data_6I97 # _model_server_result.job_id 9WBZD5ZJ5M_egs6Vyzqr9g _model_server_result.datetime_utc '2024-11-22 00:23:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 6I97 # _exptl.entry_id 6I97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 613.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Ferrioxamine B' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I97 _cell.length_a 163.639 _cell.length_b 174.404 _cell.length_c 214.114 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 746 A CYS 798 1_555 A SG CYS 752 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 746 B CYS 798 1_555 B SG CYS 752 B CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? # _chem_comp.formula 'C25 H45 Fe N6 O8' _chem_comp.formula_weight 613.505 _chem_comp.id 0UE _chem_comp.mon_nstd_flag . _chem_comp.name 'Ferrioxamine B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 0UE sing 1 n n C19 N21 0UE sing 2 n n C18 C17 0UE sing 3 n n C23 C22 0UE sing 4 n n C23 C24 0UE sing 5 n n N21 O21 0UE sing 6 n n N21 C21 0UE sing 7 n n C17 C16 0UE sing 8 n n C16 C15 0UE sing 9 n n C15 N12 0UE sing 10 n n C22 C21 0UE sing 11 n n C43 C42 0UE sing 12 n n C43 N44 0UE sing 13 n n O21 FE 0UE sing 14 n n C42 C41 0UE sing 15 n n C21 O22 0UE doub 16 n n C24 N22 0UE sing 17 n n C24 O23 0UE doub 18 n n N22 C25 0UE sing 19 n n N12 C14 0UE sing 20 n n O32 C31 0UE doub 21 n n O32 FE 0UE sing 22 n n C32 C31 0UE sing 23 n n C40 C41 0UE sing 24 n n C40 C39 0UE sing 25 n n O22 FE 0UE sing 26 n n C25 C26 0UE sing 27 n n C31 N31 0UE sing 28 n n FE O11 0UE sing 29 n n FE O12 0UE sing 30 n n FE O31 0UE sing 31 n n C14 O13 0UE doub 32 n n C14 C13 0UE sing 33 n n O11 N11 0UE sing 34 n n C26 C27 0UE sing 35 n n C39 N11 0UE sing 36 n n N11 C11 0UE sing 37 n n O12 C11 0UE doub 38 n n N31 O31 0UE sing 39 n n N31 C29 0UE sing 40 n n C13 C12 0UE sing 41 n n C11 C12 0UE sing 42 n n C27 C28 0UE sing 43 n n C29 C28 0UE sing 44 n n C12 H2 0UE sing 45 n n C12 H3 0UE sing 46 n n C13 H4 0UE sing 47 n n C13 H5 0UE sing 48 n n N12 H6 0UE sing 49 n n C15 H7 0UE sing 50 n n C15 H8 0UE sing 51 n n C16 H9 0UE sing 52 n n C16 H10 0UE sing 53 n n C18 H11 0UE sing 54 n n C18 H12 0UE sing 55 n n C17 H13 0UE sing 56 n n C17 H14 0UE sing 57 n n C19 H15 0UE sing 58 n n C19 H16 0UE sing 59 n n C22 H18 0UE sing 60 n n C22 H19 0UE sing 61 n n C23 H20 0UE sing 62 n n C23 H21 0UE sing 63 n n N22 H22 0UE sing 64 n n C25 H23 0UE sing 65 n n C25 H24 0UE sing 66 n n C26 H25 0UE sing 67 n n C26 H26 0UE sing 68 n n C27 H27 0UE sing 69 n n C27 H28 0UE sing 70 n n C28 H29 0UE sing 71 n n C28 H30 0UE sing 72 n n C29 H31 0UE sing 73 n n C29 H32 0UE sing 74 n n C32 H34 0UE sing 75 n n C32 H35 0UE sing 76 n n C32 H36 0UE sing 77 n n C39 H37 0UE sing 78 n n C39 H38 0UE sing 79 n n C40 H39 0UE sing 80 n n C40 H40 0UE sing 81 n n C41 H41 0UE sing 82 n n C41 H42 0UE sing 83 n n C42 H43 0UE sing 84 n n C42 H44 0UE sing 85 n n C43 H45 0UE sing 86 n n C43 H46 0UE sing 87 n n N44 H47 0UE sing 88 n n N44 H48 0UE sing 89 n n # _atom_sites.entry_id 6I97 _atom_sites.fract_transf_matrix[1][1] 0.006111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 0UE A 1 901 402 0UE 0UE . F 3 0UE B 1 901 401 0UE 0UE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE 0UE . . . E 3 -21.858 11.023 75.091 1 85.98 ? FE 0UE 901 A 1 HETATM 2 O O11 0UE . . . E 3 -19.962 11.283 74.715 1 102.43 ? O11 0UE 901 A 1 HETATM 3 O O12 0UE . . . E 3 -21.18 9.308 74.372 1 103.48 ? O12 0UE 901 A 1 HETATM 4 O O21 0UE . . . E 3 -22.655 10.219 76.625 1 89.65 ? O21 0UE 901 A 1 HETATM 5 O O22 0UE . . . E 3 -23.544 10.557 74.251 1 90.77 ? O22 0UE 901 A 1 HETATM 6 O O31 0UE . . . E 3 -22.251 12.572 74.063 1 77.67 ? O31 0UE 901 A 1 HETATM 7 O O32 0UE . . . E 3 -21.602 12.2 76.596 1 79.86 ? O32 0UE 901 A 1 HETATM 8 N N11 0UE . . . E 3 -19.432 10.231 74.955 1 90.44 ? N11 0UE 901 A 1 HETATM 9 C C11 0UE . . . E 3 -19.994 9.482 74.056 1 84.61 ? C11 0UE 901 A 1 HETATM 10 C C12 0UE . . . E 3 -19.411 8.934 72.822 1 81.26 ? C12 0UE 901 A 1 HETATM 11 C C13 0UE . . . E 3 -19.084 7.466 72.95 1 79.79 ? C13 0UE 901 A 1 HETATM 12 C C14 0UE . . . E 3 -19.378 6.929 74.318 1 81.5 ? C14 0UE 901 A 1 HETATM 13 O O13 0UE . . . E 3 -18.844 7.38 75.305 1 103.3 ? O13 0UE 901 A 1 HETATM 14 N N12 0UE . . . E 3 -20.238 5.921 74.385 1 67.1 ? N12 0UE 901 A 1 HETATM 15 C C15 0UE . . . E 3 -21.26 5.761 75.407 1 59.03 ? C15 0UE 901 A 1 HETATM 16 C C16 0UE . . . E 3 -20.81 6.217 76.749 1 61.26 ? C16 0UE 901 A 1 HETATM 17 C C18 0UE . . . E 3 -23.152 7.119 76.725 1 63.97 ? C18 0UE 901 A 1 HETATM 18 C C17 0UE . . . E 3 -21.898 6.92 77.523 1 64.4 ? C17 0UE 901 A 1 HETATM 19 C C19 0UE . . . E 3 -23.849 8.385 77.088 1 65.84 ? C19 0UE 901 A 1 HETATM 20 N N21 0UE . . . E 3 -23.506 9.466 76.197 1 74.4 ? N21 0UE 901 A 1 HETATM 21 C C21 0UE . . . E 3 -24.103 9.661 74.993 1 78.92 ? C21 0UE 901 A 1 HETATM 22 C C22 0UE . . . E 3 -25.283 8.909 74.527 1 75.21 ? C22 0UE 901 A 1 HETATM 23 C C23 0UE . . . E 3 -25.867 9.499 73.273 1 79.91 ? C23 0UE 901 A 1 HETATM 24 C C24 0UE . . . E 3 -26.594 10.781 73.535 1 95.77 ? C24 0UE 901 A 1 HETATM 25 O O23 0UE . . . E 3 -27.35 10.903 74.466 1 140.49 ? O23 0UE 901 A 1 HETATM 26 N N22 0UE . . . E 3 -26.357 11.778 72.696 1 89.67 ? N22 0UE 901 A 1 HETATM 27 C C25 0UE . . . E 3 -26.72 13.15 72.992 1 97.73 ? C25 0UE 901 A 1 HETATM 28 C C26 0UE . . . E 3 -26.336 13.536 74.377 1 99.38 ? C26 0UE 901 A 1 HETATM 29 C C27 0UE . . . E 3 -25.337 14.66 74.422 1 91.06 ? C27 0UE 901 A 1 HETATM 30 C C28 0UE . . . E 3 -24.088 14.406 73.618 1 86.24 ? C28 0UE 901 A 1 HETATM 31 C C29 0UE . . . E 3 -22.856 14.69 74.421 1 76.67 ? C29 0UE 901 A 1 HETATM 32 N N31 0UE . . . E 3 -22.226 13.481 74.885 1 67.79 ? N31 0UE 901 A 1 HETATM 33 C C31 0UE . . . E 3 -21.586 13.375 76.095 1 64.71 ? C31 0UE 901 A 1 HETATM 34 C C32 0UE . . . E 3 -20.957 14.504 76.833 1 61.77 ? C32 0UE 901 A 1 HETATM 35 C C39 0UE . . . E 3 -18.465 9.965 76.002 1 82.26 ? C39 0UE 901 A 1 HETATM 36 C C40 0UE . . . E 3 -17.185 10.706 75.783 1 81.78 ? C40 0UE 901 A 1 HETATM 37 C C41 0UE . . . E 3 -17.091 11.916 76.668 1 86.92 ? C41 0UE 901 A 1 HETATM 38 C C42 0UE . . . E 3 -16.085 11.756 77.773 1 91.28 ? C42 0UE 901 A 1 HETATM 39 C C43 0UE . . . E 3 -15.868 13.024 78.567 1 89.34 ? C43 0UE 901 A 1 HETATM 40 N N44 0UE . . . E 3 -16.445 14.167 77.886 1 92.08 ? N44 0UE 901 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #