data_6IBL
#
_model_server_result.job_id            LxdCAb5jiMXfI4sQeypn0A 
_model_server_result.datetime_utc      '2024-11-21 14:39:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ibl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    6IBL 
#
_exptl.entry_id    6IBL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              344.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[5-[(1~{R})-2-[[(2~{R})-1-(4-methoxyphenyl)propan-2-yl]amino]-1-oxidanyl-ethyl]-2-oxidanyl-phenyl]methanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6IBL 
_cell.length_a            116.65 
_cell.length_b            121.12 
_cell.length_c            129.84 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6IBL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,Q,R 1 1 
C,D,L,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 185 A CYS 114 1_555 A SG CYS 270 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf2 A SG CYS 263 A CYS 192 1_555 A SG CYS 269 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 B SG CYS 23 C CYS 22 1_555 B SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 C SG CYS 185 B CYS 114 1_555 C SG CYS 270 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf5 C SG CYS 263 B CYS 192 1_555 C SG CYS 269 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf6 D SG CYS 23 D CYS 22 1_555 D SG CYS 96 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc1 A O CYS 263 A CYS 192 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 A O ASP 266 A ASP 195 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc3 A O CYS 269 A CYS 198 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc4 F NA NA . A NA 502 1_555 Q O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc5 C O CYS 263 B CYS 192 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc6 C O ASP 266 B ASP 195 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc7 C O CYS 269 B CYS 198 1_555 M NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc8 M NA NA . B NA 502 1_555 S O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc9 M NA NA . B NA 502 1_555 S O HOH . B HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
#
_chem_comp.formula           'C19 H24 N2 O4' 
_chem_comp.formula_weight    344.405 
_chem_comp.id                H98 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[5-[(1~{R})-2-[[(2~{R})-1-(4-methoxyphenyl)propan-2-yl]amino]-1-oxidanyl-ethyl]-2-oxidanyl-phenyl]methanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C16 H98 sing 191 n n 
O3 C19 H98 doub 192 n n 
N2 C19 H98 sing 193 n n 
N2 C15 H98 sing 194 n n 
C16 C15 H98 doub 195 n y 
C16 C17 H98 sing 196 n y 
C15 C14 H98 sing 197 n y 
C17 C18 H98 doub 198 n y 
C14 C13 H98 doub 199 n y 
C18 C13 H98 sing 200 n y 
C13 C12 H98 sing 201 n n 
C12 C11 H98 sing 202 n n 
C12 O4 H98 sing 203 n n 
C11 N1 H98 sing 204 n n 
N1 C2 H98 sing 205 n n 
C1 C2 H98 sing 206 n n 
C2 C3 H98 sing 207 n n 
C3 C4 H98 sing 208 n n 
C5 C4 H98 doub 209 n y 
C5 C6 H98 sing 210 n y 
C4 C9 H98 sing 211 n y 
C6 C7 H98 doub 212 n y 
C10 O1 H98 sing 213 n n 
C9 C8 H98 doub 214 n y 
C7 C8 H98 sing 215 n y 
C7 O1 H98 sing 216 n n 
C1 H1 H98 sing 217 n n 
C1 H2 H98 sing 218 n n 
C1 H3 H98 sing 219 n n 
C2 H4 H98 sing 220 n n 
C3 H5 H98 sing 221 n n 
C3 H6 H98 sing 222 n n 
C5 H7 H98 sing 223 n n 
C6 H8 H98 sing 224 n n 
C8 H9 H98 sing 225 n n 
C9 H10 H98 sing 226 n n 
C10 H11 H98 sing 227 n n 
C10 H12 H98 sing 228 n n 
C10 H13 H98 sing 229 n n 
N1 H14 H98 sing 230 n n 
C11 H16 H98 sing 231 n n 
C11 H17 H98 sing 232 n n 
C12 H18 H98 sing 233 n n 
C14 H19 H98 sing 234 n n 
C17 H20 H98 sing 235 n n 
C18 H21 H98 sing 236 n n 
O2 H22 H98 sing 237 n n 
N2 H23 H98 sing 238 n n 
C19 H24 H98 sing 239 n n 
O4 H25 H98 sing 240 n n 
#
_atom_sites.entry_id                     6IBL 
_atom_sites.fract_transf_matrix[1][1]    0.008573 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008256 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007702 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 H98 A 1 501 401 H98 UNL . 
F 4 NA A 1 502 402 NA NA . 
G 5 2CV A 1 503 501 2CV 2CV . 
H 5 2CV A 1 504 502 2CV 2CV . 
I 5 2CV A 1 505 503 2CV 2CV . 
J 5 2CV A 1 506 504 2CV 2CV . 
K 5 2CV A 1 507 501 2CV 2CV . 
L 3 H98 B 1 501 401 H98 UNL . 
M 4 NA B 1 502 402 NA NA . 
N 5 2CV B 1 503 501 2CV 2CV . 
O 5 2CV B 1 504 503 2CV 2CV . 
P 5 2CV B 1 505 504 2CV 2CV . 
Q 6 HOH A 1 601 27 HOH HOH . 
Q 6 HOH A 2 602 37 HOH HOH . 
Q 6 HOH A 3 603 3 HOH HOH . 
Q 6 HOH A 4 604 26 HOH HOH . 
Q 6 HOH A 5 605 28 HOH HOH . 
Q 6 HOH A 6 606 2 HOH HOH . 
Q 6 HOH A 7 607 21 HOH HOH . 
Q 6 HOH A 8 608 403 HOH HOH . 
R 6 HOH C 1 201 36 HOH HOH . 
R 6 HOH C 2 202 38 HOH HOH . 
R 6 HOH C 3 203 17 HOH HOH . 
R 6 HOH C 4 204 22 HOH HOH . 
R 6 HOH C 5 205 29 HOH HOH . 
R 6 HOH C 6 206 11 HOH HOH . 
S 6 HOH B 1 601 19 HOH HOH . 
S 6 HOH B 2 602 13 HOH HOH . 
S 6 HOH B 3 603 30 HOH HOH . 
S 6 HOH B 4 604 25 HOH HOH . 
S 6 HOH B 5 605 18 HOH HOH . 
S 6 HOH B 6 606 15 HOH HOH . 
S 6 HOH B 7 607 23 HOH HOH . 
S 6 HOH B 8 608 403 HOH HOH . 
S 6 HOH B 9 609 24 HOH HOH . 
S 6 HOH B 10 610 12 HOH HOH . 
S 6 HOH B 11 611 404 HOH HOH . 
T 6 HOH D 1 201 8 HOH HOH . 
T 6 HOH D 2 202 10 HOH HOH . 
T 6 HOH D 3 203 31 HOH HOH . 
T 6 HOH D 4 204 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 H98 . . . L 3 -32.475 32.217 -49.437 1 57.5 ? C1 H98 501 B 1 
HETATM 2 C C2 H98 . . . L 3 -33.234 33.389 -50.049 1 58.24 ? C2 H98 501 B 1 
HETATM 3 C C3 H98 . . . L 3 -32.671 34.734 -49.559 1 62.36 ? C3 H98 501 B 1 
HETATM 4 C C4 H98 . . . L 3 -31.514 35.231 -50.4 1 65.93 ? C4 H98 501 B 1 
HETATM 5 C C5 H98 . . . L 3 -30.207 35.184 -49.936 1 65.78 ? C5 H98 501 B 1 
HETATM 6 C C6 H98 . . . L 3 -29.144 35.621 -50.718 1 67.81 ? C6 H98 501 B 1 
HETATM 7 C C7 H98 . . . L 3 -29.375 36.1 -52.004 1 68.53 ? C7 H98 501 B 1 
HETATM 8 C C8 H98 . . . L 3 -30.678 36.148 -52.486 1 70.75 ? C8 H98 501 B 1 
HETATM 9 C C9 H98 . . . L 3 -31.724 35.714 -51.686 1 71.25 ? C9 H98 501 B 1 
HETATM 10 O O1 H98 . . . L 3 -28.291 36.531 -52.725 1 65.05 ? O1 H98 501 B 1 
HETATM 11 C C10 H98 . . . L 3 -28.149 36.201 -54.112 1 65.14 ? C10 H98 501 B 1 
HETATM 12 N N1 H98 . . . L 3 -34.694 33.305 -49.816 1 56.01 ? N1 H98 501 B 1 
HETATM 13 C C11 H98 . . . L 3 -35.344 32.071 -50.283 1 54.68 ? C11 H98 501 B 1 
HETATM 14 C C12 H98 . . . L 3 -36.782 32.296 -50.74 1 55.63 ? C12 H98 501 B 1 
HETATM 15 C C13 H98 . . . L 3 -37.409 30.967 -51.13 1 58.68 ? C13 H98 501 B 1 
HETATM 16 C C14 H98 . . . L 3 -37.012 30.358 -52.313 1 58.58 ? C14 H98 501 B 1 
HETATM 17 C C15 H98 . . . L 3 -37.556 29.142 -52.711 1 60.61 ? C15 H98 501 B 1 
HETATM 18 C C16 H98 . . . L 3 -38.507 28.513 -51.896 1 58.94 ? C16 H98 501 B 1 
HETATM 19 C C17 H98 . . . L 3 -38.908 29.121 -50.709 1 57.33 ? C17 H98 501 B 1 
HETATM 20 C C18 H98 . . . L 3 -38.361 30.33 -50.335 1 59.47 ? C18 H98 501 B 1 
HETATM 21 O O2 H98 . . . L 3 -39.013 27.329 -52.311 1 62.16 ? O2 H98 501 B 1 
HETATM 22 N N2 H98 . . . L 3 -37.203 28.491 -53.92 1 62.87 ? N2 H98 501 B 1 
HETATM 23 C C19 H98 . . . L 3 -36.263 28.849 -54.802 1 66.93 ? C19 H98 501 B 1 
HETATM 24 O O3 H98 . . . L 3 -35.677 28.087 -55.555 1 76.57 ? O3 H98 501 B 1 
HETATM 25 O O4 H98 . . . L 3 -37.469 32.987 -49.714 1 58.1 ? O4 H98 501 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#