data_6IA7 # _model_server_result.job_id coLX08xA7MQxlzXQ7CrlUQ _model_server_result.datetime_utc '2025-07-05 00:18:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ia7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6IA7 # _exptl.entry_id 6IA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IA7 _cell.length_a 55.845 _cell.length_b 55.845 _cell.length_c 263.443 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 23 A SER 19 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc2 A O SER 182 A SER 178 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc3 C O1G GTP . A GTP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc4 C O1B GTP . A GTP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 D MG MG . A MG 302 1_555 H O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc6 E CA CA . A CA 303 1_555 H O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc7 E CA CA . A CA 303 1_555 H O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc8 E CA CA . A CA 303 1_555 B O SER 182 B SER 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc9 E CA CA . A CA 303 1_555 I O HOH . B HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc10 B OG SER 23 B SER 19 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc11 F O3G GTP . B GTP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc12 F O2B GTP . B GTP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 6IA7 _atom_sites.fract_transf_matrix[1][1] 0.017907 _atom_sites.fract_transf_matrix[1][2] 0.010338 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP A 1 301 301 GTP GTP . D 3 MG A 1 302 302 MG MG . E 4 CA A 1 303 1 CA CA . F 2 GTP B 1 301 301 GTP GTP . G 3 MG B 1 302 302 MG MG . H 5 HOH A 1 401 25 HOH HOH . H 5 HOH A 2 402 7 HOH HOH . H 5 HOH A 3 403 44 HOH HOH . H 5 HOH A 4 404 15 HOH HOH . H 5 HOH A 5 405 5 HOH HOH . H 5 HOH A 6 406 58 HOH HOH . H 5 HOH A 7 407 20 HOH HOH . H 5 HOH A 8 408 63 HOH HOH . H 5 HOH A 9 409 21 HOH HOH . H 5 HOH A 10 410 3 HOH HOH . H 5 HOH A 11 411 27 HOH HOH . H 5 HOH A 12 412 17 HOH HOH . H 5 HOH A 13 413 64 HOH HOH . H 5 HOH A 14 414 67 HOH HOH . H 5 HOH A 15 415 6 HOH HOH . H 5 HOH A 16 416 36 HOH HOH . H 5 HOH A 17 417 55 HOH HOH . H 5 HOH A 18 418 38 HOH HOH . H 5 HOH A 19 419 41 HOH HOH . H 5 HOH A 20 420 68 HOH HOH . H 5 HOH A 21 421 66 HOH HOH . H 5 HOH A 22 422 70 HOH HOH . H 5 HOH A 23 423 69 HOH HOH . H 5 HOH A 24 424 49 HOH HOH . H 5 HOH A 25 425 52 HOH HOH . H 5 HOH A 26 426 65 HOH HOH . I 5 HOH B 1 401 24 HOH HOH . I 5 HOH B 2 402 48 HOH HOH . I 5 HOH B 3 403 16 HOH HOH . I 5 HOH B 4 404 2 HOH HOH . I 5 HOH B 5 405 35 HOH HOH . I 5 HOH B 6 406 1 HOH HOH . I 5 HOH B 7 407 22 HOH HOH . I 5 HOH B 8 408 34 HOH HOH . I 5 HOH B 9 409 28 HOH HOH . I 5 HOH B 10 410 59 HOH HOH . I 5 HOH B 11 411 9 HOH HOH . I 5 HOH B 12 412 53 HOH HOH . I 5 HOH B 13 413 61 HOH HOH . I 5 HOH B 14 414 51 HOH HOH . I 5 HOH B 15 415 62 HOH HOH . I 5 HOH B 16 416 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 2 -21.402 -12.789 -12.671 1 54.93 ? PG GTP 301 A 1 HETATM 2 O O1G GTP . . . C 2 -21.654 -13.462 -14.009 1 54.1 ? O1G GTP 301 A 1 HETATM 3 O O2G GTP . . . C 2 -20.391 -13.575 -11.874 1 57.13 ? O2G GTP 301 A 1 HETATM 4 O O3G GTP . . . C 2 -22.68 -12.666 -11.859 1 51.03 ? O3G GTP 301 A 1 HETATM 5 O O3B GTP . . . C 2 -20.765 -11.334 -12.91 1 54.42 ? O3B GTP 301 A 1 HETATM 6 P PB GTP . . . C 2 -20.862 -10.494 -14.284 1 56.83 ? PB GTP 301 A 1 HETATM 7 O O1B GTP . . . C 2 -21.114 -11.352 -15.503 1 58.45 ? O1B GTP 301 A 1 HETATM 8 O O2B GTP . . . C 2 -19.54 -9.787 -14.406 1 60.1 ? O2B GTP 301 A 1 HETATM 9 O O3A GTP . . . C 2 -22.005 -9.377 -14.057 1 55.23 ? O3A GTP 301 A 1 HETATM 10 P PA GTP . . . C 2 -23.052 -9.025 -15.222 1 57.83 ? PA GTP 301 A 1 HETATM 11 O O1A GTP . . . C 2 -22.339 -8.932 -16.537 1 53.36 ? O1A GTP 301 A 1 HETATM 12 O O2A GTP . . . C 2 -24.145 -10.071 -15.273 1 62.26 ? O2A GTP 301 A 1 HETATM 13 O O5' GTP . . . C 2 -23.645 -7.586 -14.833 1 51.26 ? O5' GTP 301 A 1 HETATM 14 C C5' GTP . . . C 2 -24.966 -7.312 -15.232 1 60.46 ? C5' GTP 301 A 1 HETATM 15 C C4' GTP . . . C 2 -25.656 -6.613 -14.073 1 75.4 ? C4' GTP 301 A 1 HETATM 16 O O4' GTP . . . C 2 -24.756 -5.636 -13.611 1 75.34 ? O4' GTP 301 A 1 HETATM 17 C C3' GTP . . . C 2 -26.938 -5.931 -14.518 1 84.14 ? C3' GTP 301 A 1 HETATM 18 O O3' GTP . . . C 2 -28.026 -6.359 -13.731 1 86.35 ? O3' GTP 301 A 1 HETATM 19 C C2' GTP . . . C 2 -26.719 -4.461 -14.267 1 83.19 ? C2' GTP 301 A 1 HETATM 20 O O2' GTP . . . C 2 -27.622 -3.985 -13.296 1 86.95 ? O2' GTP 301 A 1 HETATM 21 C C1' GTP . . . C 2 -25.286 -4.34 -13.773 1 73.55 ? C1' GTP 301 A 1 HETATM 22 N N9 GTP . . . C 2 -24.53 -3.666 -14.834 1 65.25 ? N9 GTP 301 A 1 HETATM 23 C C8 GTP . . . C 2 -23.45 -4.158 -15.518 1 52.2 ? C8 GTP 301 A 1 HETATM 24 N N7 GTP . . . C 2 -23.062 -3.219 -16.405 1 54.19 ? N7 GTP 301 A 1 HETATM 25 C C5 GTP . . . C 2 -23.864 -2.133 -16.286 1 54.77 ? C5 GTP 301 A 1 HETATM 26 C C6 GTP . . . C 2 -23.914 -0.901 -16.933 1 58.78 ? C6 GTP 301 A 1 HETATM 27 O O6 GTP . . . C 2 -23.104 -0.622 -17.814 1 56.73 ? O6 GTP 301 A 1 HETATM 28 N N1 GTP . . . C 2 -24.883 0.023 -16.588 1 59.47 ? N1 GTP 301 A 1 HETATM 29 C C2 GTP . . . C 2 -25.8 -0.265 -15.602 1 56.13 ? C2 GTP 301 A 1 HETATM 30 N N2 GTP . . . C 2 -26.73 0.625 -15.266 1 48.76 ? N2 GTP 301 A 1 HETATM 31 N N3 GTP . . . C 2 -25.742 -1.486 -14.968 1 66.4 ? N3 GTP 301 A 1 HETATM 32 C C4 GTP . . . C 2 -24.797 -2.404 -15.302 1 64.19 ? C4 GTP 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #