data_6I9M
#
_model_server_result.job_id            JD_BoxPoy0fwiC-UYMl3GQ 
_model_server_result.datetime_utc      '2024-11-30 01:23:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6i9m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":506}' 
#
_entry.id    6I9M 
#
_exptl.entry_id    6I9M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6I9M 
_cell.length_a            49.571 
_cell.length_b            64.674 
_cell.length_c            77.437 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6I9M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 161 A HIS 321 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc2 A OD2 ASP 163 A ASP 323 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc3 A NE2 HIS 240 A HIS 400 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 B MN MN . A MN 501 1_555 C O3 2HG . A 2HG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc5 B MN MN . A MN 501 1_555 C O1 2HG . A 2HG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc6 B MN MN . A MN 501 1_555 H O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 146 n n 
C1 C2 GOL sing 147 n n 
C1 H11 GOL sing 148 n n 
C1 H12 GOL sing 149 n n 
O1 HO1 GOL sing 150 n n 
C2 O2 GOL sing 151 n n 
C2 C3 GOL sing 152 n n 
C2 H2 GOL sing 153 n n 
O2 HO2 GOL sing 154 n n 
C3 O3 GOL sing 155 n n 
C3 H31 GOL sing 156 n n 
C3 H32 GOL sing 157 n n 
O3 HO3 GOL sing 158 n n 
#
_atom_sites.entry_id                     6I9M 
_atom_sites.fract_transf_matrix[1][1]    0.020173 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015462 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 501 501 MN MN . 
C 3 2HG A 1 502 601 2HG 2HG . 
D 4 TRS A 1 503 701 TRS TRS . 
E 5 GOL A 1 504 702 GOL GOL . 
F 5 GOL A 1 505 703 GOL GOL . 
G 5 GOL A 1 506 704 GOL GOL . 
H 6 HOH A 1 601 172 HOH HOH . 
H 6 HOH A 2 602 136 HOH HOH . 
H 6 HOH A 3 603 182 HOH HOH . 
H 6 HOH A 4 604 154 HOH HOH . 
H 6 HOH A 5 605 81 HOH HOH . 
H 6 HOH A 6 606 138 HOH HOH . 
H 6 HOH A 7 607 143 HOH HOH . 
H 6 HOH A 8 608 58 HOH HOH . 
H 6 HOH A 9 609 147 HOH HOH . 
H 6 HOH A 10 610 125 HOH HOH . 
H 6 HOH A 11 611 122 HOH HOH . 
H 6 HOH A 12 612 162 HOH HOH . 
H 6 HOH A 13 613 24 HOH HOH . 
H 6 HOH A 14 614 141 HOH HOH . 
H 6 HOH A 15 615 128 HOH HOH . 
H 6 HOH A 16 616 153 HOH HOH . 
H 6 HOH A 17 617 92 HOH HOH . 
H 6 HOH A 18 618 17 HOH HOH . 
H 6 HOH A 19 619 106 HOH HOH . 
H 6 HOH A 20 620 144 HOH HOH . 
H 6 HOH A 21 621 137 HOH HOH . 
H 6 HOH A 22 622 112 HOH HOH . 
H 6 HOH A 23 623 23 HOH HOH . 
H 6 HOH A 24 624 12 HOH HOH . 
H 6 HOH A 25 625 11 HOH HOH . 
H 6 HOH A 26 626 32 HOH HOH . 
H 6 HOH A 27 627 50 HOH HOH . 
H 6 HOH A 28 628 48 HOH HOH . 
H 6 HOH A 29 629 159 HOH HOH . 
H 6 HOH A 30 630 42 HOH HOH . 
H 6 HOH A 31 631 75 HOH HOH . 
H 6 HOH A 32 632 29 HOH HOH . 
H 6 HOH A 33 633 8 HOH HOH . 
H 6 HOH A 34 634 25 HOH HOH . 
H 6 HOH A 35 635 84 HOH HOH . 
H 6 HOH A 36 636 62 HOH HOH . 
H 6 HOH A 37 637 7 HOH HOH . 
H 6 HOH A 38 638 145 HOH HOH . 
H 6 HOH A 39 639 185 HOH HOH . 
H 6 HOH A 40 640 4 HOH HOH . 
H 6 HOH A 41 641 65 HOH HOH . 
H 6 HOH A 42 642 10 HOH HOH . 
H 6 HOH A 43 643 74 HOH HOH . 
H 6 HOH A 44 644 14 HOH HOH . 
H 6 HOH A 45 645 124 HOH HOH . 
H 6 HOH A 46 646 19 HOH HOH . 
H 6 HOH A 47 647 13 HOH HOH . 
H 6 HOH A 48 648 26 HOH HOH . 
H 6 HOH A 49 649 60 HOH HOH . 
H 6 HOH A 50 650 9 HOH HOH . 
H 6 HOH A 51 651 86 HOH HOH . 
H 6 HOH A 52 652 181 HOH HOH . 
H 6 HOH A 53 653 22 HOH HOH . 
H 6 HOH A 54 654 28 HOH HOH . 
H 6 HOH A 55 655 44 HOH HOH . 
H 6 HOH A 56 656 61 HOH HOH . 
H 6 HOH A 57 657 70 HOH HOH . 
H 6 HOH A 58 658 184 HOH HOH . 
H 6 HOH A 59 659 55 HOH HOH . 
H 6 HOH A 60 660 146 HOH HOH . 
H 6 HOH A 61 661 156 HOH HOH . 
H 6 HOH A 62 662 79 HOH HOH . 
H 6 HOH A 63 663 114 HOH HOH . 
H 6 HOH A 64 664 109 HOH HOH . 
H 6 HOH A 65 665 36 HOH HOH . 
H 6 HOH A 66 666 97 HOH HOH . 
H 6 HOH A 67 667 57 HOH HOH . 
H 6 HOH A 68 668 127 HOH HOH . 
H 6 HOH A 69 669 113 HOH HOH . 
H 6 HOH A 70 670 102 HOH HOH . 
H 6 HOH A 71 671 188 HOH HOH . 
H 6 HOH A 72 672 2 HOH HOH . 
H 6 HOH A 73 673 177 HOH HOH . 
H 6 HOH A 74 674 18 HOH HOH . 
H 6 HOH A 75 675 52 HOH HOH . 
H 6 HOH A 76 676 116 HOH HOH . 
H 6 HOH A 77 677 5 HOH HOH . 
H 6 HOH A 78 678 72 HOH HOH . 
H 6 HOH A 79 679 33 HOH HOH . 
H 6 HOH A 80 680 73 HOH HOH . 
H 6 HOH A 81 681 1 HOH HOH . 
H 6 HOH A 82 682 27 HOH HOH . 
H 6 HOH A 83 683 193 HOH HOH . 
H 6 HOH A 84 684 89 HOH HOH . 
H 6 HOH A 85 685 142 HOH HOH . 
H 6 HOH A 86 686 91 HOH HOH . 
H 6 HOH A 87 687 16 HOH HOH . 
H 6 HOH A 88 688 20 HOH HOH . 
H 6 HOH A 89 689 94 HOH HOH . 
H 6 HOH A 90 690 3 HOH HOH . 
H 6 HOH A 91 691 132 HOH HOH . 
H 6 HOH A 92 692 194 HOH HOH . 
H 6 HOH A 93 693 46 HOH HOH . 
H 6 HOH A 94 694 83 HOH HOH . 
H 6 HOH A 95 695 43 HOH HOH . 
H 6 HOH A 96 696 30 HOH HOH . 
H 6 HOH A 97 697 108 HOH HOH . 
H 6 HOH A 98 698 103 HOH HOH . 
H 6 HOH A 99 699 158 HOH HOH . 
H 6 HOH A 100 700 82 HOH HOH . 
H 6 HOH A 101 701 168 HOH HOH . 
H 6 HOH A 102 702 34 HOH HOH . 
H 6 HOH A 103 703 126 HOH HOH . 
H 6 HOH A 104 704 148 HOH HOH . 
H 6 HOH A 105 705 54 HOH HOH . 
H 6 HOH A 106 706 169 HOH HOH . 
H 6 HOH A 107 707 21 HOH HOH . 
H 6 HOH A 108 708 37 HOH HOH . 
H 6 HOH A 109 709 51 HOH HOH . 
H 6 HOH A 110 710 152 HOH HOH . 
H 6 HOH A 111 711 40 HOH HOH . 
H 6 HOH A 112 712 157 HOH HOH . 
H 6 HOH A 113 713 129 HOH HOH . 
H 6 HOH A 114 714 90 HOH HOH . 
H 6 HOH A 115 715 93 HOH HOH . 
H 6 HOH A 116 716 38 HOH HOH . 
H 6 HOH A 117 717 120 HOH HOH . 
H 6 HOH A 118 718 77 HOH HOH . 
H 6 HOH A 119 719 186 HOH HOH . 
H 6 HOH A 120 720 123 HOH HOH . 
H 6 HOH A 121 721 59 HOH HOH . 
H 6 HOH A 122 722 139 HOH HOH . 
H 6 HOH A 123 723 189 HOH HOH . 
H 6 HOH A 124 724 47 HOH HOH . 
H 6 HOH A 125 725 41 HOH HOH . 
H 6 HOH A 126 726 190 HOH HOH . 
H 6 HOH A 127 727 15 HOH HOH . 
H 6 HOH A 128 728 140 HOH HOH . 
H 6 HOH A 129 729 150 HOH HOH . 
H 6 HOH A 130 730 45 HOH HOH . 
H 6 HOH A 131 731 175 HOH HOH . 
H 6 HOH A 132 732 95 HOH HOH . 
H 6 HOH A 133 733 135 HOH HOH . 
H 6 HOH A 134 734 98 HOH HOH . 
H 6 HOH A 135 735 6 HOH HOH . 
H 6 HOH A 136 736 35 HOH HOH . 
H 6 HOH A 137 737 80 HOH HOH . 
H 6 HOH A 138 738 39 HOH HOH . 
H 6 HOH A 139 739 104 HOH HOH . 
H 6 HOH A 140 740 166 HOH HOH . 
H 6 HOH A 141 741 64 HOH HOH . 
H 6 HOH A 142 742 149 HOH HOH . 
H 6 HOH A 143 743 170 HOH HOH . 
H 6 HOH A 144 744 53 HOH HOH . 
H 6 HOH A 145 745 117 HOH HOH . 
H 6 HOH A 146 746 160 HOH HOH . 
H 6 HOH A 147 747 99 HOH HOH . 
H 6 HOH A 148 748 76 HOH HOH . 
H 6 HOH A 149 749 101 HOH HOH . 
H 6 HOH A 150 750 68 HOH HOH . 
H 6 HOH A 151 751 67 HOH HOH . 
H 6 HOH A 152 752 119 HOH HOH . 
H 6 HOH A 153 753 167 HOH HOH . 
H 6 HOH A 154 754 71 HOH HOH . 
H 6 HOH A 155 755 115 HOH HOH . 
H 6 HOH A 156 756 88 HOH HOH . 
H 6 HOH A 157 757 49 HOH HOH . 
H 6 HOH A 158 758 179 HOH HOH . 
H 6 HOH A 159 759 130 HOH HOH . 
H 6 HOH A 160 760 78 HOH HOH . 
H 6 HOH A 161 761 133 HOH HOH . 
H 6 HOH A 162 762 161 HOH HOH . 
H 6 HOH A 163 763 31 HOH HOH . 
H 6 HOH A 164 764 155 HOH HOH . 
H 6 HOH A 165 765 118 HOH HOH . 
H 6 HOH A 166 766 164 HOH HOH . 
H 6 HOH A 167 767 187 HOH HOH . 
H 6 HOH A 168 768 87 HOH HOH . 
H 6 HOH A 169 769 163 HOH HOH . 
H 6 HOH A 170 770 85 HOH HOH . 
H 6 HOH A 171 771 66 HOH HOH . 
H 6 HOH A 172 772 69 HOH HOH . 
H 6 HOH A 173 773 183 HOH HOH . 
H 6 HOH A 174 774 121 HOH HOH . 
H 6 HOH A 175 775 100 HOH HOH . 
H 6 HOH A 176 776 105 HOH HOH . 
H 6 HOH A 177 777 171 HOH HOH . 
H 6 HOH A 178 778 111 HOH HOH . 
H 6 HOH A 179 779 131 HOH HOH . 
H 6 HOH A 180 780 107 HOH HOH . 
H 6 HOH A 181 781 110 HOH HOH . 
H 6 HOH A 182 782 174 HOH HOH . 
H 6 HOH A 183 783 134 HOH HOH . 
H 6 HOH A 184 784 63 HOH HOH . 
H 6 HOH A 185 785 192 HOH HOH . 
H 6 HOH A 186 786 96 HOH HOH . 
H 6 HOH A 187 787 191 HOH HOH . 
H 6 HOH A 188 788 151 HOH HOH . 
H 6 HOH A 189 789 165 HOH HOH . 
H 6 HOH A 190 790 178 HOH HOH . 
H 6 HOH A 191 791 180 HOH HOH . 
H 6 HOH A 192 792 56 HOH HOH . 
H 6 HOH A 193 793 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 -1.033 -15.64 -33.18 1 44.2 ? C1 GOL 506 A 1 
HETATM 2 O O1 GOL . . . G 5 -1.15 -16.013 -31.826 1 54.29 ? O1 GOL 506 A 1 
HETATM 3 C C2 GOL . . . G 5 -0.069 -14.468 -33.237 1 48.99 ? C2 GOL 506 A 1 
HETATM 4 O O2 GOL . . . G 5 1.208 -15.012 -33.489 1 51.93 ? O2 GOL 506 A 1 
HETATM 5 C C3 GOL . . . G 5 -0.486 -13.518 -34.349 1 46.67 ? C3 GOL 506 A 1 
HETATM 6 O O3 GOL . . . G 5 0.641 -12.714 -34.623 1 48.89 ? O3 GOL 506 A 1 
HETATM 7 H H11 GOL . . . G 5 -0.651 -16.473 -33.769 1 53.04 ? H11 GOL 506 A 1 
HETATM 8 H H12 GOL . . . G 5 -2.006 -15.348 -33.576 1 53.04 ? H12 GOL 506 A 1 
HETATM 9 H HO1 GOL . . . G 5 -1.817 -16.726 -31.74 1 65.15 ? HO1 GOL 506 A 1 
HETATM 10 H H2 GOL . . . G 5 -0.08 -13.941 -32.283 1 58.78 ? H2 GOL 506 A 1 
HETATM 11 H HO2 GOL . . . G 5 1.194 -15.497 -34.341 1 62.31 ? HO2 GOL 506 A 1 
HETATM 12 H H31 GOL . . . G 5 -0.78 -14.077 -35.238 1 56.01 ? H31 GOL 506 A 1 
HETATM 13 H H32 GOL . . . G 5 -1.325 -12.9 -34.028 1 56.01 ? H32 GOL 506 A 1 
HETATM 14 H HO3 GOL . . . G 5 0.69 -11.987 -33.968 1 58.66 ? HO3 GOL 506 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#