data_6I9K # _model_server_result.job_id jZgudVZiHQaNf9cf7qtXPw _model_server_result.datetime_utc '2024-11-21 13:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":409}' # _entry.id 6I9K # _exptl.entry_id 6I9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.55 _cell.angle_gamma 90 _cell.entry_id 6I9K _cell.length_a 50.955 _cell.length_b 130.638 _cell.length_c 77.309 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 123 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A NZ LYS 321 A LYS 321 1_555 B C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 6I9K _atom_sites.fract_transf_matrix[1][1] 0.019625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 401 401 RET RET . C 3 OLC A 1 402 1 OLC MON . D 3 OLC A 1 403 2 OLC MON . E 3 OLC A 1 404 3 OLC MON . F 3 OLC A 1 405 4 OLC MON . G 3 OLC A 1 406 5 OLC MON . H 3 OLC A 1 407 6 OLC MON . I 3 OLC A 1 408 7 OLC MON . J 3 OLC A 1 409 8 OLC MON . K 3 OLC A 1 410 9 OLC MON . L 3 OLC A 1 411 10 OLC MON . M 3 OLC A 1 412 11 OLC MON . N 4 HOH A 1 501 46 HOH HOH . N 4 HOH A 2 502 34 HOH HOH . N 4 HOH A 3 503 28 HOH HOH . N 4 HOH A 4 504 8 HOH HOH . N 4 HOH A 5 505 41 HOH HOH . N 4 HOH A 6 506 36 HOH HOH . N 4 HOH A 7 507 26 HOH HOH . N 4 HOH A 8 508 39 HOH HOH . N 4 HOH A 9 509 1 HOH HOH . N 4 HOH A 10 510 54 HOH HOH . N 4 HOH A 11 511 42 HOH HOH . N 4 HOH A 12 512 32 HOH HOH . N 4 HOH A 13 513 16 HOH HOH . N 4 HOH A 14 514 18 HOH HOH . N 4 HOH A 15 515 7 HOH HOH . N 4 HOH A 16 516 17 HOH HOH . N 4 HOH A 17 517 49 HOH HOH . N 4 HOH A 18 518 25 HOH HOH . N 4 HOH A 19 519 33 HOH HOH . N 4 HOH A 20 520 22 HOH HOH . N 4 HOH A 21 521 40 HOH HOH . N 4 HOH A 22 522 2 HOH HOH . N 4 HOH A 23 523 51 HOH HOH . N 4 HOH A 24 524 30 HOH HOH . N 4 HOH A 25 525 24 HOH HOH . N 4 HOH A 26 526 43 HOH HOH . N 4 HOH A 27 527 20 HOH HOH . N 4 HOH A 28 528 45 HOH HOH . N 4 HOH A 29 529 19 HOH HOH . N 4 HOH A 30 530 29 HOH HOH . N 4 HOH A 31 531 21 HOH HOH . N 4 HOH A 32 532 27 HOH HOH . N 4 HOH A 33 533 14 HOH HOH . N 4 HOH A 34 534 15 HOH HOH . N 4 HOH A 35 535 37 HOH HOH . N 4 HOH A 36 536 35 HOH HOH . N 4 HOH A 37 537 44 HOH HOH . N 4 HOH A 38 538 23 HOH HOH . N 4 HOH A 39 539 4 HOH HOH . N 4 HOH A 40 540 5 HOH HOH . N 4 HOH A 41 541 50 HOH HOH . N 4 HOH A 42 542 6 HOH HOH . N 4 HOH A 43 543 10 HOH HOH . N 4 HOH A 44 544 3 HOH HOH . N 4 HOH A 45 545 9 HOH HOH . N 4 HOH A 46 546 47 HOH HOH . N 4 HOH A 47 547 31 HOH HOH . N 4 HOH A 48 548 48 HOH HOH . N 4 HOH A 49 549 38 HOH HOH . N 4 HOH A 50 550 13 HOH HOH . N 4 HOH A 51 551 52 HOH HOH . N 4 HOH A 52 552 53 HOH HOH . N 4 HOH A 53 553 11 HOH HOH . N 4 HOH A 54 554 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . J 3 16.266 64.079 3.403 1 48.18 ? C10 OLC 409 A 1 HETATM 2 C C9 OLC . . . J 3 15.788 62.904 3.827 1 49.96 ? C9 OLC 409 A 1 HETATM 3 C C11 OLC . . . J 3 16.539 64.51 1.982 1 51.13 ? C11 OLC 409 A 1 HETATM 4 C C8 OLC . . . J 3 15.391 61.714 2.991 1 50.04 ? C8 OLC 409 A 1 HETATM 5 C C12 OLC . . . J 3 15.283 64.781 1.141 1 49.11 ? C12 OLC 409 A 1 HETATM 6 C C7 OLC . . . J 3 14.125 60.985 3.488 1 47.03 ? C7 OLC 409 A 1 HETATM 7 C C6 OLC . . . J 3 14.342 60.076 4.687 1 48.77 ? C6 OLC 409 A 1 HETATM 8 C C5 OLC . . . J 3 13.115 59.262 5.078 1 51.07 ? C5 OLC 409 A 1 HETATM 9 C C4 OLC . . . J 3 13.406 58.178 6.11 1 51.89 ? C4 OLC 409 A 1 HETATM 10 C C3 OLC . . . J 3 12.166 57.419 6.558 1 56.1 ? C3 OLC 409 A 1 HETATM 11 C C2 OLC . . . J 3 12.434 56.33 7.59 1 58.28 ? C2 OLC 409 A 1 HETATM 12 C C1 OLC . . . J 3 11.158 55.768 8.209 1 55.31 ? C1 OLC 409 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #