data_6IB0 # _model_server_result.job_id -pgOFCvi0H2jz5CvdKwP4w _model_server_result.datetime_utc '2024-11-12 17:28:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ib0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6IB0 # _exptl.entry_id 6IB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3~{R})-3-(4-azanyl-3-ethynyl-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl]prop-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IB0 _cell.length_a 59.4 _cell.length_b 66 _cell.length_c 86.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 112 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAV _struct_conn.ptnr2_label_comp_id H8Z _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id H8Z _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.597 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H16 N6 O' _chem_comp.formula_weight 296.327 _chem_comp.id H8Z _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3~{R})-3-(4-azanyl-3-ethynyl-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl]prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAK H8Z trip 129 n n CAK CAJ H8Z sing 130 n n CAP NAQ H8Z sing 131 n n CAP CAO H8Z sing 132 n n NAI CAJ H8Z doub 133 n y NAI NAH H8Z sing 134 n y OAT CAS H8Z doub 135 n n CAJ C5 H8Z sing 136 n y NAQ CAS H8Z sing 137 n n NAQ CAR H8Z sing 138 n n CAS CAU H8Z sing 139 n n CAR CAM H8Z sing 140 n n CAN CAO H8Z sing 141 n n CAN CAM H8Z sing 142 n n CAV CAU H8Z doub 143 n n CAM NAH H8Z sing 144 n n NAH C4 H8Z sing 145 n y NAG C6 H8Z sing 146 n n C5 C4 H8Z doub 147 n y C5 C6 H8Z sing 148 n y C4 N3 H8Z sing 149 n y C6 N1 H8Z doub 150 n y N3 C2 H8Z doub 151 n y N1 C2 H8Z sing 152 n y C2 H1 H8Z sing 153 n n CAL H2 H8Z sing 154 n n CAM H3 H8Z sing 155 n n CAN H4 H8Z sing 156 n n CAN H5 H8Z sing 157 n n CAO H6 H8Z sing 158 n n CAO H7 H8Z sing 159 n n CAP H8 H8Z sing 160 n n CAP H9 H8Z sing 161 n n CAR H10 H8Z sing 162 n n CAR H11 H8Z sing 163 n n CAU H12 H8Z sing 164 n n CAV H14 H8Z sing 165 n n CAV H15 H8Z sing 166 n n NAG H17 H8Z sing 167 n n NAG H18 H8Z sing 168 n n # _atom_sites.entry_id 6IB0 _atom_sites.fract_transf_matrix[1][1] 0.016835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H8Z A 1 501 1 H8Z 104 . C 3 PG4 A 1 502 1 PG4 PG4 . D 4 HOH A 1 601 30 HOH HOH . D 4 HOH A 2 602 43 HOH HOH . D 4 HOH A 3 603 31 HOH HOH . D 4 HOH A 4 604 1 HOH HOH . D 4 HOH A 5 605 10 HOH HOH . D 4 HOH A 6 606 2 HOH HOH . D 4 HOH A 7 607 44 HOH HOH . D 4 HOH A 8 608 15 HOH HOH . D 4 HOH A 9 609 11 HOH HOH . D 4 HOH A 10 610 7 HOH HOH . D 4 HOH A 11 611 23 HOH HOH . D 4 HOH A 12 612 20 HOH HOH . D 4 HOH A 13 613 37 HOH HOH . D 4 HOH A 14 614 12 HOH HOH . D 4 HOH A 15 615 28 HOH HOH . D 4 HOH A 16 616 27 HOH HOH . D 4 HOH A 17 617 3 HOH HOH . D 4 HOH A 18 618 6 HOH HOH . D 4 HOH A 19 619 5 HOH HOH . D 4 HOH A 20 620 18 HOH HOH . D 4 HOH A 21 621 8 HOH HOH . D 4 HOH A 22 622 4 HOH HOH . D 4 HOH A 23 623 25 HOH HOH . D 4 HOH A 24 624 9 HOH HOH . D 4 HOH A 25 625 13 HOH HOH . D 4 HOH A 26 626 16 HOH HOH . D 4 HOH A 27 627 21 HOH HOH . D 4 HOH A 28 628 14 HOH HOH . D 4 HOH A 29 629 19 HOH HOH . D 4 HOH A 30 630 36 HOH HOH . D 4 HOH A 31 631 32 HOH HOH . D 4 HOH A 32 632 22 HOH HOH . D 4 HOH A 33 633 24 HOH HOH . D 4 HOH A 34 634 35 HOH HOH . D 4 HOH A 35 635 17 HOH HOH . D 4 HOH A 36 636 38 HOH HOH . D 4 HOH A 37 637 34 HOH HOH . D 4 HOH A 38 638 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H8Z . . . B 2 -22.653 5.771 -3.55 1 51.23 ? N1 H8Z 501 A 1 HETATM 2 C C2 H8Z . . . B 2 -22.675 7.037 -2.96 1 53.02 ? C2 H8Z 501 A 1 HETATM 3 C C5 H8Z . . . B 2 -24.013 6.581 -5.263 1 54.58 ? C5 H8Z 501 A 1 HETATM 4 C C6 H8Z . . . B 2 -23.329 5.588 -4.69 1 54.03 ? C6 H8Z 501 A 1 HETATM 5 C C4 H8Z . . . B 2 -24.032 7.81 -4.744 1 52.59 ? C4 H8Z 501 A 1 HETATM 6 C CAJ H8Z . . . B 2 -24.751 6.68 -6.359 1 55.88 ? CAJ H8Z 501 A 1 HETATM 7 C CAK H8Z . . . B 2 -25.034 5.634 -7.313 1 54.53 ? CAK H8Z 501 A 1 HETATM 8 C CAL H8Z . . . B 2 -25.269 4.773 -8.101 1 51.59 ? CAL H8Z 501 A 1 HETATM 9 C CAM H8Z . . . B 2 -25.252 9.994 -5.52 1 54.43 ? CAM H8Z 501 A 1 HETATM 10 C CAN H8Z . . . B 2 -26.651 10.283 -6.072 1 57.01 ? CAN H8Z 501 A 1 HETATM 11 C CAO H8Z . . . B 2 -26.854 11.794 -5.981 1 61.9 ? CAO H8Z 501 A 1 HETATM 12 C CAP H8Z . . . B 2 -25.842 12.574 -6.769 1 57.89 ? CAP H8Z 501 A 1 HETATM 13 C CAR H8Z . . . B 2 -24.143 10.84 -6.214 1 55.21 ? CAR H8Z 501 A 1 HETATM 14 C CAS H8Z . . . B 2 -23.614 13.303 -6.29 1 52.12 ? CAS H8Z 501 A 1 HETATM 15 C CAU H8Z . . . B 2 -22.203 13.033 -5.8 1 49.62 ? CAU H8Z 501 A 1 HETATM 16 C CAV H8Z . . . B 2 -21.334 14.187 -6.305 1 51.5 ? CAV H8Z 501 A 1 HETATM 17 N N3 H8Z . . . B 2 -23.402 8.058 -3.587 1 53.22 ? N3 H8Z 501 A 1 HETATM 18 N NAG H8Z . . . B 2 -23.352 4.409 -5.306 1 50.59 ? NAG H8Z 501 A 1 HETATM 19 N NAH H8Z . . . B 2 -24.844 8.557 -5.503 1 53.94 ? NAH H8Z 501 A 1 HETATM 20 N NAI H8Z . . . B 2 -25.209 7.919 -6.458 1 55.65 ? NAI H8Z 501 A 1 HETATM 21 N NAQ H8Z . . . B 2 -24.482 12.283 -6.282 1 55.02 ? NAQ H8Z 501 A 1 HETATM 22 O OAT H8Z . . . B 2 -23.984 14.469 -6.415 1 55.62 ? OAT H8Z 501 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #