data_6IAE # _model_server_result.job_id H-JOjWV7Q5kh3Bpsk-nolw _model_server_result.datetime_utc '2024-10-10 01:17:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6iae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6IAE # _exptl.entry_id 6IAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6IAE _cell.length_a 56.015 _cell.length_b 56.015 _cell.length_c 263.085 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 23 A SER 19 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc2 A OG1 THR 43 A THR 39 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc3 B OG SER 23 B SER 19 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc4 E O1B GTP . B GTP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc5 E O2B GTP . B GTP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 6IAE _atom_sites.fract_transf_matrix[1][1] 0.017852 _atom_sites.fract_transf_matrix[1][2] 0.010307 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP A 1 301 301 GTP GTP . D 3 MG A 1 302 302 MG MG . E 2 GTP B 1 301 301 GTP GTP . F 3 MG B 1 302 302 MG MG . G 4 HOH A 1 401 3 HOH HOH . G 4 HOH A 2 402 6 HOH HOH . G 4 HOH A 3 403 1 HOH HOH . G 4 HOH A 4 404 10 HOH HOH . G 4 HOH A 5 405 12 HOH HOH . G 4 HOH A 6 406 19 HOH HOH . H 4 HOH B 1 401 7 HOH HOH . H 4 HOH B 2 402 9 HOH HOH . H 4 HOH B 3 403 11 HOH HOH . H 4 HOH B 4 404 18 HOH HOH . H 4 HOH B 5 405 17 HOH HOH . H 4 HOH B 6 406 15 HOH HOH . H 4 HOH B 7 407 13 HOH HOH . H 4 HOH B 8 408 14 HOH HOH . H 4 HOH B 9 409 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3B GTP . . . C 2 0.769 -24.433 13.29 1 74.38 ? O3B GTP 301 A 1 HETATM 2 P PB GTP . . . C 2 1.214 -22.934 13.685 1 59.99 ? PB GTP 301 A 1 HETATM 3 O O1B GTP . . . C 2 0.933 -21.996 12.536 1 72.65 ? O1B GTP 301 A 1 HETATM 4 O O2B GTP . . . C 2 0.548 -22.473 14.95 1 61.04 ? O2B GTP 301 A 1 HETATM 5 O O3A GTP . . . C 2 2.775 -22.987 13.992 1 53.45 ? O3A GTP 301 A 1 HETATM 6 P PA GTP . . . C 2 3.331 -24.024 15.062 1 55.57 ? PA GTP 301 A 1 HETATM 7 O O1A GTP . . . C 2 2.279 -25.026 15.463 1 76.71 ? O1A GTP 301 A 1 HETATM 8 O O2A GTP . . . C 2 3.891 -23.351 16.279 1 54.76 ? O2A GTP 301 A 1 HETATM 9 O O5' GTP . . . C 2 4.537 -24.695 14.263 1 61.54 ? O5' GTP 301 A 1 HETATM 10 C C5' GTP . . . C 2 5.693 -23.939 14.012 1 56.09 ? C5' GTP 301 A 1 HETATM 11 C C4' GTP . . . C 2 6.868 -24.893 13.841 1 60.34 ? C4' GTP 301 A 1 HETATM 12 O O4' GTP . . . C 2 7.977 -24.123 13.436 1 59.21 ? O4' GTP 301 A 1 HETATM 13 C C3' GTP . . . C 2 7.22 -25.565 15.165 1 65.31 ? C3' GTP 301 A 1 HETATM 14 O O3' GTP . . . C 2 6.879 -26.929 15.189 1 76.99 ? O3' GTP 301 A 1 HETATM 15 C C2' GTP . . . C 2 8.717 -25.419 15.303 1 62.91 ? C2' GTP 301 A 1 HETATM 16 O O2' GTP . . . C 2 9.381 -26.631 15.013 1 67.09 ? O2' GTP 301 A 1 HETATM 17 C C1' GTP . . . C 2 9.057 -24.313 14.318 1 60.86 ? C1' GTP 301 A 1 HETATM 18 N N9 GTP . . . C 2 9.152 -23.111 15.145 1 63.71 ? N9 GTP 301 A 1 HETATM 19 C C8 GTP . . . C 2 8.123 -22.43 15.748 1 58.98 ? C8 GTP 301 A 1 HETATM 20 N N7 GTP . . . C 2 8.634 -21.391 16.435 1 52.5 ? N7 GTP 301 A 1 HETATM 21 C C5 GTP . . . C 2 9.974 -21.398 16.274 1 65.29 ? C5 GTP 301 A 1 HETATM 22 C C6 GTP . . . C 2 10.978 -20.567 16.743 1 72.78 ? C6 GTP 301 A 1 HETATM 23 O O6 GTP . . . C 2 10.694 -19.605 17.457 1 72.56 ? O6 GTP 301 A 1 HETATM 24 N N1 GTP . . . C 2 12.292 -20.834 16.397 1 78.29 ? N1 GTP 301 A 1 HETATM 25 C C2 GTP . . . C 2 12.609 -21.915 15.592 1 78.9 ? C2 GTP 301 A 1 HETATM 26 N N2 GTP . . . C 2 13.873 -22.172 15.261 1 76.99 ? N2 GTP 301 A 1 HETATM 27 N N3 GTP . . . C 2 11.602 -22.734 15.13 1 83.3 ? N3 GTP 301 A 1 HETATM 28 C C4 GTP . . . C 2 10.313 -22.477 15.467 1 75.37 ? C4 GTP 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #