data_6I9M # _model_server_result.job_id fIx4bacLx6dbDwZmlCafsA _model_server_result.datetime_utc '2024-11-26 16:33:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6I9M # _exptl.entry_id 6I9M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I9M _cell.length_a 49.571 _cell.length_b 64.674 _cell.length_c 77.437 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 161 A HIS 321 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OD2 ASP 163 A ASP 323 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 A NE2 HIS 240 A HIS 400 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 B MN MN . A MN 501 1_555 C O3 2HG . A 2HG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc5 B MN MN . A MN 501 1_555 C O1 2HG . A 2HG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 B MN MN . A MN 501 1_555 H O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 6I9M _atom_sites.fract_transf_matrix[1][1] 0.020173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 2HG A 1 502 601 2HG 2HG . D 4 TRS A 1 503 701 TRS TRS . E 5 GOL A 1 504 702 GOL GOL . F 5 GOL A 1 505 703 GOL GOL . G 5 GOL A 1 506 704 GOL GOL . H 6 HOH A 1 601 172 HOH HOH . H 6 HOH A 2 602 136 HOH HOH . H 6 HOH A 3 603 182 HOH HOH . H 6 HOH A 4 604 154 HOH HOH . H 6 HOH A 5 605 81 HOH HOH . H 6 HOH A 6 606 138 HOH HOH . H 6 HOH A 7 607 143 HOH HOH . H 6 HOH A 8 608 58 HOH HOH . H 6 HOH A 9 609 147 HOH HOH . H 6 HOH A 10 610 125 HOH HOH . H 6 HOH A 11 611 122 HOH HOH . H 6 HOH A 12 612 162 HOH HOH . H 6 HOH A 13 613 24 HOH HOH . H 6 HOH A 14 614 141 HOH HOH . H 6 HOH A 15 615 128 HOH HOH . H 6 HOH A 16 616 153 HOH HOH . H 6 HOH A 17 617 92 HOH HOH . H 6 HOH A 18 618 17 HOH HOH . H 6 HOH A 19 619 106 HOH HOH . H 6 HOH A 20 620 144 HOH HOH . H 6 HOH A 21 621 137 HOH HOH . H 6 HOH A 22 622 112 HOH HOH . H 6 HOH A 23 623 23 HOH HOH . H 6 HOH A 24 624 12 HOH HOH . H 6 HOH A 25 625 11 HOH HOH . H 6 HOH A 26 626 32 HOH HOH . H 6 HOH A 27 627 50 HOH HOH . H 6 HOH A 28 628 48 HOH HOH . H 6 HOH A 29 629 159 HOH HOH . H 6 HOH A 30 630 42 HOH HOH . H 6 HOH A 31 631 75 HOH HOH . H 6 HOH A 32 632 29 HOH HOH . H 6 HOH A 33 633 8 HOH HOH . H 6 HOH A 34 634 25 HOH HOH . H 6 HOH A 35 635 84 HOH HOH . H 6 HOH A 36 636 62 HOH HOH . H 6 HOH A 37 637 7 HOH HOH . H 6 HOH A 38 638 145 HOH HOH . H 6 HOH A 39 639 185 HOH HOH . H 6 HOH A 40 640 4 HOH HOH . H 6 HOH A 41 641 65 HOH HOH . H 6 HOH A 42 642 10 HOH HOH . H 6 HOH A 43 643 74 HOH HOH . H 6 HOH A 44 644 14 HOH HOH . H 6 HOH A 45 645 124 HOH HOH . H 6 HOH A 46 646 19 HOH HOH . H 6 HOH A 47 647 13 HOH HOH . H 6 HOH A 48 648 26 HOH HOH . H 6 HOH A 49 649 60 HOH HOH . H 6 HOH A 50 650 9 HOH HOH . H 6 HOH A 51 651 86 HOH HOH . H 6 HOH A 52 652 181 HOH HOH . H 6 HOH A 53 653 22 HOH HOH . H 6 HOH A 54 654 28 HOH HOH . H 6 HOH A 55 655 44 HOH HOH . H 6 HOH A 56 656 61 HOH HOH . H 6 HOH A 57 657 70 HOH HOH . H 6 HOH A 58 658 184 HOH HOH . H 6 HOH A 59 659 55 HOH HOH . H 6 HOH A 60 660 146 HOH HOH . H 6 HOH A 61 661 156 HOH HOH . H 6 HOH A 62 662 79 HOH HOH . H 6 HOH A 63 663 114 HOH HOH . H 6 HOH A 64 664 109 HOH HOH . H 6 HOH A 65 665 36 HOH HOH . H 6 HOH A 66 666 97 HOH HOH . H 6 HOH A 67 667 57 HOH HOH . H 6 HOH A 68 668 127 HOH HOH . H 6 HOH A 69 669 113 HOH HOH . H 6 HOH A 70 670 102 HOH HOH . H 6 HOH A 71 671 188 HOH HOH . H 6 HOH A 72 672 2 HOH HOH . H 6 HOH A 73 673 177 HOH HOH . H 6 HOH A 74 674 18 HOH HOH . H 6 HOH A 75 675 52 HOH HOH . H 6 HOH A 76 676 116 HOH HOH . H 6 HOH A 77 677 5 HOH HOH . H 6 HOH A 78 678 72 HOH HOH . H 6 HOH A 79 679 33 HOH HOH . H 6 HOH A 80 680 73 HOH HOH . H 6 HOH A 81 681 1 HOH HOH . H 6 HOH A 82 682 27 HOH HOH . H 6 HOH A 83 683 193 HOH HOH . H 6 HOH A 84 684 89 HOH HOH . H 6 HOH A 85 685 142 HOH HOH . H 6 HOH A 86 686 91 HOH HOH . H 6 HOH A 87 687 16 HOH HOH . H 6 HOH A 88 688 20 HOH HOH . H 6 HOH A 89 689 94 HOH HOH . H 6 HOH A 90 690 3 HOH HOH . H 6 HOH A 91 691 132 HOH HOH . H 6 HOH A 92 692 194 HOH HOH . H 6 HOH A 93 693 46 HOH HOH . H 6 HOH A 94 694 83 HOH HOH . H 6 HOH A 95 695 43 HOH HOH . H 6 HOH A 96 696 30 HOH HOH . H 6 HOH A 97 697 108 HOH HOH . H 6 HOH A 98 698 103 HOH HOH . H 6 HOH A 99 699 158 HOH HOH . H 6 HOH A 100 700 82 HOH HOH . H 6 HOH A 101 701 168 HOH HOH . H 6 HOH A 102 702 34 HOH HOH . H 6 HOH A 103 703 126 HOH HOH . H 6 HOH A 104 704 148 HOH HOH . H 6 HOH A 105 705 54 HOH HOH . H 6 HOH A 106 706 169 HOH HOH . H 6 HOH A 107 707 21 HOH HOH . H 6 HOH A 108 708 37 HOH HOH . H 6 HOH A 109 709 51 HOH HOH . H 6 HOH A 110 710 152 HOH HOH . H 6 HOH A 111 711 40 HOH HOH . H 6 HOH A 112 712 157 HOH HOH . H 6 HOH A 113 713 129 HOH HOH . H 6 HOH A 114 714 90 HOH HOH . H 6 HOH A 115 715 93 HOH HOH . H 6 HOH A 116 716 38 HOH HOH . H 6 HOH A 117 717 120 HOH HOH . H 6 HOH A 118 718 77 HOH HOH . H 6 HOH A 119 719 186 HOH HOH . H 6 HOH A 120 720 123 HOH HOH . H 6 HOH A 121 721 59 HOH HOH . H 6 HOH A 122 722 139 HOH HOH . H 6 HOH A 123 723 189 HOH HOH . H 6 HOH A 124 724 47 HOH HOH . H 6 HOH A 125 725 41 HOH HOH . H 6 HOH A 126 726 190 HOH HOH . H 6 HOH A 127 727 15 HOH HOH . H 6 HOH A 128 728 140 HOH HOH . H 6 HOH A 129 729 150 HOH HOH . H 6 HOH A 130 730 45 HOH HOH . H 6 HOH A 131 731 175 HOH HOH . H 6 HOH A 132 732 95 HOH HOH . H 6 HOH A 133 733 135 HOH HOH . H 6 HOH A 134 734 98 HOH HOH . H 6 HOH A 135 735 6 HOH HOH . H 6 HOH A 136 736 35 HOH HOH . H 6 HOH A 137 737 80 HOH HOH . H 6 HOH A 138 738 39 HOH HOH . H 6 HOH A 139 739 104 HOH HOH . H 6 HOH A 140 740 166 HOH HOH . H 6 HOH A 141 741 64 HOH HOH . H 6 HOH A 142 742 149 HOH HOH . H 6 HOH A 143 743 170 HOH HOH . H 6 HOH A 144 744 53 HOH HOH . H 6 HOH A 145 745 117 HOH HOH . H 6 HOH A 146 746 160 HOH HOH . H 6 HOH A 147 747 99 HOH HOH . H 6 HOH A 148 748 76 HOH HOH . H 6 HOH A 149 749 101 HOH HOH . H 6 HOH A 150 750 68 HOH HOH . H 6 HOH A 151 751 67 HOH HOH . H 6 HOH A 152 752 119 HOH HOH . H 6 HOH A 153 753 167 HOH HOH . H 6 HOH A 154 754 71 HOH HOH . H 6 HOH A 155 755 115 HOH HOH . H 6 HOH A 156 756 88 HOH HOH . H 6 HOH A 157 757 49 HOH HOH . H 6 HOH A 158 758 179 HOH HOH . H 6 HOH A 159 759 130 HOH HOH . H 6 HOH A 160 760 78 HOH HOH . H 6 HOH A 161 761 133 HOH HOH . H 6 HOH A 162 762 161 HOH HOH . H 6 HOH A 163 763 31 HOH HOH . H 6 HOH A 164 764 155 HOH HOH . H 6 HOH A 165 765 118 HOH HOH . H 6 HOH A 166 766 164 HOH HOH . H 6 HOH A 167 767 187 HOH HOH . H 6 HOH A 168 768 87 HOH HOH . H 6 HOH A 169 769 163 HOH HOH . H 6 HOH A 170 770 85 HOH HOH . H 6 HOH A 171 771 66 HOH HOH . H 6 HOH A 172 772 69 HOH HOH . H 6 HOH A 173 773 183 HOH HOH . H 6 HOH A 174 774 121 HOH HOH . H 6 HOH A 175 775 100 HOH HOH . H 6 HOH A 176 776 105 HOH HOH . H 6 HOH A 177 777 171 HOH HOH . H 6 HOH A 178 778 111 HOH HOH . H 6 HOH A 179 779 131 HOH HOH . H 6 HOH A 180 780 107 HOH HOH . H 6 HOH A 181 781 110 HOH HOH . H 6 HOH A 182 782 174 HOH HOH . H 6 HOH A 183 783 134 HOH HOH . H 6 HOH A 184 784 63 HOH HOH . H 6 HOH A 185 785 192 HOH HOH . H 6 HOH A 186 786 96 HOH HOH . H 6 HOH A 187 787 191 HOH HOH . H 6 HOH A 188 788 151 HOH HOH . H 6 HOH A 189 789 165 HOH HOH . H 6 HOH A 190 790 178 HOH HOH . H 6 HOH A 191 791 180 HOH HOH . H 6 HOH A 192 792 56 HOH HOH . H 6 HOH A 193 793 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 26.89 -17.672 -10.502 1 46.26 ? C1 GOL 504 A 1 HETATM 2 O O1 GOL . . . E 5 26.213 -16.502 -10.083 1 37.05 ? O1 GOL 504 A 1 HETATM 3 C C2 GOL . . . E 5 28.288 -17.311 -11.006 1 46.94 ? C2 GOL 504 A 1 HETATM 4 O O2 GOL . . . E 5 28.869 -16.292 -10.201 1 49.87 ? O2 GOL 504 A 1 HETATM 5 C C3 GOL . . . E 5 29.146 -18.572 -10.949 1 42.56 ? C3 GOL 504 A 1 HETATM 6 O O3 GOL . . . E 5 30.381 -18.333 -11.589 1 46.06 ? O3 GOL 504 A 1 HETATM 7 H H11 GOL . . . E 5 26.968 -18.37 -9.668 1 55.51 ? H11 GOL 504 A 1 HETATM 8 H H12 GOL . . . E 5 26.326 -18.158 -11.299 1 55.51 ? H12 GOL 504 A 1 HETATM 9 H HO1 GOL . . . E 5 25.296 -16.73 -9.823 1 44.46 ? HO1 GOL 504 A 1 HETATM 10 H H2 GOL . . . E 5 28.217 -16.977 -12.041 1 56.32 ? H2 GOL 504 A 1 HETATM 11 H HO2 GOL . . . E 5 28.936 -16.607 -9.275 1 59.84 ? HO2 GOL 504 A 1 HETATM 12 H H31 GOL . . . E 5 29.318 -18.854 -9.91 1 51.08 ? H31 GOL 504 A 1 HETATM 13 H H32 GOL . . . E 5 28.628 -19.393 -11.443 1 51.08 ? H32 GOL 504 A 1 HETATM 14 H HO3 GOL . . . E 5 30.493 -17.37 -11.735 1 55.27 ? HO3 GOL 504 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #