data_6IB2 # _model_server_result.job_id IHAQSBXimDPko8cpmm1f2Q _model_server_result.datetime_utc '2025-09-01 08:18:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ib2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6IB2 # _exptl.entry_id 6IB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.504 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3~{R})-3-[4-azanyl-3-[1-(4-ethanoylphenyl)-1,2,3-triazol-4-yl]pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6IB2 _cell.length_a 60.7 _cell.length_b 68.4 _cell.length_c 84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6IB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 112 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C22 _struct_conn.ptnr2_label_comp_id 862 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 862 _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.684 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H25 N9 O2' _chem_comp.formula_weight 459.504 _chem_comp.id 862 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3~{R})-3-[4-azanyl-3-[1-(4-ethanoylphenyl)-1,2,3-triazol-4-yl]pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 862 sing 1 n n O C13 862 doub 2 n n C13 C10 862 sing 3 n n C10 C9 862 doub 4 n y C10 C11 862 sing 5 n y C9 C8 862 sing 6 n y C11 C12 862 doub 7 n y C8 C7 862 doub 8 n y C12 C7 862 sing 9 n y C7 N5 862 sing 10 n n N5 N6 862 sing 11 n y N5 C6 862 sing 12 n y N6 N7 862 doub 13 n y C6 C5 862 doub 14 n y N7 C5 862 sing 15 n y C5 C4 862 sing 16 n n C21 C22 862 sing 17 n n C21 C20 862 sing 18 n n N3 C4 862 doub 19 n y N3 N2 862 sing 20 n y C19 N8 862 sing 21 n n C19 C15 862 sing 22 n n C4 C2 862 sing 23 n y N8 C18 862 sing 24 n n N8 C20 862 sing 25 n n C18 C17 862 sing 26 n n C20 O1 862 doub 27 n n N2 C15 862 sing 28 n n N2 C1 862 sing 29 n y C2 C3 862 doub 30 n y C2 C1 862 sing 31 n y C15 C16 862 sing 32 n n N4 C3 862 sing 33 n n C16 C17 862 sing 34 n n C3 N 862 sing 35 n y C1 N1 862 doub 36 n y N C 862 doub 37 n y N1 C 862 sing 38 n y C H1 862 sing 39 n n C11 H2 862 sing 40 n n C12 H3 862 sing 41 n n C14 H4 862 sing 42 n n C14 H5 862 sing 43 n n C14 H6 862 sing 44 n n C15 H7 862 sing 45 n n C16 H8 862 sing 46 n n C16 H9 862 sing 47 n n C17 H10 862 sing 48 n n C17 H11 862 sing 49 n n C18 H12 862 sing 50 n n C18 H13 862 sing 51 n n C19 H14 862 sing 52 n n C19 H15 862 sing 53 n n C21 H16 862 sing 54 n n C21 H17 862 sing 55 n n C22 H18 862 sing 56 n n C22 H19 862 sing 57 n n C22 H20 862 sing 58 n n C6 H21 862 sing 59 n n C8 H22 862 sing 60 n n C9 H23 862 sing 61 n n N4 H24 862 sing 62 n n N4 H25 862 sing 63 n n # _atom_sites.entry_id 6IB2 _atom_sites.fract_transf_matrix[1][1] 0.016474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 862 A 1 501 1 862 862 . C 3 HOH A 1 601 49 HOH HOH . C 3 HOH A 2 602 76 HOH HOH . C 3 HOH A 3 603 61 HOH HOH . C 3 HOH A 4 604 74 HOH HOH . C 3 HOH A 5 605 47 HOH HOH . C 3 HOH A 6 606 89 HOH HOH . C 3 HOH A 7 607 79 HOH HOH . C 3 HOH A 8 608 60 HOH HOH . C 3 HOH A 9 609 7 HOH HOH . C 3 HOH A 10 610 31 HOH HOH . C 3 HOH A 11 611 77 HOH HOH . C 3 HOH A 12 612 52 HOH HOH . C 3 HOH A 13 613 84 HOH HOH . C 3 HOH A 14 614 24 HOH HOH . C 3 HOH A 15 615 48 HOH HOH . C 3 HOH A 16 616 2 HOH HOH . C 3 HOH A 17 617 28 HOH HOH . C 3 HOH A 18 618 75 HOH HOH . C 3 HOH A 19 619 3 HOH HOH . C 3 HOH A 20 620 58 HOH HOH . C 3 HOH A 21 621 91 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 90 HOH HOH . C 3 HOH A 24 624 70 HOH HOH . C 3 HOH A 25 625 29 HOH HOH . C 3 HOH A 26 626 23 HOH HOH . C 3 HOH A 27 627 33 HOH HOH . C 3 HOH A 28 628 80 HOH HOH . C 3 HOH A 29 629 64 HOH HOH . C 3 HOH A 30 630 86 HOH HOH . C 3 HOH A 31 631 6 HOH HOH . C 3 HOH A 32 632 66 HOH HOH . C 3 HOH A 33 633 85 HOH HOH . C 3 HOH A 34 634 82 HOH HOH . C 3 HOH A 35 635 11 HOH HOH . C 3 HOH A 36 636 38 HOH HOH . C 3 HOH A 37 637 14 HOH HOH . C 3 HOH A 38 638 16 HOH HOH . C 3 HOH A 39 639 65 HOH HOH . C 3 HOH A 40 640 54 HOH HOH . C 3 HOH A 41 641 67 HOH HOH . C 3 HOH A 42 642 81 HOH HOH . C 3 HOH A 43 643 40 HOH HOH . C 3 HOH A 44 644 18 HOH HOH . C 3 HOH A 45 645 96 HOH HOH . C 3 HOH A 46 646 50 HOH HOH . C 3 HOH A 47 647 78 HOH HOH . C 3 HOH A 48 648 36 HOH HOH . C 3 HOH A 49 649 15 HOH HOH . C 3 HOH A 50 650 19 HOH HOH . C 3 HOH A 51 651 12 HOH HOH . C 3 HOH A 52 652 69 HOH HOH . C 3 HOH A 53 653 13 HOH HOH . C 3 HOH A 54 654 10 HOH HOH . C 3 HOH A 55 655 20 HOH HOH . C 3 HOH A 56 656 55 HOH HOH . C 3 HOH A 57 657 35 HOH HOH . C 3 HOH A 58 658 26 HOH HOH . C 3 HOH A 59 659 1 HOH HOH . C 3 HOH A 60 660 62 HOH HOH . C 3 HOH A 61 661 43 HOH HOH . C 3 HOH A 62 662 21 HOH HOH . C 3 HOH A 63 663 9 HOH HOH . C 3 HOH A 64 664 51 HOH HOH . C 3 HOH A 65 665 44 HOH HOH . C 3 HOH A 66 666 30 HOH HOH . C 3 HOH A 67 667 46 HOH HOH . C 3 HOH A 68 668 37 HOH HOH . C 3 HOH A 69 669 34 HOH HOH . C 3 HOH A 70 670 88 HOH HOH . C 3 HOH A 71 671 63 HOH HOH . C 3 HOH A 72 672 57 HOH HOH . C 3 HOH A 73 673 8 HOH HOH . C 3 HOH A 74 674 73 HOH HOH . C 3 HOH A 75 675 68 HOH HOH . C 3 HOH A 76 676 41 HOH HOH . C 3 HOH A 77 677 53 HOH HOH . C 3 HOH A 78 678 59 HOH HOH . C 3 HOH A 79 679 71 HOH HOH . C 3 HOH A 80 680 32 HOH HOH . C 3 HOH A 81 681 4 HOH HOH . C 3 HOH A 82 682 95 HOH HOH . C 3 HOH A 83 683 25 HOH HOH . C 3 HOH A 84 684 92 HOH HOH . C 3 HOH A 85 685 27 HOH HOH . C 3 HOH A 86 686 39 HOH HOH . C 3 HOH A 87 687 17 HOH HOH . C 3 HOH A 88 688 56 HOH HOH . C 3 HOH A 89 689 42 HOH HOH . C 3 HOH A 90 690 72 HOH HOH . C 3 HOH A 91 691 45 HOH HOH . C 3 HOH A 92 692 5 HOH HOH . C 3 HOH A 93 693 87 HOH HOH . C 3 HOH A 94 694 97 HOH HOH . C 3 HOH A 95 695 94 HOH HOH . C 3 HOH A 96 696 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 862 . . . B 2 -23.077 6.56 -3.1 1 59.8 ? N 862 501 A 1 HETATM 2 C C 862 . . . B 2 -22.988 7.781 -2.533 1 64.38 ? C 862 501 A 1 HETATM 3 O O 862 . . . B 2 -30.165 4.175 -13.583 1 72.05 ? O 862 501 A 1 HETATM 4 C C1 862 . . . B 2 -24.137 8.872 -4.266 1 74.83 ? C1 862 501 A 1 HETATM 5 C C10 862 . . . B 2 -28.917 5.501 -12.094 1 83.61 ? C10 862 501 A 1 HETATM 6 C C11 862 . . . B 2 -28.502 4.426 -11.327 1 72.77 ? C11 862 501 A 1 HETATM 7 C C12 862 . . . B 2 -27.649 4.638 -10.251 1 71.22 ? C12 862 501 A 1 HETATM 8 C C13 862 . . . B 2 -29.838 5.305 -13.259 1 80.66 ? C13 862 501 A 1 HETATM 9 C C14 862 . . . B 2 -30.333 6.522 -13.982 1 76.9 ? C14 862 501 A 1 HETATM 10 C C15 862 . . . B 2 -24.932 11.245 -4.934 1 79.18 ? C15 862 501 A 1 HETATM 11 C C16 862 . . . B 2 -26.412 11.55 -4.747 1 76.04 ? C16 862 501 A 1 HETATM 12 C C17 862 . . . B 2 -26.637 13.054 -4.678 1 79.12 ? C17 862 501 A 1 HETATM 13 C C18 862 . . . B 2 -26.078 13.749 -5.914 1 89.23 ? C18 862 501 A 1 HETATM 14 C C19 862 . . . B 2 -24.438 11.935 -6.2 1 80.09 ? C19 862 501 A 1 HETATM 15 C C2 862 . . . B 2 -24.27 7.569 -4.941 1 65.15 ? C2 862 501 A 1 HETATM 16 C C20 862 . . . B 2 -23.688 14.232 -5.854 1 85.48 ? C20 862 501 A 1 HETATM 17 C C21 862 . . . B 2 -22.531 14.074 -6.812 1 73.17 ? C21 862 501 A 1 HETATM 18 C C22 862 . . . B 2 -21.595 15.253 -6.673 1 51.98 ? C22 862 501 A 1 HETATM 19 C C3 862 . . . B 2 -23.695 6.372 -4.288 1 55.31 ? C3 862 501 A 1 HETATM 20 C C4 862 . . . B 2 -25.007 7.92 -6.168 1 67.7 ? C4 862 501 A 1 HETATM 21 C C5 862 . . . B 2 -25.399 6.936 -7.214 1 63.86 ? C5 862 501 A 1 HETATM 22 C C6 862 . . . B 2 -26.374 7.223 -8.151 1 72.35 ? C6 862 501 A 1 HETATM 23 C C7 862 . . . B 2 -27.179 5.9 -9.89 1 73.2 ? C7 862 501 A 1 HETATM 24 C C8 862 . . . B 2 -27.62 6.953 -10.69 1 79.12 ? C8 862 501 A 1 HETATM 25 C C9 862 . . . B 2 -28.473 6.772 -11.771 1 87.38 ? C9 862 501 A 1 HETATM 26 N N1 862 . . . B 2 -23.49 8.907 -3.076 1 75.67 ? N1 862 501 A 1 HETATM 27 N N2 862 . . . B 2 -24.737 9.78 -5.062 1 77.08 ? N2 862 501 A 1 HETATM 28 N N3 862 . . . B 2 -25.289 9.234 -6.245 1 73.25 ? N3 862 501 A 1 HETATM 29 N N4 862 . . . B 2 -23.785 5.145 -4.857 1 48.67 ? N4 862 501 A 1 HETATM 30 N N5 862 . . . B 2 -26.361 6.092 -8.853 1 77.41 ? N5 862 501 A 1 HETATM 31 N N6 862 . . . B 2 -25.45 5.119 -8.418 1 71.44 ? N6 862 501 A 1 HETATM 32 N N7 862 . . . B 2 -24.812 5.722 -7.316 1 56.88 ? N7 862 501 A 1 HETATM 33 N N8 862 . . . B 2 -24.679 13.354 -5.978 1 97.06 ? N8 862 501 A 1 HETATM 34 O O1 862 . . . B 2 -23.684 15.12 -5.017 1 74.91 ? O1 862 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #