data_6I93 # _model_server_result.job_id 1PRh0mJtEpzO7aUPEoMl5Q _model_server_result.datetime_utc '2024-12-02 00:42:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6I93 # _exptl.entry_id 6I93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID (CAPRYLIC ACID)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I93 _cell.length_a 55.889 _cell.length_b 96.892 _cell.length_c 128.429 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 83 A GLU 69 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 A OE2 GLU 116 A GLU 102 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc3 A OE1 GLU 116 A GLU 102 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc4 A ND1 HIS 119 A HIS 105 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc5 A OE2 GLU 181 A GLU 167 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 A OE2 GLU 216 A GLU 202 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 A ND1 HIS 219 A HIS 205 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc8 B FE FE . A FE 401 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc9 B FE FE . A FE 401 1_555 E O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc10 B FE FE . A FE 401 1_555 E O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc11 C FE FE . A FE 402 1_555 E O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc12 C FE FE . A FE 402 1_555 E O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? # _chem_comp.formula 'C8 H16 O2' _chem_comp.formula_weight 144.211 _chem_comp.id OCA _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID (CAPRYLIC ACID)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCA sing 224 n n C1 O1 OCA doub 225 n n C1 O2 OCA sing 226 n n C2 C3 OCA sing 227 n n C2 H21 OCA sing 228 n n C2 H22 OCA sing 229 n n C3 C4 OCA sing 230 n n C3 H31 OCA sing 231 n n C3 H32 OCA sing 232 n n C4 C5 OCA sing 233 n n C4 H41 OCA sing 234 n n C4 H42 OCA sing 235 n n C5 C6 OCA sing 236 n n C5 H51 OCA sing 237 n n C5 H52 OCA sing 238 n n C6 C7 OCA sing 239 n n C6 H61 OCA sing 240 n n C6 H62 OCA sing 241 n n C7 C8 OCA sing 242 n n C7 H71 OCA sing 243 n n C7 H72 OCA sing 244 n n C8 H81 OCA sing 245 n n C8 H82 OCA sing 246 n n C8 H83 OCA sing 247 n n O2 HO2 OCA sing 248 n n # _atom_sites.entry_id 6I93 _atom_sites.fract_transf_matrix[1][1] 0.017893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 401 1 FE FE . C 2 FE A 1 402 2 FE FE . D 3 OCA A 1 403 1 OCA OCA . E 4 HOH A 1 501 16 HOH HOH . E 4 HOH A 2 502 42 HOH HOH . E 4 HOH A 3 503 36 HOH HOH . E 4 HOH A 4 504 74 HOH HOH . E 4 HOH A 5 505 30 HOH HOH . E 4 HOH A 6 506 3 HOH HOH . E 4 HOH A 7 507 41 HOH HOH . E 4 HOH A 8 508 15 HOH HOH . E 4 HOH A 9 509 37 HOH HOH . E 4 HOH A 10 510 100 HOH HOH . E 4 HOH A 11 511 45 HOH HOH . E 4 HOH A 12 512 67 HOH HOH . E 4 HOH A 13 513 14 HOH HOH . E 4 HOH A 14 514 49 HOH HOH . E 4 HOH A 15 515 7 HOH HOH . E 4 HOH A 16 516 1 HOH HOH . E 4 HOH A 17 517 12 HOH HOH . E 4 HOH A 18 518 77 HOH HOH . E 4 HOH A 19 519 54 HOH HOH . E 4 HOH A 20 520 94 HOH HOH . E 4 HOH A 21 521 5 HOH HOH . E 4 HOH A 22 522 58 HOH HOH . E 4 HOH A 23 523 29 HOH HOH . E 4 HOH A 24 524 69 HOH HOH . E 4 HOH A 25 525 13 HOH HOH . E 4 HOH A 26 526 18 HOH HOH . E 4 HOH A 27 527 63 HOH HOH . E 4 HOH A 28 528 20 HOH HOH . E 4 HOH A 29 529 17 HOH HOH . E 4 HOH A 30 530 47 HOH HOH . E 4 HOH A 31 531 38 HOH HOH . E 4 HOH A 32 532 39 HOH HOH . E 4 HOH A 33 533 48 HOH HOH . E 4 HOH A 34 534 32 HOH HOH . E 4 HOH A 35 535 10 HOH HOH . E 4 HOH A 36 536 60 HOH HOH . E 4 HOH A 37 537 2 HOH HOH . E 4 HOH A 38 538 68 HOH HOH . E 4 HOH A 39 539 27 HOH HOH . E 4 HOH A 40 540 44 HOH HOH . E 4 HOH A 41 541 6 HOH HOH . E 4 HOH A 42 542 98 HOH HOH . E 4 HOH A 43 543 53 HOH HOH . E 4 HOH A 44 544 64 HOH HOH . E 4 HOH A 45 545 43 HOH HOH . E 4 HOH A 46 546 11 HOH HOH . E 4 HOH A 47 547 81 HOH HOH . E 4 HOH A 48 548 35 HOH HOH . E 4 HOH A 49 549 24 HOH HOH . E 4 HOH A 50 550 80 HOH HOH . E 4 HOH A 51 551 56 HOH HOH . E 4 HOH A 52 552 61 HOH HOH . E 4 HOH A 53 553 101 HOH HOH . E 4 HOH A 54 554 71 HOH HOH . E 4 HOH A 55 555 9 HOH HOH . E 4 HOH A 56 556 19 HOH HOH . E 4 HOH A 57 557 52 HOH HOH . E 4 HOH A 58 558 26 HOH HOH . E 4 HOH A 59 559 57 HOH HOH . E 4 HOH A 60 560 28 HOH HOH . E 4 HOH A 61 561 70 HOH HOH . E 4 HOH A 62 562 89 HOH HOH . E 4 HOH A 63 563 33 HOH HOH . E 4 HOH A 64 564 21 HOH HOH . E 4 HOH A 65 565 4 HOH HOH . E 4 HOH A 66 566 96 HOH HOH . E 4 HOH A 67 567 40 HOH HOH . E 4 HOH A 68 568 25 HOH HOH . E 4 HOH A 69 569 83 HOH HOH . E 4 HOH A 70 570 31 HOH HOH . E 4 HOH A 71 571 23 HOH HOH . E 4 HOH A 72 572 103 HOH HOH . E 4 HOH A 73 573 59 HOH HOH . E 4 HOH A 74 574 91 HOH HOH . E 4 HOH A 75 575 102 HOH HOH . E 4 HOH A 76 576 34 HOH HOH . E 4 HOH A 77 577 8 HOH HOH . E 4 HOH A 78 578 22 HOH HOH . E 4 HOH A 79 579 50 HOH HOH . E 4 HOH A 80 580 92 HOH HOH . E 4 HOH A 81 581 86 HOH HOH . E 4 HOH A 82 582 73 HOH HOH . E 4 HOH A 83 583 93 HOH HOH . E 4 HOH A 84 584 78 HOH HOH . E 4 HOH A 85 585 79 HOH HOH . E 4 HOH A 86 586 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCA . . . D 3 -14.923 18.173 20.751 1 61.61 ? C1 OCA 403 A 1 HETATM 2 C C2 OCA . . . D 3 -14.412 19.626 20.707 1 53.15 ? C2 OCA 403 A 1 HETATM 3 C C3 OCA . . . D 3 -15.339 20.576 21.493 1 50.73 ? C3 OCA 403 A 1 HETATM 4 C C4 OCA . . . D 3 -14.968 22.064 21.283 1 46.15 ? C4 OCA 403 A 1 HETATM 5 C C5 OCA . . . D 3 -15.678 22.924 22.348 1 47.94 ? C5 OCA 403 A 1 HETATM 6 C C6 OCA . . . D 3 -16.379 24.159 21.775 1 49.38 ? C6 OCA 403 A 1 HETATM 7 C C7 OCA . . . D 3 -17.903 24.151 21.991 1 59.07 ? C7 OCA 403 A 1 HETATM 8 C C8 OCA . . . D 3 -18.277 25.192 23.02 1 49.54 ? C8 OCA 403 A 1 HETATM 9 O O1 OCA . . . D 3 -14.32 17.18 20.203 1 57.8 ? O1 OCA 403 A 1 HETATM 10 O O2 OCA . . . D 3 -16.006 17.98 21.357 1 61.25 ? O2 OCA 403 A 1 HETATM 11 H H21 OCA . . . D 3 -14.368 19.919 19.783 1 63.78 ? H21 OCA 403 A 1 HETATM 12 H H22 OCA . . . D 3 -13.522 19.661 21.092 1 63.78 ? H22 OCA 403 A 1 HETATM 13 H H31 OCA . . . D 3 -15.275 20.366 22.438 1 60.87 ? H31 OCA 403 A 1 HETATM 14 H H32 OCA . . . D 3 -16.253 20.436 21.201 1 60.87 ? H32 OCA 403 A 1 HETATM 15 H H41 OCA . . . D 3 -15.249 22.346 20.399 1 55.38 ? H41 OCA 403 A 1 HETATM 16 H H42 OCA . . . D 3 -14.008 22.173 21.368 1 55.38 ? H42 OCA 403 A 1 HETATM 17 H H51 OCA . . . D 3 -15.021 23.216 22.999 1 57.52 ? H51 OCA 403 A 1 HETATM 18 H H52 OCA . . . D 3 -16.339 22.375 22.799 1 57.52 ? H52 OCA 403 A 1 HETATM 19 H H61 OCA . . . D 3 -16.201 24.203 20.822 1 59.25 ? H61 OCA 403 A 1 HETATM 20 H H62 OCA . . . D 3 -16.01 24.95 22.197 1 59.25 ? H62 OCA 403 A 1 HETATM 21 H H71 OCA . . . D 3 -18.18 23.275 22.302 1 70.88 ? H71 OCA 403 A 1 HETATM 22 H H72 OCA . . . D 3 -18.348 24.351 21.153 1 70.88 ? H72 OCA 403 A 1 HETATM 23 H H81 OCA . . . D 3 -17.839 24.987 23.861 1 59.45 ? H81 OCA 403 A 1 HETATM 24 H H82 OCA . . . D 3 -19.238 25.191 23.147 1 59.45 ? H82 OCA 403 A 1 HETATM 25 H H83 OCA . . . D 3 -17.993 26.067 22.713 1 59.45 ? H83 OCA 403 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 744 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #