4 MPD . . . G 5 53.725 -14.11 -1.356 1 97.7 ? HO4 MPD 306 A 1 HETATM 20 H H51 MPD . . . G 5 51.302 -13.392 -1.455 1 118.68 ? H51 MPD 306 A 1 HETATM 21 H H52 MPD . . . G 5 50.232 -14.534 -2.302 1 118.68 ? H52 MPD 306 A 1 HETATM 22 H H53 MPD . . . G 5 51.269 -13.429 -3.234 1 118.68 ? H53 MPD 306 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #