data_6I94 # _model_server_result.job_id bZ53lxBbbq9bWwMLwooFpw _model_server_result.datetime_utc '2024-10-19 09:22:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6I94 # _exptl.entry_id 6I94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID (CAPRYLIC ACID)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I94 _cell.length_a 55.815 _cell.length_b 97.2 _cell.length_c 126.921 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 83 A GLU 69 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A OE2 GLU 116 A GLU 102 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A OE1 GLU 116 A GLU 102 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc4 A ND1 HIS 119 A HIS 105 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc5 A NE2 HIS 144 A HIS 130 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 A OE1 GLU 181 A GLU 167 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 A OE2 GLU 181 A GLU 167 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc8 A OE2 GLU 216 A GLU 202 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc9 A OE1 GLU 216 A GLU 202 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc10 A OE2 GLU 216 A GLU 202 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 A ND1 HIS 219 A HIS 205 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc12 B MN MN . A MN 401 1_555 F O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C8 H16 O2' _chem_comp.formula_weight 144.211 _chem_comp.id OCA _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID (CAPRYLIC ACID)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCA sing 224 n n C1 O1 OCA doub 225 n n C1 O2 OCA sing 226 n n C2 C3 OCA sing 227 n n C2 H21 OCA sing 228 n n C2 H22 OCA sing 229 n n C3 C4 OCA sing 230 n n C3 H31 OCA sing 231 n n C3 H32 OCA sing 232 n n C4 C5 OCA sing 233 n n C4 H41 OCA sing 234 n n C4 H42 OCA sing 235 n n C5 C6 OCA sing 236 n n C5 H51 OCA sing 237 n n C5 H52 OCA sing 238 n n C6 C7 OCA sing 239 n n C6 H61 OCA sing 240 n n C6 H62 OCA sing 241 n n C7 C8 OCA sing 242 n n C7 H71 OCA sing 243 n n C7 H72 OCA sing 244 n n C8 H81 OCA sing 245 n n C8 H82 OCA sing 246 n n C8 H83 OCA sing 247 n n O2 HO2 OCA sing 248 n n # _atom_sites.entry_id 6I94 _atom_sites.fract_transf_matrix[1][1] 0.017916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 1 MN MN . C 2 MN A 1 402 2 MN MN . D 2 MN A 1 403 3 MN MN . E 3 OCA A 1 404 1 OCA OCA . F 4 HOH A 1 501 5 HOH HOH . F 4 HOH A 2 502 76 HOH HOH . F 4 HOH A 3 503 78 HOH HOH . F 4 HOH A 4 504 56 HOH HOH . F 4 HOH A 5 505 94 HOH HOH . F 4 HOH A 6 506 58 HOH HOH . F 4 HOH A 7 507 82 HOH HOH . F 4 HOH A 8 508 123 HOH HOH . F 4 HOH A 9 509 29 HOH HOH . F 4 HOH A 10 510 105 HOH HOH . F 4 HOH A 11 511 3 HOH HOH . F 4 HOH A 12 512 77 HOH HOH . F 4 HOH A 13 513 1 HOH HOH . F 4 HOH A 14 514 57 HOH HOH . F 4 HOH A 15 515 113 HOH HOH . F 4 HOH A 16 516 50 HOH HOH . F 4 HOH A 17 517 63 HOH HOH . F 4 HOH A 18 518 115 HOH HOH . F 4 HOH A 19 519 17 HOH HOH . F 4 HOH A 20 520 90 HOH HOH . F 4 HOH A 21 521 28 HOH HOH . F 4 HOH A 22 522 98 HOH HOH . F 4 HOH A 23 523 69 HOH HOH . F 4 HOH A 24 524 116 HOH HOH . F 4 HOH A 25 525 104 HOH HOH . F 4 HOH A 26 526 24 HOH HOH . F 4 HOH A 27 527 21 HOH HOH . F 4 HOH A 28 528 54 HOH HOH . F 4 HOH A 29 529 43 HOH HOH . F 4 HOH A 30 530 31 HOH HOH . F 4 HOH A 31 531 9 HOH HOH . F 4 HOH A 32 532 11 HOH HOH . F 4 HOH A 33 533 89 HOH HOH . F 4 HOH A 34 534 64 HOH HOH . F 4 HOH A 35 535 71 HOH HOH . F 4 HOH A 36 536 4 HOH HOH . F 4 HOH A 37 537 49 HOH HOH . F 4 HOH A 38 538 34 HOH HOH . F 4 HOH A 39 539 15 HOH HOH . F 4 HOH A 40 540 74 HOH HOH . F 4 HOH A 41 541 53 HOH HOH . F 4 HOH A 42 542 65 HOH HOH . F 4 HOH A 43 543 52 HOH HOH . F 4 HOH A 44 544 66 HOH HOH . F 4 HOH A 45 545 19 HOH HOH . F 4 HOH A 46 546 37 HOH HOH . F 4 HOH A 47 547 100 HOH HOH . F 4 HOH A 48 548 7 HOH HOH . F 4 HOH A 49 549 6 HOH HOH . F 4 HOH A 50 550 79 HOH HOH . F 4 HOH A 51 551 67 HOH HOH . F 4 HOH A 52 552 60 HOH HOH . F 4 HOH A 53 553 18 HOH HOH . F 4 HOH A 54 554 8 HOH HOH . F 4 HOH A 55 555 103 HOH HOH . F 4 HOH A 56 556 107 HOH HOH . F 4 HOH A 57 557 20 HOH HOH . F 4 HOH A 58 558 12 HOH HOH . F 4 HOH A 59 559 80 HOH HOH . F 4 HOH A 60 560 33 HOH HOH . F 4 HOH A 61 561 36 HOH HOH . F 4 HOH A 62 562 14 HOH HOH . F 4 HOH A 63 563 13 HOH HOH . F 4 HOH A 64 564 59 HOH HOH . F 4 HOH A 65 565 38 HOH HOH . F 4 HOH A 66 566 101 HOH HOH . F 4 HOH A 67 567 75 HOH HOH . F 4 HOH A 68 568 97 HOH HOH . F 4 HOH A 69 569 35 HOH HOH . F 4 HOH A 70 570 42 HOH HOH . F 4 HOH A 71 571 47 HOH HOH . F 4 HOH A 72 572 16 HOH HOH . F 4 HOH A 73 573 112 HOH HOH . F 4 HOH A 74 574 26 HOH HOH . F 4 HOH A 75 575 45 HOH HOH . F 4 HOH A 76 576 44 HOH HOH . F 4 HOH A 77 577 110 HOH HOH . F 4 HOH A 78 578 122 HOH HOH . F 4 HOH A 79 579 73 HOH HOH . F 4 HOH A 80 580 41 HOH HOH . F 4 HOH A 81 581 32 HOH HOH . F 4 HOH A 82 582 96 HOH HOH . F 4 HOH A 83 583 88 HOH HOH . F 4 HOH A 84 584 48 HOH HOH . F 4 HOH A 85 585 40 HOH HOH . F 4 HOH A 86 586 25 HOH HOH . F 4 HOH A 87 587 23 HOH HOH . F 4 HOH A 88 588 92 HOH HOH . F 4 HOH A 89 589 30 HOH HOH . F 4 HOH A 90 590 46 HOH HOH . F 4 HOH A 91 591 81 HOH HOH . F 4 HOH A 92 592 114 HOH HOH . F 4 HOH A 93 593 51 HOH HOH . F 4 HOH A 94 594 10 HOH HOH . F 4 HOH A 95 595 27 HOH HOH . F 4 HOH A 96 596 72 HOH HOH . F 4 HOH A 97 597 70 HOH HOH . F 4 HOH A 98 598 121 HOH HOH . F 4 HOH A 99 599 87 HOH HOH . F 4 HOH A 100 600 95 HOH HOH . F 4 HOH A 101 601 61 HOH HOH . F 4 HOH A 102 602 119 HOH HOH . F 4 HOH A 103 603 86 HOH HOH . F 4 HOH A 104 604 85 HOH HOH . F 4 HOH A 105 605 111 HOH HOH . F 4 HOH A 106 606 91 HOH HOH . F 4 HOH A 107 607 22 HOH HOH . F 4 HOH A 108 608 84 HOH HOH . F 4 HOH A 109 609 109 HOH HOH . F 4 HOH A 110 610 108 HOH HOH . F 4 HOH A 111 611 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCA . . . E 3 -15.332 18.03 20.646 1 42.18 ? C1 OCA 404 A 1 HETATM 2 C C2 OCA . . . E 3 -14.649 19.402 20.626 1 40.3 ? C2 OCA 404 A 1 HETATM 3 C C3 OCA . . . E 3 -15.529 20.434 21.335 1 40.61 ? C3 OCA 404 A 1 HETATM 4 C C4 OCA . . . E 3 -14.974 21.862 21.188 1 43.09 ? C4 OCA 404 A 1 HETATM 5 C C5 OCA . . . E 3 -15.58 22.697 22.332 1 44.41 ? C5 OCA 404 A 1 HETATM 6 C C6 OCA . . . E 3 -15.987 24.109 21.925 1 46.1 ? C6 OCA 404 A 1 HETATM 7 C C7 OCA . . . E 3 -17.501 24.283 21.93 1 43.78 ? C7 OCA 404 A 1 HETATM 8 C C8 OCA . . . E 3 -17.841 25.441 22.847 1 47.94 ? C8 OCA 404 A 1 HETATM 9 O O1 OCA . . . E 3 -14.714 16.983 20.275 1 66.92 ? O1 OCA 404 A 1 HETATM 10 O O2 OCA . . . E 3 -16.54 17.926 21 1 73.1 ? O2 OCA 404 A 1 HETATM 11 H H21 OCA . . . E 3 -14.507 19.678 19.707 1 48.36 ? H21 OCA 404 A 1 HETATM 12 H H22 OCA . . . E 3 -13.794 19.342 21.08 1 48.36 ? H22 OCA 404 A 1 HETATM 13 H H31 OCA . . . E 3 -15.579 20.211 22.278 1 48.73 ? H31 OCA 404 A 1 HETATM 14 H H32 OCA . . . E 3 -16.421 20.401 20.956 1 48.73 ? H32 OCA 404 A 1 HETATM 15 H H41 OCA . . . E 3 -15.237 22.233 20.331 1 51.71 ? H41 OCA 404 A 1 HETATM 16 H H42 OCA . . . E 3 -14.007 21.851 21.262 1 51.71 ? H42 OCA 404 A 1 HETATM 17 H H51 OCA . . . E 3 -14.927 22.759 23.047 1 53.3 ? H51 OCA 404 A 1 HETATM 18 H H52 OCA . . . E 3 -16.364 22.235 22.668 1 53.3 ? H52 OCA 404 A 1 HETATM 19 H H61 OCA . . . E 3 -15.651 24.29 21.033 1 55.32 ? H61 OCA 404 A 1 HETATM 20 H H62 OCA . . . E 3 -15.594 24.743 22.545 1 55.32 ? H62 OCA 404 A 1 HETATM 21 H H71 OCA . . . E 3 -17.923 23.473 22.255 1 52.53 ? H71 OCA 404 A 1 HETATM 22 H H72 OCA . . . E 3 -17.812 24.476 21.031 1 52.53 ? H72 OCA 404 A 1 HETATM 23 H H81 OCA . . . E 3 -17.532 25.243 23.745 1 57.53 ? H81 OCA 404 A 1 HETATM 24 H H82 OCA . . . E 3 -18.801 25.575 22.857 1 57.53 ? H82 OCA 404 A 1 HETATM 25 H H83 OCA . . . E 3 -17.405 26.246 22.526 1 57.53 ? H83 OCA 404 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #