data_6I95 # _model_server_result.job_id qA4HYxaYhWm0sml6vHq3Mw _model_server_result.datetime_utc '2024-10-19 10:27:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6I95 # _exptl.entry_id 6I95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.211 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID (CAPRYLIC ACID)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I95 _cell.length_a 55.958 _cell.length_b 97.602 _cell.length_c 127.528 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 83 A GLU 69 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 A OE1 GLU 116 A GLU 102 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 A OE2 GLU 116 A GLU 102 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A ND1 HIS 119 A HIS 105 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 A NE2 HIS 144 A HIS 130 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 A OE1 GLU 181 A GLU 167 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc7 A OE2 GLU 181 A GLU 167 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 A OE2 GLU 216 A GLU 202 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 A OE1 GLU 216 A GLU 202 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc10 A OE2 GLU 216 A GLU 202 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc11 A ND1 HIS 219 A HIS 205 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc12 B MN MN . A MN 401 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc13 D FE FE2 . A FE2 403 1_555 F O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc14 D FE FE2 . A FE2 403 1_555 F O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? # _chem_comp.formula 'C8 H16 O2' _chem_comp.formula_weight 144.211 _chem_comp.id OCA _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID (CAPRYLIC ACID)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCA sing 224 n n C1 O1 OCA doub 225 n n C1 O2 OCA sing 226 n n C2 C3 OCA sing 227 n n C2 H21 OCA sing 228 n n C2 H22 OCA sing 229 n n C3 C4 OCA sing 230 n n C3 H31 OCA sing 231 n n C3 H32 OCA sing 232 n n C4 C5 OCA sing 233 n n C4 H41 OCA sing 234 n n C4 H42 OCA sing 235 n n C5 C6 OCA sing 236 n n C5 H51 OCA sing 237 n n C5 H52 OCA sing 238 n n C6 C7 OCA sing 239 n n C6 H61 OCA sing 240 n n C6 H62 OCA sing 241 n n C7 C8 OCA sing 242 n n C7 H71 OCA sing 243 n n C7 H72 OCA sing 244 n n C8 H81 OCA sing 245 n n C8 H82 OCA sing 246 n n C8 H83 OCA sing 247 n n O2 HO2 OCA sing 248 n n # _atom_sites.entry_id 6I95 _atom_sites.fract_transf_matrix[1][1] 0.017871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 1 MN MN . C 3 FE2 A 1 402 2 FE2 FE2 . D 3 FE2 A 1 403 1 FE2 FE2 . E 4 OCA A 1 404 1 OCA OCA . F 5 HOH A 1 501 88 HOH HOH . F 5 HOH A 2 502 18 HOH HOH . F 5 HOH A 3 503 105 HOH HOH . F 5 HOH A 4 504 51 HOH HOH . F 5 HOH A 5 505 102 HOH HOH . F 5 HOH A 6 506 3 HOH HOH . F 5 HOH A 7 507 116 HOH HOH . F 5 HOH A 8 508 86 HOH HOH . F 5 HOH A 9 509 10 HOH HOH . F 5 HOH A 10 510 23 HOH HOH . F 5 HOH A 11 511 40 HOH HOH . F 5 HOH A 12 512 60 HOH HOH . F 5 HOH A 13 513 32 HOH HOH . F 5 HOH A 14 514 100 HOH HOH . F 5 HOH A 15 515 29 HOH HOH . F 5 HOH A 16 516 44 HOH HOH . F 5 HOH A 17 517 15 HOH HOH . F 5 HOH A 18 518 62 HOH HOH . F 5 HOH A 19 519 22 HOH HOH . F 5 HOH A 20 520 75 HOH HOH . F 5 HOH A 21 521 8 HOH HOH . F 5 HOH A 22 522 68 HOH HOH . F 5 HOH A 23 523 4 HOH HOH . F 5 HOH A 24 524 57 HOH HOH . F 5 HOH A 25 525 58 HOH HOH . F 5 HOH A 26 526 24 HOH HOH . F 5 HOH A 27 527 6 HOH HOH . F 5 HOH A 28 528 113 HOH HOH . F 5 HOH A 29 529 19 HOH HOH . F 5 HOH A 30 530 49 HOH HOH . F 5 HOH A 31 531 30 HOH HOH . F 5 HOH A 32 532 16 HOH HOH . F 5 HOH A 33 533 74 HOH HOH . F 5 HOH A 34 534 43 HOH HOH . F 5 HOH A 35 535 42 HOH HOH . F 5 HOH A 36 536 1 HOH HOH . F 5 HOH A 37 537 85 HOH HOH . F 5 HOH A 38 538 36 HOH HOH . F 5 HOH A 39 539 69 HOH HOH . F 5 HOH A 40 540 101 HOH HOH . F 5 HOH A 41 541 7 HOH HOH . F 5 HOH A 42 542 66 HOH HOH . F 5 HOH A 43 543 80 HOH HOH . F 5 HOH A 44 544 73 HOH HOH . F 5 HOH A 45 545 54 HOH HOH . F 5 HOH A 46 546 26 HOH HOH . F 5 HOH A 47 547 2 HOH HOH . F 5 HOH A 48 548 9 HOH HOH . F 5 HOH A 49 549 14 HOH HOH . F 5 HOH A 50 550 114 HOH HOH . F 5 HOH A 51 551 48 HOH HOH . F 5 HOH A 52 552 65 HOH HOH . F 5 HOH A 53 553 28 HOH HOH . F 5 HOH A 54 554 17 HOH HOH . F 5 HOH A 55 555 25 HOH HOH . F 5 HOH A 56 556 50 HOH HOH . F 5 HOH A 57 557 78 HOH HOH . F 5 HOH A 58 558 96 HOH HOH . F 5 HOH A 59 559 63 HOH HOH . F 5 HOH A 60 560 33 HOH HOH . F 5 HOH A 61 561 38 HOH HOH . F 5 HOH A 62 562 47 HOH HOH . F 5 HOH A 63 563 79 HOH HOH . F 5 HOH A 64 564 82 HOH HOH . F 5 HOH A 65 565 39 HOH HOH . F 5 HOH A 66 566 41 HOH HOH . F 5 HOH A 67 567 64 HOH HOH . F 5 HOH A 68 568 87 HOH HOH . F 5 HOH A 69 569 37 HOH HOH . F 5 HOH A 70 570 27 HOH HOH . F 5 HOH A 71 571 21 HOH HOH . F 5 HOH A 72 572 34 HOH HOH . F 5 HOH A 73 573 115 HOH HOH . F 5 HOH A 74 574 12 HOH HOH . F 5 HOH A 75 575 89 HOH HOH . F 5 HOH A 76 576 55 HOH HOH . F 5 HOH A 77 577 76 HOH HOH . F 5 HOH A 78 578 5 HOH HOH . F 5 HOH A 79 579 46 HOH HOH . F 5 HOH A 80 580 31 HOH HOH . F 5 HOH A 81 581 71 HOH HOH . F 5 HOH A 82 582 92 HOH HOH . F 5 HOH A 83 583 56 HOH HOH . F 5 HOH A 84 584 91 HOH HOH . F 5 HOH A 85 585 13 HOH HOH . F 5 HOH A 86 586 81 HOH HOH . F 5 HOH A 87 587 61 HOH HOH . F 5 HOH A 88 588 52 HOH HOH . F 5 HOH A 89 589 98 HOH HOH . F 5 HOH A 90 590 72 HOH HOH . F 5 HOH A 91 591 70 HOH HOH . F 5 HOH A 92 592 110 HOH HOH . F 5 HOH A 93 593 95 HOH HOH . F 5 HOH A 94 594 99 HOH HOH . F 5 HOH A 95 595 83 HOH HOH . F 5 HOH A 96 596 112 HOH HOH . F 5 HOH A 97 597 103 HOH HOH . F 5 HOH A 98 598 106 HOH HOH . F 5 HOH A 99 599 97 HOH HOH . F 5 HOH A 100 600 109 HOH HOH . F 5 HOH A 101 601 104 HOH HOH . F 5 HOH A 102 602 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCA . . . E 4 -15.397 17.853 20.73 1 55.59 ? C1 OCA 404 A 1 HETATM 2 C C2 OCA . . . E 4 -14.686 19.194 20.562 1 45.85 ? C2 OCA 404 A 1 HETATM 3 C C3 OCA . . . E 4 -15.584 20.342 21.021 1 53.1 ? C3 OCA 404 A 1 HETATM 4 C C4 OCA . . . E 4 -14.749 21.609 21.2 1 56.36 ? C4 OCA 404 A 1 HETATM 5 C C5 OCA . . . E 4 -15.604 22.871 21.031 1 63.46 ? C5 OCA 404 A 1 HETATM 6 C C6 OCA . . . E 4 -16.108 23.382 22.379 1 59.84 ? C6 OCA 404 A 1 HETATM 7 C C7 OCA . . . E 4 -16.72 24.783 22.229 1 53.79 ? C7 OCA 404 A 1 HETATM 8 C C8 OCA . . . E 4 -18.238 24.686 22.227 1 54.25 ? C8 OCA 404 A 1 HETATM 9 O O1 OCA . . . E 4 -14.844 16.764 20.371 1 54.19 ? O1 OCA 404 A 1 HETATM 10 O O2 OCA . . . E 4 -16.558 17.835 21.211 1 65.99 ? O2 OCA 404 A 1 HETATM 11 H H21 OCA . . . E 4 -14.458 19.321 19.628 1 55.02 ? H21 OCA 404 A 1 HETATM 12 H H22 OCA . . . E 4 -13.873 19.193 21.092 1 55.02 ? H22 OCA 404 A 1 HETATM 13 H H31 OCA . . . E 4 -16 20.108 21.865 1 63.72 ? H31 OCA 404 A 1 HETATM 14 H H32 OCA . . . E 4 -16.271 20.5 20.355 1 63.72 ? H32 OCA 404 A 1 HETATM 15 H H41 OCA . . . E 4 -14.039 21.617 20.539 1 67.63 ? H41 OCA 404 A 1 HETATM 16 H H42 OCA . . . E 4 -14.357 21.608 22.087 1 67.63 ? H42 OCA 404 A 1 HETATM 17 H H51 OCA . . . E 4 -16.364 22.666 20.464 1 76.15 ? H51 OCA 404 A 1 HETATM 18 H H52 OCA . . . E 4 -15.07 23.562 20.608 1 76.15 ? H52 OCA 404 A 1 HETATM 19 H H61 OCA . . . E 4 -15.367 23.422 23.004 1 71.8 ? H61 OCA 404 A 1 HETATM 20 H H62 OCA . . . E 4 -16.781 22.773 22.72 1 71.8 ? H62 OCA 404 A 1 HETATM 21 H H71 OCA . . . E 4 -16.421 25.177 21.395 1 64.54 ? H71 OCA 404 A 1 HETATM 22 H H72 OCA . . . E 4 -16.433 25.34 22.969 1 64.54 ? H72 OCA 404 A 1 HETATM 23 H H81 OCA . . . E 4 -18.527 24.138 21.481 1 65.1 ? H81 OCA 404 A 1 HETATM 24 H H82 OCA . . . E 4 -18.618 25.575 22.142 1 65.1 ? H82 OCA 404 A 1 HETATM 25 H H83 OCA . . . E 4 -18.538 24.285 23.058 1 65.1 ? H83 OCA 404 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #