data_6IA6 # _model_server_result.job_id '_pn4EMQ9tPf9WbqzrmvfiA' _model_server_result.datetime_utc '2024-12-03 10:26:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ia6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6IA6 # _exptl.entry_id 6IA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 735.469 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DESULFO-COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IA6 _cell.length_a 73.54 _cell.length_b 160.74 _cell.length_c 92.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 33 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE2 _struct_conn.ptnr2_label_comp_id FES _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FES _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.308 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H36 N7 O16 P3' _chem_comp.formula_weight 735.469 _chem_comp.id DCA _chem_comp.mon_nstd_flag . _chem_comp.name 'DESULFO-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A DCA sing 83 n y N1A C6A DCA doub 84 n y C2A N3A DCA doub 85 n y C2A H2A DCA sing 86 n n N3A C4A DCA sing 87 n y C4A C5A DCA doub 88 n y C4A N9A DCA sing 89 n y C5A C6A DCA sing 90 n y C5A N7A DCA sing 91 n y C6A N6A DCA sing 92 n n N6A H61A DCA sing 93 n n N6A H62A DCA sing 94 n n N7A C8A DCA doub 95 n y C8A N9A DCA sing 96 n y C8A H8A DCA sing 97 n n N9A C1B DCA sing 98 n n C1B C2B DCA sing 99 n n C1B O4B DCA sing 100 n n C1B H1B DCA sing 101 n n C2B O2B DCA sing 102 n n C2B C3B DCA sing 103 n n C2B H2B DCA sing 104 n n O2B HO2A DCA sing 105 n n C3B O3B DCA sing 106 n n C3B C4B DCA sing 107 n n C3B H3B DCA sing 108 n n O3B P3B DCA sing 109 n n P3B O7A DCA doub 110 n n P3B O8A DCA sing 111 n n P3B O9A DCA sing 112 n n O8A HOA8 DCA sing 113 n n O9A HOA9 DCA sing 114 n n C4B O4B DCA sing 115 n n C4B C5B DCA sing 116 n n C4B H4B DCA sing 117 n n C5B O5B DCA sing 118 n n C5B H51A DCA sing 119 n n C5B H52A DCA sing 120 n n O5B P1A DCA sing 121 n n P1A O1A DCA doub 122 n n P1A O2A DCA sing 123 n n P1A O3A DCA sing 124 n n O2A HOA2 DCA sing 125 n n O3A P2A DCA sing 126 n n P2A O4A DCA doub 127 n n P2A O5A DCA sing 128 n n P2A O6A DCA sing 129 n n O5A HOA5 DCA sing 130 n n O6A CCP DCA sing 131 n n CBP CCP DCA sing 132 n n CBP CDP DCA sing 133 n n CBP CEP DCA sing 134 n n CBP CAP DCA sing 135 n n CCP H121 DCA sing 136 n n CCP H122 DCA sing 137 n n CDP H131 DCA sing 138 n n CDP H132 DCA sing 139 n n CDP H133 DCA sing 140 n n CEP H141 DCA sing 141 n n CEP H142 DCA sing 142 n n CEP H143 DCA sing 143 n n CAP OAP DCA sing 144 n n CAP C9P DCA sing 145 n n CAP H10 DCA sing 146 n n OAP HO1 DCA sing 147 n n C9P O9P DCA doub 148 n n C9P N8P DCA sing 149 n n N8P C7P DCA sing 150 n n N8P HN8 DCA sing 151 n n C7P C6P DCA sing 152 n n C7P H71 DCA sing 153 n n C7P H72 DCA sing 154 n n C6P C5P DCA sing 155 n n C6P H61 DCA sing 156 n n C6P H62 DCA sing 157 n n C5P O5P DCA doub 158 n n C5P N4P DCA sing 159 n n N4P C3P DCA sing 160 n n N4P HN4 DCA sing 161 n n C3P C2P DCA sing 162 n n C3P H31 DCA sing 163 n n C3P H32 DCA sing 164 n n C2P H21 DCA sing 165 n n C2P H22 DCA sing 166 n n C2P H23 DCA sing 167 n n # _atom_sites.entry_id 6IA6 _atom_sites.fract_transf_matrix[1][1] 0.013598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DCA A 1 501 501 DCA DCA . C 3 FES A 1 502 601 FES FES . D 4 PO4 A 1 503 701 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A DCA . . . B 2 -15.894 -39.696 14.1 1 100.01 ? N1A DCA 501 A 1 HETATM 2 C C2A DCA . . . B 2 -15.117 -40.696 14.588 1 110.77 ? C2A DCA 501 A 1 HETATM 3 N N3A DCA . . . B 2 -14.994 -41.854 13.901 1 121.82 ? N3A DCA 501 A 1 HETATM 4 C C4A DCA . . . B 2 -15.645 -42.022 12.723 1 128.75 ? C4A DCA 501 A 1 HETATM 5 C C5A DCA . . . B 2 -16.408 -41.035 12.247 1 124.94 ? C5A DCA 501 A 1 HETATM 6 C C6A DCA . . . B 2 -16.532 -39.853 12.952 1 113.6 ? C6A DCA 501 A 1 HETATM 7 N N6A DCA . . . B 2 -17.314 -38.593 12.653 1 103.56 ? N6A DCA 501 A 1 HETATM 8 N N7A DCA . . . B 2 -16.932 -41.445 11.089 1 129.8 ? N7A DCA 501 A 1 HETATM 9 C C8A DCA . . . B 2 -16.488 -42.686 10.854 1 143.02 ? C8A DCA 501 A 1 HETATM 10 N N9A DCA . . . B 2 -15.695 -43.052 11.862 1 146.32 ? N9A DCA 501 A 1 HETATM 11 C C1B DCA . . . B 2 -14.99 -44.265 12.074 1 156.7 ? C1B DCA 501 A 1 HETATM 12 C C2B DCA . . . B 2 -15.52 -45.331 11.466 1 165.75 ? C2B DCA 501 A 1 HETATM 13 O O2B DCA . . . B 2 -16.385 -46.071 12.393 1 177.14 ? O2B DCA 501 A 1 HETATM 14 C C3B DCA . . . B 2 -14.303 -46.19 11.094 1 178.04 ? C3B DCA 501 A 1 HETATM 15 O O3B DCA . . . B 2 -13.842 -46.883 12.16 1 193.17 ? O3B DCA 501 A 1 HETATM 16 P P3B DCA . . . B 2 -14.421 -48.394 12.412 1 236.17 ? P3B DCA 501 A 1 HETATM 17 O O7A DCA . . . B 2 -13.644 -49.051 13.518 1 191.2 ? O7A DCA 501 A 1 HETATM 18 O O8A DCA . . . B 2 -15.861 -48.312 12.795 1 176.7 ? O8A DCA 501 A 1 HETATM 19 O O9A DCA . . . B 2 -14.286 -49.185 11.184 1 184.73 ? O9A DCA 501 A 1 HETATM 20 C C4B DCA . . . B 2 -13.251 -45.093 10.656 1 155.55 ? C4B DCA 501 A 1 HETATM 21 O O4B DCA . . . B 2 -13.459 -44.106 11.485 1 152.81 ? O4B DCA 501 A 1 HETATM 22 C C5B DCA . . . B 2 -13.516 -44.619 9.201 1 145.28 ? C5B DCA 501 A 1 HETATM 23 O O5B DCA . . . B 2 -12.693 -45.362 8.269 1 163.24 ? O5B DCA 501 A 1 HETATM 24 P P1A DCA . . . B 2 -11.717 -44.522 7.181 1 138.25 ? P1A DCA 501 A 1 HETATM 25 O O1A DCA . . . B 2 -11.036 -43.317 7.888 1 118.06 ? O1A DCA 501 A 1 HETATM 26 O O2A DCA . . . B 2 -10.632 -45.463 6.65 1 109.94 ? O2A DCA 501 A 1 HETATM 27 O O3A DCA . . . B 2 -12.599 -43.981 5.949 1 107.43 ? O3A DCA 501 A 1 HETATM 28 P P2A DCA . . . B 2 -14.228 -43.748 5.988 1 156.27 ? P2A DCA 501 A 1 HETATM 29 O O4A DCA . . . B 2 -14.738 -43.609 4.592 1 129.33 ? O4A DCA 501 A 1 HETATM 30 O O5A DCA . . . B 2 -14.909 -44.941 6.656 1 150.74 ? O5A DCA 501 A 1 HETATM 31 O O6A DCA . . . B 2 -14.579 -42.379 6.824 1 136.23 ? O6A DCA 501 A 1 HETATM 32 C CBP DCA . . . B 2 -15.072 -39.984 6.792 1 106.14 ? CBP DCA 501 A 1 HETATM 33 C CCP DCA . . . B 2 -14.11 -41.123 6.315 1 114.37 ? CCP DCA 501 A 1 HETATM 34 C CDP DCA . . . B 2 -14.669 -38.659 6.097 1 102.05 ? CDP DCA 501 A 1 HETATM 35 C CEP DCA . . . B 2 -14.934 -39.806 8.325 1 100.43 ? CEP DCA 501 A 1 HETATM 36 C CAP DCA . . . B 2 -16.536 -40.366 6.414 1 115.66 ? CAP DCA 501 A 1 HETATM 37 O OAP DCA . . . B 2 -17.071 -41.164 7.389 1 130.5 ? OAP DCA 501 A 1 HETATM 38 C C9P DCA . . . B 2 -17.404 -39.085 6.268 1 97.09 ? C9P DCA 501 A 1 HETATM 39 O O9P DCA . . . B 2 -17.781 -38.776 5.261 1 88.09 ? O9P DCA 501 A 1 HETATM 40 N N8P DCA . . . B 2 -17.734 -38.253 7.485 1 112.69 ? N8P DCA 501 A 1 HETATM 41 C C7P DCA . . . B 2 -18.529 -37.072 7.348 1 102.43 ? C7P DCA 501 A 1 HETATM 42 C C6P DCA . . . B 2 -18.036 -36.032 8.358 1 99.5 ? C6P DCA 501 A 1 HETATM 43 C C5P DCA . . . B 2 -16.719 -35.428 7.909 1 105.03 ? C5P DCA 501 A 1 HETATM 44 O O5P DCA . . . B 2 -15.688 -35.908 8.25 1 97.47 ? O5P DCA 501 A 1 HETATM 45 N N4P DCA . . . B 2 -16.725 -34.209 7.036 1 124.99 ? N4P DCA 501 A 1 HETATM 46 C C3P DCA . . . B 2 -15.439 -33.602 6.594 1 109.87 ? C3P DCA 501 A 1 HETATM 47 C C2P DCA . . . B 2 -15.758 -32.379 5.598 1 69.91 ? C2P DCA 501 A 1 HETATM 48 H H2A DCA . . . B 2 -14.669 -40.584 15.395 1 134.17 ? H2A DCA 501 A 1 HETATM 49 H H61A DCA . . . B 2 -18.086 -38.472 13.012 1 125.52 ? H61A DCA 501 A 1 HETATM 50 H H62A DCA . . . B 2 -16.986 -38 12.123 1 125.52 ? H62A DCA 501 A 1 HETATM 51 H H8A DCA . . . B 2 -16.697 -43.206 10.112 1 172.87 ? H8A DCA 501 A 1 HETATM 52 H H1B DCA . . . B 2 -14.997 -44.465 13.023 1 189.28 ? H1B DCA 501 A 1 HETATM 53 H H2B DCA . . . B 2 -16.02 -45.065 10.679 1 200.15 ? H2B DCA 501 A 1 HETATM 54 H HO2A DCA . . . B 2 -15.943 -46.275 13.09 1 213.81 ? HO2A DCA 501 A 1 HETATM 55 H H3B DCA . . . B 2 -14.509 -46.818 10.384 1 214.89 ? H3B DCA 501 A 1 HETATM 56 H H4B DCA . . . B 2 -12.349 -45.441 10.729 1 187.9 ? H4B DCA 501 A 1 HETATM 57 H H51A DCA . . . B 2 -13.306 -43.674 9.13 1 175.58 ? H51A DCA 501 A 1 HETATM 58 H H52A DCA . . . B 2 -14.451 -44.759 8.984 1 175.58 ? H52A DCA 501 A 1 HETATM 59 H H121 DCA . . . B 2 -14.096 -41.15 5.345 1 138.49 ? H121 DCA 501 A 1 HETATM 60 H H122 DCA . . . B 2 -13.215 -40.951 6.648 1 138.49 ? H122 DCA 501 A 1 HETATM 61 H H131 DCA . . . B 2 -13.702 -38.578 6.093 1 123.71 ? H131 DCA 501 A 1 HETATM 62 H H132 DCA . . . B 2 -14.997 -38.66 5.184 1 123.71 ? H132 DCA 501 A 1 HETATM 63 H H133 DCA . . . B 2 -15.054 -37.911 6.578 1 123.71 ? H133 DCA 501 A 1 HETATM 64 H H141 DCA . . . B 2 -15.483 -39.06 8.614 1 121.76 ? H141 DCA 501 A 1 HETATM 65 H H142 DCA . . . B 2 -15.225 -40.615 8.772 1 121.76 ? H142 DCA 501 A 1 HETATM 66 H H143 DCA . . . B 2 -14.006 -39.629 8.547 1 121.76 ? H143 DCA 501 A 1 HETATM 67 H H10 DCA . . . B 2 -16.524 -40.842 5.568 1 140.04 ? H10 DCA 501 A 1 HETATM 68 H HO1 DCA . . . B 2 -17.607 -41.72 7.036 1 157.85 ? HO1 DCA 501 A 1 HETATM 69 H HN8 DCA . . . B 2 -17.445 -38.488 8.26 1 136.48 ? HN8 DCA 501 A 1 HETATM 70 H H71 DCA . . . B 2 -18.441 -36.72 6.448 1 124.17 ? H71 DCA 501 A 1 HETATM 71 H H72 DCA . . . B 2 -19.46 -37.281 7.523 1 124.17 ? H72 DCA 501 A 1 HETATM 72 H H61 DCA . . . B 2 -17.912 -36.459 9.221 1 120.65 ? H61 DCA 501 A 1 HETATM 73 H H62 DCA . . . B 2 -18.697 -35.328 8.44 1 120.65 ? H62 DCA 501 A 1 HETATM 74 H HN4 DCA . . . B 2 -17.472 -33.862 6.79 1 151.24 ? HN4 DCA 501 A 1 HETATM 75 H H31 DCA . . . B 2 -14.906 -34.268 6.133 1 133.09 ? H31 DCA 501 A 1 HETATM 76 H H32 DCA . . . B 2 -14.952 -33.275 7.366 1 133.09 ? H32 DCA 501 A 1 HETATM 77 H H21 DCA . . . B 2 -14.965 -31.832 5.492 1 85.14 ? H21 DCA 501 A 1 HETATM 78 H H22 DCA . . . B 2 -16.476 -31.84 5.966 1 85.14 ? H22 DCA 501 A 1 HETATM 79 H H23 DCA . . . B 2 -16.027 -32.727 4.733 1 85.14 ? H23 DCA 501 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 79 #