data_6I9K # _model_server_result.job_id uXzWjczeKa2vv0yw-LxDMw _model_server_result.datetime_utc '2024-12-11 06:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6I9K # _exptl.entry_id 6I9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.55 _cell.angle_gamma 90 _cell.entry_id 6I9K _cell.length_a 50.955 _cell.length_b 130.638 _cell.length_c 77.309 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 123 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A NZ LYS 321 A LYS 321 1_555 B C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 341 n n C1 C6 RET sing 342 n n C1 C16 RET sing 343 n n C1 C17 RET sing 344 n n C2 C3 RET sing 345 n n C2 H21 RET sing 346 n n C2 H22 RET sing 347 n n C3 C4 RET sing 348 n n C3 H31 RET sing 349 n n C3 H32 RET sing 350 n n C4 C5 RET sing 351 n n C4 H41 RET sing 352 n n C4 H42 RET sing 353 n n C5 C6 RET doub 354 n n C5 C18 RET sing 355 n n C6 C7 RET sing 356 n n C7 C8 RET doub 357 e n C7 H7 RET sing 358 n n C8 C9 RET sing 359 n n C8 H8 RET sing 360 n n C9 C10 RET doub 361 e n C9 C19 RET sing 362 n n C10 C11 RET sing 363 n n C10 H10 RET sing 364 n n C11 C12 RET doub 365 e n C11 H11 RET sing 366 n n C12 C13 RET sing 367 n n C12 H12 RET sing 368 n n C13 C14 RET doub 369 e n C13 C20 RET sing 370 n n C14 C15 RET sing 371 n n C14 H14 RET sing 372 n n C15 O1 RET doub 373 n n C15 H15 RET sing 374 n n C16 H161 RET sing 375 n n C16 H162 RET sing 376 n n C16 H163 RET sing 377 n n C17 H171 RET sing 378 n n C17 H172 RET sing 379 n n C17 H173 RET sing 380 n n C18 H181 RET sing 381 n n C18 H182 RET sing 382 n n C18 H183 RET sing 383 n n C19 H191 RET sing 384 n n C19 H192 RET sing 385 n n C19 H193 RET sing 386 n n C20 H201 RET sing 387 n n C20 H202 RET sing 388 n n C20 H203 RET sing 389 n n # _atom_sites.entry_id 6I9K _atom_sites.fract_transf_matrix[1][1] 0.019625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 401 401 RET RET . C 3 OLC A 1 402 1 OLC MON . D 3 OLC A 1 403 2 OLC MON . E 3 OLC A 1 404 3 OLC MON . F 3 OLC A 1 405 4 OLC MON . G 3 OLC A 1 406 5 OLC MON . H 3 OLC A 1 407 6 OLC MON . I 3 OLC A 1 408 7 OLC MON . J 3 OLC A 1 409 8 OLC MON . K 3 OLC A 1 410 9 OLC MON . L 3 OLC A 1 411 10 OLC MON . M 3 OLC A 1 412 11 OLC MON . N 4 HOH A 1 501 46 HOH HOH . N 4 HOH A 2 502 34 HOH HOH . N 4 HOH A 3 503 28 HOH HOH . N 4 HOH A 4 504 8 HOH HOH . N 4 HOH A 5 505 41 HOH HOH . N 4 HOH A 6 506 36 HOH HOH . N 4 HOH A 7 507 26 HOH HOH . N 4 HOH A 8 508 39 HOH HOH . N 4 HOH A 9 509 1 HOH HOH . N 4 HOH A 10 510 54 HOH HOH . N 4 HOH A 11 511 42 HOH HOH . N 4 HOH A 12 512 32 HOH HOH . N 4 HOH A 13 513 16 HOH HOH . N 4 HOH A 14 514 18 HOH HOH . N 4 HOH A 15 515 7 HOH HOH . N 4 HOH A 16 516 17 HOH HOH . N 4 HOH A 17 517 49 HOH HOH . N 4 HOH A 18 518 25 HOH HOH . N 4 HOH A 19 519 33 HOH HOH . N 4 HOH A 20 520 22 HOH HOH . N 4 HOH A 21 521 40 HOH HOH . N 4 HOH A 22 522 2 HOH HOH . N 4 HOH A 23 523 51 HOH HOH . N 4 HOH A 24 524 30 HOH HOH . N 4 HOH A 25 525 24 HOH HOH . N 4 HOH A 26 526 43 HOH HOH . N 4 HOH A 27 527 20 HOH HOH . N 4 HOH A 28 528 45 HOH HOH . N 4 HOH A 29 529 19 HOH HOH . N 4 HOH A 30 530 29 HOH HOH . N 4 HOH A 31 531 21 HOH HOH . N 4 HOH A 32 532 27 HOH HOH . N 4 HOH A 33 533 14 HOH HOH . N 4 HOH A 34 534 15 HOH HOH . N 4 HOH A 35 535 37 HOH HOH . N 4 HOH A 36 536 35 HOH HOH . N 4 HOH A 37 537 44 HOH HOH . N 4 HOH A 38 538 23 HOH HOH . N 4 HOH A 39 539 4 HOH HOH . N 4 HOH A 40 540 5 HOH HOH . N 4 HOH A 41 541 50 HOH HOH . N 4 HOH A 42 542 6 HOH HOH . N 4 HOH A 43 543 10 HOH HOH . N 4 HOH A 44 544 3 HOH HOH . N 4 HOH A 45 545 9 HOH HOH . N 4 HOH A 46 546 47 HOH HOH . N 4 HOH A 47 547 31 HOH HOH . N 4 HOH A 48 548 48 HOH HOH . N 4 HOH A 49 549 38 HOH HOH . N 4 HOH A 50 550 13 HOH HOH . N 4 HOH A 51 551 52 HOH HOH . N 4 HOH A 52 552 53 HOH HOH . N 4 HOH A 53 553 11 HOH HOH . N 4 HOH A 54 554 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 9.443 81.331 20.836 1 36.34 ? C1 RET 401 A 1 HETATM 2 C C2 RET . . . B 2 10.541 80.438 21.428 1 36.43 ? C2 RET 401 A 1 HETATM 3 C C3 RET . . . B 2 10.12 78.992 21.593 1 35.08 ? C3 RET 401 A 1 HETATM 4 C C4 RET . . . B 2 9.674 78.413 20.277 1 32.5 ? C4 RET 401 A 1 HETATM 5 C C5 RET . . . B 2 8.708 79.294 19.538 1 33.51 ? C5 RET 401 A 1 HETATM 6 C C6 RET . . . B 2 8.693 80.628 19.702 1 36.91 ? C6 RET 401 A 1 HETATM 7 C C7 RET . . . B 2 7.975 81.552 18.875 1 32.15 ? C7 RET 401 A 1 HETATM 8 C C8 RET . . . B 2 7.819 81.65 17.557 1 36.63 ? C8 RET 401 A 1 HETATM 9 C C9 RET . . . B 2 7.098 82.731 16.91 1 36.58 ? C9 RET 401 A 1 HETATM 10 C C10 RET . . . B 2 7.042 82.793 15.561 1 38.26 ? C10 RET 401 A 1 HETATM 11 C C11 RET . . . B 2 8.117 82.64 14.657 1 41.97 ? C11 RET 401 A 1 HETATM 12 C C12 RET . . . B 2 7.995 82.662 13.329 1 42.31 ? C12 RET 401 A 1 HETATM 13 C C13 RET . . . B 2 9.086 82.51 12.399 1 37.06 ? C13 RET 401 A 1 HETATM 14 C C14 RET . . . B 2 8.838 82.431 11.075 1 40.01 ? C14 RET 401 A 1 HETATM 15 C C15 RET . . . B 2 9.97 82.307 10.2 1 37.24 ? C15 RET 401 A 1 HETATM 16 C C16 RET . . . B 2 8.466 81.727 21.945 1 37.12 ? C16 RET 401 A 1 HETATM 17 C C17 RET . . . B 2 10.116 82.6 20.306 1 37.13 ? C17 RET 401 A 1 HETATM 18 C C18 RET . . . B 2 7.789 78.535 18.616 1 29.99 ? C18 RET 401 A 1 HETATM 19 C C19 RET . . . B 2 6.496 83.779 17.789 1 32.25 ? C19 RET 401 A 1 HETATM 20 C C20 RET . . . B 2 10.473 82.452 12.967 1 40.41 ? C20 RET 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #