data_6I9X # _model_server_result.job_id rtAYP1Zi1481Koj3hKs9Ew _model_server_result.datetime_utc '2025-02-05 14:54:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6I9X # _exptl.entry_id 6I9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 153.099 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-AZAXANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I9X _cell.length_a 80.234 _cell.length_b 96.114 _cell.length_c 105.389 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.234 96.114 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.234 0 105.389 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.114 105.389 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N SER 2 A SER 1 1_555 A C ACE 1 A ACE 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A O ILE 89 A ILE 88 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc2 A O TYR 92 A TYR 91 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc3 A O ILE 95 A ILE 94 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc4 A OE1 GLU 137 A GLU 136 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc5 D NA NA . A NA 1103 1_555 E O HOH . A HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'C4 H3 N5 O2' _chem_comp.formula_weight 153.099 _chem_comp.id AZA _chem_comp.mon_nstd_flag . _chem_comp.name 8-AZAXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 AZA sing 76 n y N1 C6 AZA sing 77 n y N1 HN1 AZA sing 78 n n C2 O2 AZA doub 79 n n C2 N3 AZA sing 80 n y N3 C4 AZA sing 81 n y N3 HN3 AZA sing 82 n n C4 C5 AZA doub 83 n y C4 N9 AZA sing 84 n y C5 C6 AZA sing 85 n y C5 N7 AZA sing 86 n y C6 O6 AZA doub 87 n n N7 N8 AZA doub 88 n y N8 N9 AZA sing 89 n y N9 HN9 AZA sing 90 n n # _atom_sites.entry_id 6I9X _atom_sites.fract_transf_matrix[1][1] 0.012464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZA A 1 1101 300 AZA AZA . C 3 AR A 1 1102 801 AR AR . D 4 NA A 1 1103 600 NA NA . E 5 HOH A 1 1201 413 HOH HOH . E 5 HOH A 2 1202 392 HOH HOH . E 5 HOH A 3 1203 437 HOH HOH . E 5 HOH A 4 1204 463 HOH HOH . E 5 HOH A 5 1205 481 HOH HOH . E 5 HOH A 6 1206 499 HOH HOH . E 5 HOH A 7 1207 468 HOH HOH . E 5 HOH A 8 1208 500 HOH HOH . E 5 HOH A 9 1209 512 HOH HOH . E 5 HOH A 10 1210 507 HOH HOH . E 5 HOH A 11 1211 405 HOH HOH . E 5 HOH A 12 1212 424 HOH HOH . E 5 HOH A 13 1213 454 HOH HOH . E 5 HOH A 14 1214 520 HOH HOH . E 5 HOH A 15 1215 349 HOH HOH . E 5 HOH A 16 1216 375 HOH HOH . E 5 HOH A 17 1217 494 HOH HOH . E 5 HOH A 18 1218 345 HOH HOH . E 5 HOH A 19 1219 314 HOH HOH . E 5 HOH A 20 1220 457 HOH HOH . E 5 HOH A 21 1221 466 HOH HOH . E 5 HOH A 22 1222 348 HOH HOH . E 5 HOH A 23 1223 346 HOH HOH . E 5 HOH A 24 1224 400 HOH HOH . E 5 HOH A 25 1225 423 HOH HOH . E 5 HOH A 26 1226 327 HOH HOH . E 5 HOH A 27 1227 438 HOH HOH . E 5 HOH A 28 1228 417 HOH HOH . E 5 HOH A 29 1229 491 HOH HOH . E 5 HOH A 30 1230 323 HOH HOH . E 5 HOH A 31 1231 360 HOH HOH . E 5 HOH A 32 1232 433 HOH HOH . E 5 HOH A 33 1233 344 HOH HOH . E 5 HOH A 34 1234 394 HOH HOH . E 5 HOH A 35 1235 354 HOH HOH . E 5 HOH A 36 1236 521 HOH HOH . E 5 HOH A 37 1237 318 HOH HOH . E 5 HOH A 38 1238 497 HOH HOH . E 5 HOH A 39 1239 319 HOH HOH . E 5 HOH A 40 1240 382 HOH HOH . E 5 HOH A 41 1241 325 HOH HOH . E 5 HOH A 42 1242 449 HOH HOH . E 5 HOH A 43 1243 316 HOH HOH . E 5 HOH A 44 1244 447 HOH HOH . E 5 HOH A 45 1245 315 HOH HOH . E 5 HOH A 46 1246 487 HOH HOH . E 5 HOH A 47 1247 305 HOH HOH . E 5 HOH A 48 1248 306 HOH HOH . E 5 HOH A 49 1249 502 HOH HOH . E 5 HOH A 50 1250 410 HOH HOH . E 5 HOH A 51 1251 312 HOH HOH . E 5 HOH A 52 1252 339 HOH HOH . E 5 HOH A 53 1253 461 HOH HOH . E 5 HOH A 54 1254 332 HOH HOH . E 5 HOH A 55 1255 357 HOH HOH . E 5 HOH A 56 1256 406 HOH HOH . E 5 HOH A 57 1257 328 HOH HOH . E 5 HOH A 58 1258 451 HOH HOH . E 5 HOH A 59 1259 470 HOH HOH . E 5 HOH A 60 1260 367 HOH HOH . E 5 HOH A 61 1261 329 HOH HOH . E 5 HOH A 62 1262 439 HOH HOH . E 5 HOH A 63 1263 436 HOH HOH . E 5 HOH A 64 1264 418 HOH HOH . E 5 HOH A 65 1265 373 HOH HOH . E 5 HOH A 66 1266 498 HOH HOH . E 5 HOH A 67 1267 358 HOH HOH . E 5 HOH A 68 1268 446 HOH HOH . E 5 HOH A 69 1269 412 HOH HOH . E 5 HOH A 70 1270 490 HOH HOH . E 5 HOH A 71 1271 307 HOH HOH . E 5 HOH A 72 1272 443 HOH HOH . E 5 HOH A 73 1273 333 HOH HOH . E 5 HOH A 74 1274 524 HOH HOH . E 5 HOH A 75 1275 338 HOH HOH . E 5 HOH A 76 1276 409 HOH HOH . E 5 HOH A 77 1277 317 HOH HOH . E 5 HOH A 78 1278 441 HOH HOH . E 5 HOH A 79 1279 510 HOH HOH . E 5 HOH A 80 1280 430 HOH HOH . E 5 HOH A 81 1281 352 HOH HOH . E 5 HOH A 82 1282 335 HOH HOH . E 5 HOH A 83 1283 309 HOH HOH . E 5 HOH A 84 1284 303 HOH HOH . E 5 HOH A 85 1285 448 HOH HOH . E 5 HOH A 86 1286 509 HOH HOH . E 5 HOH A 87 1287 356 HOH HOH . E 5 HOH A 88 1288 495 HOH HOH . E 5 HOH A 89 1289 361 HOH HOH . E 5 HOH A 90 1290 350 HOH HOH . E 5 HOH A 91 1291 301 HOH HOH . E 5 HOH A 92 1292 511 HOH HOH . E 5 HOH A 93 1293 506 HOH HOH . E 5 HOH A 94 1294 425 HOH HOH . E 5 HOH A 95 1295 440 HOH HOH . E 5 HOH A 96 1296 384 HOH HOH . E 5 HOH A 97 1297 362 HOH HOH . E 5 HOH A 98 1298 343 HOH HOH . E 5 HOH A 99 1299 386 HOH HOH . E 5 HOH A 100 1300 320 HOH HOH . E 5 HOH A 101 1301 404 HOH HOH . E 5 HOH A 102 1302 396 HOH HOH . E 5 HOH A 103 1303 492 HOH HOH . E 5 HOH A 104 1304 353 HOH HOH . E 5 HOH A 105 1305 321 HOH HOH . E 5 HOH A 106 1306 515 HOH HOH . E 5 HOH A 107 1307 324 HOH HOH . E 5 HOH A 108 1308 302 HOH HOH . E 5 HOH A 109 1309 351 HOH HOH . E 5 HOH A 110 1310 368 HOH HOH . E 5 HOH A 111 1311 336 HOH HOH . E 5 HOH A 112 1312 527 HOH HOH . E 5 HOH A 113 1313 381 HOH HOH . E 5 HOH A 114 1314 379 HOH HOH . E 5 HOH A 115 1315 313 HOH HOH . E 5 HOH A 116 1316 389 HOH HOH . E 5 HOH A 117 1317 308 HOH HOH . E 5 HOH A 118 1318 435 HOH HOH . E 5 HOH A 119 1319 371 HOH HOH . E 5 HOH A 120 1320 385 HOH HOH . E 5 HOH A 121 1321 311 HOH HOH . E 5 HOH A 122 1322 401 HOH HOH . E 5 HOH A 123 1323 526 HOH HOH . E 5 HOH A 124 1324 482 HOH HOH . E 5 HOH A 125 1325 403 HOH HOH . E 5 HOH A 126 1326 505 HOH HOH . E 5 HOH A 127 1327 363 HOH HOH . E 5 HOH A 128 1328 414 HOH HOH . E 5 HOH A 129 1329 397 HOH HOH . E 5 HOH A 130 1330 334 HOH HOH . E 5 HOH A 131 1331 493 HOH HOH . E 5 HOH A 132 1332 471 HOH HOH . E 5 HOH A 133 1333 359 HOH HOH . E 5 HOH A 134 1334 444 HOH HOH . E 5 HOH A 135 1335 419 HOH HOH . E 5 HOH A 136 1336 310 HOH HOH . E 5 HOH A 137 1337 416 HOH HOH . E 5 HOH A 138 1338 387 HOH HOH . E 5 HOH A 139 1339 395 HOH HOH . E 5 HOH A 140 1340 391 HOH HOH . E 5 HOH A 141 1341 388 HOH HOH . E 5 HOH A 142 1342 341 HOH HOH . E 5 HOH A 143 1343 374 HOH HOH . E 5 HOH A 144 1344 390 HOH HOH . E 5 HOH A 145 1345 342 HOH HOH . E 5 HOH A 146 1346 370 HOH HOH . E 5 HOH A 147 1347 355 HOH HOH . E 5 HOH A 148 1348 398 HOH HOH . E 5 HOH A 149 1349 489 HOH HOH . E 5 HOH A 150 1350 347 HOH HOH . E 5 HOH A 151 1351 393 HOH HOH . E 5 HOH A 152 1352 428 HOH HOH . E 5 HOH A 153 1353 369 HOH HOH . E 5 HOH A 154 1354 326 HOH HOH . E 5 HOH A 155 1355 503 HOH HOH . E 5 HOH A 156 1356 415 HOH HOH . E 5 HOH A 157 1357 513 HOH HOH . E 5 HOH A 158 1358 508 HOH HOH . E 5 HOH A 159 1359 450 HOH HOH . E 5 HOH A 160 1360 483 HOH HOH . E 5 HOH A 161 1361 486 HOH HOH . E 5 HOH A 162 1362 426 HOH HOH . E 5 HOH A 163 1363 330 HOH HOH . E 5 HOH A 164 1364 427 HOH HOH . E 5 HOH A 165 1365 364 HOH HOH . E 5 HOH A 166 1366 528 HOH HOH . E 5 HOH A 167 1367 464 HOH HOH . E 5 HOH A 168 1368 474 HOH HOH . E 5 HOH A 169 1369 480 HOH HOH . E 5 HOH A 170 1370 432 HOH HOH . E 5 HOH A 171 1371 525 HOH HOH . E 5 HOH A 172 1372 456 HOH HOH . E 5 HOH A 173 1373 459 HOH HOH . E 5 HOH A 174 1374 408 HOH HOH . E 5 HOH A 175 1375 514 HOH HOH . E 5 HOH A 176 1376 383 HOH HOH . E 5 HOH A 177 1377 445 HOH HOH . E 5 HOH A 178 1378 453 HOH HOH . E 5 HOH A 179 1379 304 HOH HOH . E 5 HOH A 180 1380 402 HOH HOH . E 5 HOH A 181 1381 504 HOH HOH . E 5 HOH A 182 1382 477 HOH HOH . E 5 HOH A 183 1383 411 HOH HOH . E 5 HOH A 184 1384 472 HOH HOH . E 5 HOH A 185 1385 407 HOH HOH . E 5 HOH A 186 1386 431 HOH HOH . E 5 HOH A 187 1387 337 HOH HOH . E 5 HOH A 188 1388 442 HOH HOH . E 5 HOH A 189 1389 378 HOH HOH . E 5 HOH A 190 1390 366 HOH HOH . E 5 HOH A 191 1391 380 HOH HOH . E 5 HOH A 192 1392 462 HOH HOH . E 5 HOH A 193 1393 365 HOH HOH . E 5 HOH A 194 1394 517 HOH HOH . E 5 HOH A 195 1395 322 HOH HOH . E 5 HOH A 196 1396 469 HOH HOH . E 5 HOH A 197 1397 484 HOH HOH . E 5 HOH A 198 1398 372 HOH HOH . E 5 HOH A 199 1399 478 HOH HOH . E 5 HOH A 200 1400 501 HOH HOH . E 5 HOH A 201 1401 529 HOH HOH . E 5 HOH A 202 1402 434 HOH HOH . E 5 HOH A 203 1403 518 HOH HOH . E 5 HOH A 204 1404 516 HOH HOH . E 5 HOH A 205 1405 455 HOH HOH . E 5 HOH A 206 1406 422 HOH HOH . E 5 HOH A 207 1407 476 HOH HOH . E 5 HOH A 208 1408 340 HOH HOH . E 5 HOH A 209 1409 452 HOH HOH . E 5 HOH A 210 1410 488 HOH HOH . E 5 HOH A 211 1411 467 HOH HOH . E 5 HOH A 212 1412 475 HOH HOH . E 5 HOH A 213 1413 465 HOH HOH . E 5 HOH A 214 1414 479 HOH HOH . E 5 HOH A 215 1415 429 HOH HOH . E 5 HOH A 216 1416 421 HOH HOH . E 5 HOH A 217 1417 399 HOH HOH . E 5 HOH A 218 1418 420 HOH HOH . E 5 HOH A 219 1419 519 HOH HOH . E 5 HOH A 220 1420 331 HOH HOH . E 5 HOH A 221 1421 522 HOH HOH . E 5 HOH A 222 1422 473 HOH HOH . E 5 HOH A 223 1423 485 HOH HOH . E 5 HOH A 224 1424 460 HOH HOH . E 5 HOH A 225 1425 523 HOH HOH . E 5 HOH A 226 1426 496 HOH HOH . E 5 HOH A 227 1427 458 HOH HOH . E 5 HOH A 228 1428 377 HOH HOH . E 5 HOH A 229 1429 376 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AZA . . . B 2 30.172 27.736 36.706 1 17.85 ? N1 AZA 1101 A 1 HETATM 2 C C2 AZA . . . B 2 29.434 27.506 37.826 1 16.4 ? C2 AZA 1101 A 1 HETATM 3 O O2 AZA . . . B 2 28.309 27.945 37.948 1 19.24 ? O2 AZA 1101 A 1 HETATM 4 N N3 AZA . . . B 2 30.024 26.819 38.86 1 17.85 ? N3 AZA 1101 A 1 HETATM 5 C C4 AZA . . . B 2 31.253 26.325 38.704 1 16.62 ? C4 AZA 1101 A 1 HETATM 6 C C5 AZA . . . B 2 31.967 26.515 37.55 1 16.59 ? C5 AZA 1101 A 1 HETATM 7 C C6 AZA . . . B 2 31.433 27.257 36.452 1 17.4 ? C6 AZA 1101 A 1 HETATM 8 O O6 AZA . . . B 2 32.001 27.574 35.402 1 21.3 ? O6 AZA 1101 A 1 HETATM 9 N N7 AZA . . . B 2 33.184 25.909 37.7 1 18.91 ? N7 AZA 1101 A 1 HETATM 10 N N8 AZA . . . B 2 33.211 25.351 38.871 1 18.88 ? N8 AZA 1101 A 1 HETATM 11 N N9 AZA . . . B 2 32.061 25.587 39.505 1 17.34 ? N9 AZA 1101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #